Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003852

Physical Location & Seq

Genomic Coordinates Reverse (-)

18233360 .. 18236115

Gene Structure 2756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGTGAAGGAGAGTGAGTACTACGACATATTAGGCGTCAAGATTGACGCCTCTGGTGCTGAGATTAAGAAAGCTTATTATGTTCAAGCAAGGCAAGTTCATCCAGACAAGAACCCTGGTGATCCTCAAGCTGCTAAAAACTTTCAGATACTAGGTGAAGCTTATCAAGTTCTAGGCGATCCGGAGAAGCGTACAGCTTATGACAAATATGGAAAAGAAGGGGTTCAACAGGATGCAATGGTTGATCCTGCAGCTGTGTTTGGTATGCTCTTTGGTAGCGAGCTCTTTGAGGATTACGTTGGGCAACTTGCCCTTGCTTCAGCAGCCTCAATCGATGCTGAATTAGAATCGTATGAGCCTGAGATTAGAAAACAGATGCTTCAGGAAAAGATCAAAGCGATACAAAAGGACAGAGTAGACAAGCTCGTCACTACACTGAAAATCAAACTTGAACCATTCGTGGAAGGACAAACCGATGAATTTGTAAATTGGGCCACCGCAGAGGCAAAACGGCTTTCAACAGCTGGTTTTGGTGAGGCAATGCTTCACACAGTTGGTTACATTTACACTAGAAAAGCTGCTAAAGAACTCGGAAAGGATAAACGTTTCATGAAAGTACCGTTTTTAGCCGAATGGGTTCGTGACAAAGGCCACCAAGTAAAATCTCAAGTGATGGCTGCTTCTGGTGCGGTCAACTTACTTCTGTTGCAGGATGAAGTGAGCAAGCTGAATCAGGGAGAGAACAAAGAAGAGAATATTCAGAAAGCCATTGAAGCTAAAAAGGATGCAATGCTTCAATCCCTTTGGCAAATAAATGTTGTTGACATCGAATCAACCTTATCTCGTGTCTGCCAAGCGGTGCTTAAAGATCCAAGTGTTTCAAAGGATGTTCTTCGAGCTAGAGCTAGAGGATTGAGGAAGCTGGGTAACGTTTTCCAGGGTTCTAAGAAAGCGTATTCTAGAGAAAACAGCTTGCGTCATGAAGAAGAAACAGGAGTGAAAGTCCACACCGGAGATTCCTCGAAGCCGGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

345

Amino Acids

38.46

Weight (kDa)

