Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009469

Physical Location & Seq

Genomic Coordinates Reverse (-)

2414951 .. 2416116

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG027300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTGCTGGTTTGAAGCGAGACCCTATTGTGATTCTCCGCATTGATGGAGAAGACCTCCTAGAATACATCAATGGACCAACTTTTGAAGCAGAAATGGTGGCTGCACACTCTCTGATAGAGTCAGCTGCTGGAACCCTCCAAGACTGTATTATCAAAGCTTTTGAACTGCTCACAGTTGAACAAGGGATGCCCCCTTCATCAGATCCTTGGGTTGTGAGCAATATTGTGGAACCTGCTCTGCAATCATGCGCTGGCCCTGACTGGAACAAGCCTGTCTCTCAAGAAACATTCCTAGTTGAATTCAAGAAAGTGGCCGAGTATGTGGCTCAACTTCTTAGGGAGCAGCATGTGATTGTAGCCCACAGCGAAAATACCTTTGATGGAAGTGGCATTAAGAGATTATTATCCAACAAGTTTGAATTAGACAAGACATTGAATGCAGCTATTGAGACTGTGCCAAAAGATCGCACTGGGAAAATATCGAAGGAGTATTTGCGTGTTGCGCTGGATGTGGTGGCTCCATCAGCTGGTCTTCCGCTGCTTGGTGCTGTTGAGCAGATGGACAAGATTGTTTTGGATGTGTTCAACCTGACGAATGCAGATGATGCAAAGCTGCTTAAAGAAGACGAGTTCAAGAAGATATTGACTGAAATCCTGGGGAGTATCATGTTGCAATTGGAGGGCAGTCCCATCTCTGTTTATTCTAATTCAGTCGTGCACGAGCCCCTTGCCTCTTCTTCGACACTGTTGCAAGTACAGCCATCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7

Protein Analysis

257

Amino Acids

28.01

Weight (kDa)