6.99

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	6 - 68	4.1e-25	DnaJ domain
DnaJ-X	PF14308	135 - 327	1.6e-55	X-domain of DnaJ-containing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT4G39150 AT4G39150 AT4G39150
fragaria_vesca	FvH4_2g09560 FvH4_2g09560 FvH4_2g09560
malus_domestica	MD05G1061900.v1.1 MD10G1069700.v1.1
prunus_persica	Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1
pyrus_communis	pycom05g05330 pycom10g05530
rosa_chinensis	RchiOBHm_Chr6g0265851
rosa_laevigata	RLG00000014153
rosa_multiflora	Rmu_sc0007599.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202300
rosa_rugosa	Rorug06G0020800 Rorug06G0020800 Rorug06G0020800 Rorug06G0020900 Rorug06G0020900 Rorug06G0021000
rosa_samantha	Rh6AG142700 Rh6BG142300 Rh6CG139000 Rh6DG126400
rosa_wichuraiana	Rw6G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	3 cut(s)	498, 689, 857
AclI	AACGTT	2 cut(s)	604, 930
AclWI	GGATC	4 cut(s)	116, 173, 239, 863
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	2 cut(s)	303, 365
AcyI	GRCGYC	2 cut(s)	36, 48
AfaI	GTAC	3 cut(s)	20, 193, 618
AgsI	TTSAA	7 cut(s)	86, 227, 452, 519, 773, 797, 882
AjnI	CCWGG	2 cut(s)	115, 936
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	4 cut(s)	116, 173, 239, 863
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	2 cut(s)	492, 649
ApeKI	GCWGC	5 cut(s)	131, 251, 323, 578, 677
ApoI	RAATTY	1 cut(s)	479
Asp700I	GAANNNNTTC	2 cut(s)	222, 636
AspS9I	GGNCC	1 cut(s)	492
AsuHPI	GGTGA	4 cut(s)	16, 131, 167, 545
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	843
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	5 cut(s)	118, 263, 335, 565, 664
BccI	CCATC	1 cut(s)	667
BceAI	ACGGC	1 cut(s)	527
BciT130I	CCWGG	2 cut(s)	117, 938
BfaI	CTAG	6 cut(s)	152, 173, 570, 900, 906, 960
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	5 cut(s)	132, 252, 324, 579, 678
BlsI	GCNGC	5 cut(s)	133, 253, 325, 580, 679
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	117, 938
BmgT120I	GGNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	117, 938
BmsI	GCATC	4 cut(s)	223, 325, 366, 775
BpuEI	CTTGAG	2 cut(s)	111, 651
Bsa29I	ATCGAT	1 cut(s)	333
BsaHI	GRCGYC	2 cut(s)	36, 48
BsaJI	CCNNGG	2 cut(s)	115, 937
BsaWI	WCCGGW	2 cut(s)	181, 1010
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 987, 1017
Bse118I	RCCGGY	1 cut(s)	1027
Bse3DI	GCAATG	3 cut(s)	243, 546, 795
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	117, 938
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	115, 937
BseGI	GGATG	5 cut(s)	100, 238, 718, 790, 892
BseMI	GCAATG	3 cut(s)	243, 546, 795
BseMII	CTCAG	2 cut(s)	51, 351
BseXI	GCAGC	5 cut(s)	118, 263, 335, 565, 664
BseYI	CCCAGC	1 cut(s)	922
BshFI	GGCC	2 cut(s)	494, 651
BshVI	ATCGAT	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	182, 1011, 1028
BsnI	GGCC	2 cut(s)	494, 651
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	121, 178, 244, 390, 868
BspACI	CCGC	3 cut(s)	498, 689, 857
BspANI	GGCC	2 cut(s)	494, 651
BspCNI	CTCAG	2 cut(s)	52, 352
BspDI	ATCGAT	1 cut(s)	333
BspEI	TCCGGA	1 cut(s)	181
BspHI	TCATGA	2 cut(s)	609, 979
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	4 cut(s)	116, 173, 239, 863
BsrDI	GCAATG	3 cut(s)	243, 546, 795
BsrFI	RCCGGY	1 cut(s)	1027
BssAI	RCCGGY	1 cut(s)	1027
BssECI	CCNNGG	2 cut(s)	115, 937
BssMI	GATC	5 cut(s)	121, 178, 244, 390, 868
BssNI	GRCGYC	2 cut(s)	36, 48
BssSI	CACGAG	1 cut(s)	843
Bst2BI	CACGAG	1 cut(s)	843
Bst2UI	CCWGG	2 cut(s)	117, 938
Bst4CI	ACNGT	2 cut(s)	553, 621
Bst6I	CTCTTC	1 cut(s)	744
BstACI	GRCGYC	2 cut(s)	36, 48
BstC8I	GCNNGC	4 cut(s)	281, 725, 974, 1029
BstDEI	CTNAG	3 cut(s)	60, 360, 945
BstF5I	GGATG	5 cut(s)	100, 238, 718, 790, 892
BstKTI	GATC	5 cut(s)	124, 181, 247, 393, 871
BstMBI	GATC	5 cut(s)	121, 178, 244, 390, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 323, 686, 773
BstNI	CCWGG	2 cut(s)	117, 938
BstSCI	CCNGG	2 cut(s)	115, 936
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	5 cut(s)	118, 263, 335, 565, 664
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	494, 651
BsuTUI	ATCGAT	1 cut(s)	333
BtsCI	GGATG	5 cut(s)	100, 238, 718, 790, 892
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	4 cut(s)	281, 725, 974, 1029
CciI	TCATGA	2 cut(s)	609, 979
Cfr10I	RCCGGY	1 cut(s)	1027
Cfr13I	GGNCC	1 cut(s)	492
ClaI	ATCGAT	1 cut(s)	333
CseI	GACGC	3 cut(s)	25, 56, 965
Csp6I	GTAC	3 cut(s)	19, 192, 617
CviAII	CATG	2 cut(s)	610, 980
CviQI	GTAC	3 cut(s)	19, 192, 617
DdeI	CTNAG	3 cut(s)	60, 360, 945
DpnI	GATC	5 cut(s)	123, 180, 246, 392, 870
DpnII	GATC	5 cut(s)	121, 178, 244, 390, 868
DrdI	GACNNNNNNGTC	1 cut(s)	425
DseDI	GACNNNNNNGTC	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	2 cut(s)	303, 365
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	115, 936
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	2 cut(s)	613, 983
FaiI	YATR	8 cut(s)	29, 81, 201, 210, 266, 354, 611, 981
FalI	AAGNNNNNCTT	2 cut(s)	846, 878
FatI	CATG	2 cut(s)	609, 979
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	5 cut(s)	132, 252, 324, 579, 678
FokI	GGATG	5 cut(s)	87, 245, 725, 797, 899
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	5 cut(s)	132, 252, 324, 579, 678
FspBI	CTAG	6 cut(s)	152, 173, 570, 900, 906, 960
GluI	GCNGC	5 cut(s)	132, 252, 324, 579, 678
GsaI	CCCAGC	1 cut(s)	926
HaeIII	GGCC	2 cut(s)	494, 651
HapII	CCGG	3 cut(s)	182, 1011, 1028
HgaI	GACGC	3 cut(s)	25, 56, 965
Hin1I	GRCGYC	2 cut(s)	36, 48
Hin1II	CATG	2 cut(s)	613, 983
HincII	GTYRAC	2 cut(s)	694, 823
HindII	GTYRAC	2 cut(s)	694, 823
HindIII	AAGCTT	2 cut(s)	72, 159
HinfI	GANTC	4 cut(s)	347, 730, 830, 1016
HpaII	CCGG	3 cut(s)	182, 1011, 1028
HphI	GGTGA	4 cut(s)	16, 131, 167, 545
Hpy166II	GTNNAC	4 cut(s)	418, 694, 823, 1006
Hpy188I	TCNGA	3 cut(s)	147, 593, 762
Hpy188III	TCNNGA	8 cut(s)	40, 104, 182, 383, 610, 641, 960, 980
Hpy8I	GTNNAC	4 cut(s)	418, 694, 823, 1006
HpyAV	CCTTC	2 cut(s)	212, 458
HpyCH4III	ACNGT	2 cut(s)	553, 621
HpyCH4IV	ACGT	3 cut(s)	297, 604, 930
HpyCH4V	TGCA	4 cut(s)	236, 251, 709, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 323, 686, 773
HpyF3I	CTNAG	3 cut(s)	60, 360, 945
HpySE526I	ACGT	3 cut(s)	297, 604, 930