4.67

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38810 AT4G38810
fragaria_vesca	FvH4_2g02210 FvH4_2g02210
malus_domestica	MD05G1114400.v1.1 MD10G1116400.v1.1
prunus_persica	Prupe.8G158800_v2.0.a1 Prupe.8G158800_v2.0.a1
pyrus_communis	pycom05g10920 pycom10g10110
rosa_chinensis	RchiOBHm_Chr6g0245891
rosa_laevigata	RLG00000015292
rosa_multiflora	Rmu_sc0005570.1_g000011
rosa_roxburghii	Rroxscaffold_7G00215120
rosa_rugosa	Rorug05G0516400
rosa_samantha	Rh6AG031300 Rh6BG027800 Rh6CG027300 Rh6CG027600 Rh6DG026500 Rh6DG026700
rosa_wichuraiana	Rw6G002630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	530
AciI	CCGC	2 cut(s)	40, 539
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	302
AfaI	GTAC	1 cut(s)	759
AfiI	CCNNNNNNNGG	2 cut(s)	530, 545
AjnI	CCWGG	1 cut(s)	657
AluBI	AGCT	5 cut(s)	128, 161, 446, 530, 616
AluI	AGCT	5 cut(s)	128, 161, 446, 530, 616
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	3 cut(s)	15, 283, 446
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	200
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	2 cut(s)	256, 315
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	7 cut(s)	5, 104, 128, 346, 443, 541, 616
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	254, 508
AspS9I	GGNCC	2 cut(s)	77, 257
AvaII	GGWCC	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	729
BauI	CACGAG	1 cut(s)	722
BbsI	GAAGAC	3 cut(s)	60, 527, 633
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	6 cut(s)	91, 115, 358, 455, 528, 603
BccI	CCATC	6 cut(s)	41, 377, 532, 556, 701, 772
BcgI	CGANNNNNNTGC	4 cut(s)	713, 733, 747, 767
BciT130I	CCWGG	1 cut(s)	659
BcoDI	GTCTC	3 cut(s)	15, 283, 446
BfaI	CTAG	3 cut(s)	62, 296, 772
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	7 cut(s)	6, 105, 129, 347, 444, 542, 617
BlsI	GCNGC	7 cut(s)	7, 106, 130, 348, 445, 543, 618
Bme1390I	CCNGG	1 cut(s)	659
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	77, 257
BmiI	GGNNCC	3 cut(s)	136, 234, 522
BmrFI	CCNGG	1 cut(s)	659
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	180, 598
BmuI	ACTGGG	1 cut(s)	483
BpiI	GAAGAC	3 cut(s)	60, 527, 633
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpuEI	CTTGAG	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	209, 658
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 545
Bse1I	ACTGG	2 cut(s)	269, 478
Bse8I	GATNNNNATC	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	2 cut(s)	209, 658
BseGI	GGATG	3 cut(s)	195, 517, 586
BseJI	GATNNNNATC	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	530, 545
BseNI	ACTGG	2 cut(s)	269, 478
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	6 cut(s)	91, 115, 358, 455, 528, 603
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	258, 317
BsiHKAI	GWGCWC	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	2 cut(s)	530, 545
BsmAI	GTCTC	3 cut(s)	15, 283, 446
BsmFI	GGGAC	1 cut(s)	675
BsmI	GAATGC	2 cut(s)	445, 604
BsnI	GGCC	2 cut(s)	258, 317
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	723, 729
Bsp143I	GATC	2 cut(s)	205, 466
BspACI	CCGC	2 cut(s)	40, 539
BspANI	GGCC	2 cut(s)	258, 317
BspLI	GGNNCC	3 cut(s)	136, 234, 522
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	269, 478
BssECI	CCNNGG	2 cut(s)	209, 658
BssMI	GATC	2 cut(s)	205, 466
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	722
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	4 cut(s)	149, 178, 457, 750
Bst6I	CTCTTC	1 cut(s)	742
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	195, 517, 586
BstHHI	GCGC	2 cut(s)	254, 508
BstKTI	GATC	2 cut(s)	208, 469
BstMAI	GTCTC	3 cut(s)	15, 283, 446
BstMBI	GATC	2 cut(s)	205, 466
BstMWI	GCNNNNNNNGC	4 cut(s)	505, 527, 608, 760
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	657
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	6 cut(s)	91, 115, 358, 455, 528, 603
BstV2I	GAAGAC	3 cut(s)	60, 527, 633
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	258, 317
BtsCI	GGATG	3 cut(s)	195, 517, 586
BtsIMutI	CAGTG	2 cut(s)	471, 746