Hsp92I	GRCGYC	2 cut(s)	36, 48
Hsp92II	CATG	2 cut(s)	613, 983
Kpn2I	TCCGGA	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	1027
KroNI	GCCGGC	1 cut(s)	1029
Kzo9I	GATC	5 cut(s)	121, 178, 244, 390, 868
Lsp1109I	GCAGC	5 cut(s)	118, 263, 335, 565, 664
LweI	GCATC	4 cut(s)	223, 325, 366, 775
MaeI	CTAG	6 cut(s)	152, 173, 570, 900, 906, 960
MaeII	ACGT	3 cut(s)	297, 604, 930
MaeIII	GTNAC	4 cut(s)	427, 557, 641, 926
MalI	GATC	5 cut(s)	123, 180, 246, 392, 870
MboI	GATC	5 cut(s)	121, 178, 244, 390, 868
MboII	GAAGA	4 cut(s)	761, 884, 995, 998
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	341, 479, 487
MnlI	CCTC	9 cut(s)	61, 135, 283, 337, 496, 529, 902, 909, 1030
MroI	TCCGGA	1 cut(s)	181
MroNI	GCCGGC	1 cut(s)	1027
MroXI	GAANNNNTTC	2 cut(s)	222, 636
MseI	TTAA	3 cut(s)	66, 864, 1036
MspA1I	CMGCKG	2 cut(s)	254, 524
MspI	CCGG	3 cut(s)	182, 1011, 1028
MspR9I	CCNGG	2 cut(s)	117, 938
MvaI	CCWGG	2 cut(s)	117, 938
MwoI	GCNNNNNNNGC	4 cut(s)	56, 323, 686, 773
NaeI	GCCGGC	1 cut(s)	1029
NdeII	GATC	5 cut(s)	121, 178, 244, 390, 868
NgoMIV	GCCGGC	1 cut(s)	1027
NlaIII	CATG	2 cut(s)	613, 983
NmuCI	GTSAC	2 cut(s)	427, 641
PagI	TCATGA	2 cut(s)	609, 979
PdiI	GCCGGC	1 cut(s)	1029
PdmI	GAANNNNTTC	2 cut(s)	222, 636
PfeI	GAWTC	4 cut(s)	347, 730, 830, 1016
PkrI	GCNGC	5 cut(s)	133, 253, 325, 580, 679
Psp124BI	GAGCTC	1 cut(s)	285
Psp1406I	AACGTT	2 cut(s)	604, 930
Psp6I	CCWGG	2 cut(s)	115, 936
PspFI	CCCAGC	1 cut(s)	922
PspGI	CCWGG	2 cut(s)	115, 936
PspPI	GGNCC	1 cut(s)	492
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	868
PvuII	CAGCTG	2 cut(s)	254, 524
RsaI	GTAC	3 cut(s)	20, 193, 618
RsaNI	GTAC	3 cut(s)	19, 192, 617
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	66, 864, 1036
SatI	GCNGC	5 cut(s)	132, 252, 324, 579, 678
Sau3AI	GATC	5 cut(s)	121, 178, 244, 390, 868
Sau96I	GGNCC	1 cut(s)	492
ScaI	AGTACT	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	117, 938
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	4 cut(s)	223, 325, 366, 775
SfcI	CTRYAG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	126, 666
SmoI	CTYRAG	2 cut(s)	126, 666
Sse9I	AATT	3 cut(s)	341, 479, 487
SsiI	CCGC	3 cut(s)	498, 689, 857
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	6 cut(s)	152, 173, 570, 900, 906, 960
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	115, 936
TaaI	ACNGT	2 cut(s)	553, 621
TaiI	ACGT	3 cut(s)	300, 607, 933
TaqI	TCGA	4 cut(s)	333, 828, 895, 1022
TasI	AATT	3 cut(s)	341, 479, 487
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	4 cut(s)	347, 730, 830, 1016
Tru1I	TTAA	3 cut(s)	66, 864, 1036
Tru9I	TTAA	3 cut(s)	66, 864, 1036
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	2 cut(s)	427, 641
TseI	GCWGC	5 cut(s)	131, 251, 323, 578, 677
Tsp45I	GTSAC	2 cut(s)	427, 641
TspDTI	ATGAA	6 cut(s)	89, 492, 598, 626, 729, 996
TspRI	CASTG	1 cut(s)	441
XapI	RAATTY	1 cut(s)	479
XbaI	TCTAGA	1 cut(s)	959
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	2 cut(s)	222, 636
XspI	CTAG	6 cut(s)	152, 173, 570, 900, 906, 960
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.