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	2 cut(s)	254, 508
Cfr13I	GGNCC	2 cut(s)	77, 257
Csp6I	GTAC	1 cut(s)	758
CviAII	CATG	3 cut(s)	249, 350, 670
CviQI	GTAC	1 cut(s)	758
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	2 cut(s)	207, 468
DpnII	GATC	2 cut(s)	205, 466
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	742
EarI	CTCTTC	1 cut(s)	742
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	729
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	3 cut(s)	252, 353, 673
FaiI	YATR	4 cut(s)	250, 324, 351, 671
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	3 cut(s)	248, 349, 669
Fnu4HI	GCNGC	7 cut(s)	6, 105, 129, 347, 444, 542, 617
FokI	GGATG	3 cut(s)	202, 524, 593
FriOI	GRGCYC	1 cut(s)	729
Fsp4HI	GCNGC	7 cut(s)	6, 105, 129, 347, 444, 542, 617
FspBI	CTAG	3 cut(s)	62, 296, 772
GlaI	GCGC	2 cut(s)	253, 507
GluI	GCNGC	7 cut(s)	6, 105, 129, 347, 444, 542, 617
HaeIII	GGCC	2 cut(s)	258, 317
HhaI	GCGC	2 cut(s)	254, 508
Hin1II	CATG	3 cut(s)	252, 353, 673
Hin6I	GCGC	2 cut(s)	252, 506
HinP1I	GCGC	2 cut(s)	252, 506
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	2 cut(s)	34, 122
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	2 cut(s)	117, 205
Hpy188III	TCNNGA	3 cut(s)	284, 307, 637
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	2 cut(s)	207, 481
HpyCH4III	ACNGT	4 cut(s)	149, 178, 457, 750
HpyCH4V	TGCA	8 cut(s)	107, 244, 443, 602, 611, 676, 721, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	505, 527, 608, 760
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	252, 353, 673
HspAI	GCGC	2 cut(s)	252, 506
Kzo9I	GATC	2 cut(s)	205, 466
LmnI	GCTCC	2 cut(s)	343, 526
Lsp1109I	GCAGC	6 cut(s)	91, 115, 358, 455, 528, 603
LweI	GCATC	2 cut(s)	180, 598
MaeI	CTAG	3 cut(s)	62, 296, 772
MalI	GATC	2 cut(s)	207, 468
MboI	GATC	2 cut(s)	205, 466
MboII	GAAGA	7 cut(s)	65, 527, 638, 652, 729, 732, 759
MfeI	CAATTG	1 cut(s)	677
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	2 cut(s)	723, 729
MluCI	AATT	4 cut(s)	302, 422, 677, 709
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	4 cut(s)	68, 149, 676, 745
MseI	TTAA	2 cut(s)	396, 621
MspA1I	CMGCKG	3 cut(s)	128, 530, 541
MspR9I	CCNGG	1 cut(s)	659
MunI	CAATTG	1 cut(s)	677
Mva1269I	GAATGC	2 cut(s)	445, 604
MvaI	CCWGG	1 cut(s)	659
MwoI	GCNNNNNNNGC	4 cut(s)	505, 527, 608, 760
NdeII	GATC	2 cut(s)	205, 466
NlaIII	CATG	3 cut(s)	252, 353, 673
NlaIV	GGNNCC	3 cut(s)	136, 234, 522
NmeAIII	GCCGAG	1 cut(s)	343
NspI	RCATGY	1 cut(s)	353
PctI	GAATGC	2 cut(s)	445, 604
PfeI	GAWTC	1 cut(s)	34
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	7 cut(s)	7, 106, 130, 348, 445, 543, 618
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	3 cut(s)	136, 234, 522
PspPI	GGNCC	2 cut(s)	77, 257
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	205
PvuII	CAGCTG	2 cut(s)	128, 530
RsaI	GTAC	1 cut(s)	759
RsaNI	GTAC	1 cut(s)	758
SaqAI	TTAA	2 cut(s)	396, 621
SatI	GCNGC	7 cut(s)	6, 105, 129, 347, 444, 542, 617
Sau3AI	GATC	2 cut(s)	205, 466
Sau96I	GGNCC	2 cut(s)	77, 257
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	659
SduI	GDGCHC	2 cut(s)	723, 729
SetI	ASST	9 cut(s)	60, 130, 163, 238, 380, 448, 532, 594, 618
SfaNI	GCATC	2 cut(s)	180, 598
SinI	GGWCC	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	4 cut(s)	302, 422, 677, 709
SsiI	CCGC	2 cut(s)	40, 539
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	3 cut(s)	62, 296, 772
StyD4I	CCNGG	1 cut(s)	657
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	4 cut(s)	149, 178, 457, 750
TaqI	TCGA	2 cut(s)	485, 743
TasI	AATT	4 cut(s)	302, 422, 677, 709
TatI	WGTACW	1 cut(s)	757
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	396, 621
Tru9I	TTAA	2 cut(s)	396, 621
TscAI	CASTG	2 cut(s)	478, 753
TseI	GCWGC	7 cut(s)	5, 104, 128, 346, 443, 541, 616
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	478, 753
Van91I	CCANNNNNTGG	1 cut(s)	530
VneI	GTGCAC	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	353
XspI	CTAG	3 cut(s)	62, 296, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.