Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003852

Physical Location & Seq

Genomic Coordinates Forward (+)

17820607 .. 17824480

Gene Structure 3874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG126400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGTGAAGGACACTGCCTTTTACGATGTGTTGGGTGTCAATGTCGAAGCCTCCGCTGCTGATATTAAAAAGGCTTACTATCTCAAGGCAAGGCAGGTTCACCCAGATAAAAATCCGGGAGATCCAAAGGCTGCTGAAAATTTCCAAGCACTTGGTGAGGCTTATCAGGTTCTAAGTGATCCAGAAAAGCGTGAAGCATATGACAAAAATGGAAAGGAAGGCATACCACAGGACTCCATGGTAGATCCTGCAGCTGTGTTTGGGATGCTTTTTGGGAGTGAATACTTTGATGATTATGTTGGCCAACTTGCTTTGGCTTCTTTATCATCTGTTGAAGTGGATGAAGATACACAGGATCCTGAAGTCCATAGGCAGAGAGTTCAGGAAAAAATGAGGGCATTGCGGAAGGAAAGGGAAGAAAAGCTCATAACTATTCTGAAAGATCGTATACAACCATTTGTGGATGGTCGTACAGATGAGTTTGTAAGATGGGCAAATGTAGAAGCACGGCGCCTCTCAGCAGCTGCCTTTGGCGAGGCTATGCTACATACGATTGGTTATATTTATACTAGGAAAGCTGCAAGAGAACTTGGAAAAGACAAGCGGTACATGAACGTACCCTTTCTAGCAGAATGGGTGCGAGATAAAGGACATCAGATAAAGTCACAAGTGTCAGCAGCTTCAGGTGCTGTATCTTTAATTCAGCTACAGGAGGATCTGAAGAAGTTAAACCAAGGTGAAAACAGGGAAGAGAACTTAACGAAAGCCATTGAAGAGAAGAAGGATGCAGTGCTTAATTCCCTCTGGCAGATCAATGTGGTTGATATTGAGTCAACCTTGTCACATGTCTGCCTAGCAGTACTTAAAGACCCCACTGTGTCCAAGGATGTTTTGAAGGCACGGGCTAGAGCATTGAAAAAGTTGGGAACAATCTTCCAAGGTGCAAAGGCAGCTTACAGTAGAGAGAACAGTCTCCGCCATGAAAGGGATGAGAAAATAGATTCAGCGTCGTCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

339

Amino Acids

38.1

Weight (kDa)

6.16

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	7 - 68	9e-26	DnaJ domain
DnaJ-X	PF14308	135 - 328	6.5e-57	X-domain of DnaJ-containing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT4G39150 AT4G39150 AT4G39150
fragaria_vesca	FvH4_2g09560 FvH4_2g09560 FvH4_2g09560
malus_domestica	MD05G1061900.v1.1 MD10G1069700.v1.1
prunus_persica	Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1
pyrus_communis	pycom05g05330 pycom10g05530
rosa_chinensis	RchiOBHm_Chr6g0265851
rosa_laevigata	RLG00000014153
rosa_multiflora	Rmu_sc0007599.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202300
rosa_rugosa	Rorug06G0020800 Rorug06G0020800 Rorug06G0020800 Rorug06G0020900 Rorug06G0020900 Rorug06G0021000
rosa_samantha	Rh6AG142700 Rh6BG142300 Rh6CG139000 Rh6DG126400
rosa_wichuraiana	Rw6G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	4 cut(s)	54, 403, 604, 976
AclWI	GGATC	6 cut(s)	116, 173, 239, 350, 363, 723
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	3 cut(s)	381, 666, 740
AcyI	GRCGYC	1 cut(s)	511
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	4 cut(s)	472, 608, 618, 861
AfiI	CCNNNNNNNGG	1 cut(s)	985
AflIII	ACRYGT	1 cut(s)	844
AgsI	TTSAA	4 cut(s)	335, 773, 895, 916
AluBI	AGCT	7 cut(s)	254, 424, 524, 578, 680, 706, 953
AluI	AGCT	7 cut(s)	254, 424, 524, 578, 680, 706, 953
Alw26I	GTCTC	1 cut(s)	977
AlwI	GGATC	6 cut(s)	116, 173, 239, 350, 363, 723
AlwNI	CAGNNNCTG	2 cut(s)	524, 689
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	8 cut(s)	56, 131, 251, 521, 524, 578, 677, 950
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	513
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	4 cut(s)	16, 92, 167, 749
BalI	TGGCCA	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	510
BbvI	GCAGC	8 cut(s)	43, 118, 263, 511, 533, 565, 689, 962
BccI	CCATC	2 cut(s)	458, 483
BceAI	ACGGC	1 cut(s)	524
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	977
BfaI	CTAG	4 cut(s)	570, 626, 854, 906
BfmI	CTRYAG	2 cut(s)	249, 707
BfoI	RGCGCY	1 cut(s)	514
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	8 cut(s)	57, 132, 252, 522, 525, 579, 678, 951
BlsI	GCNGC	8 cut(s)	58, 133, 253, 523, 526, 580, 679, 952
BmcAI	AGTACT	1 cut(s)	861
Bme1390I	CCNGG	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	357, 512
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	2 cut(s)	255, 775
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	511
BsaJI	CCNNGG	4 cut(s)	237, 733, 882, 937
Bsc4I	CCNNNNNNNGG	1 cut(s)	985
Bse3DI	GCAATG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	4 cut(s)	237, 733, 882, 937
BseGI	GGATG	6 cut(s)	270, 346, 469, 790, 892, 994
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	985
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	531
BseXI	GCAGC	8 cut(s)	43, 118, 263, 511, 533, 565, 689, 962
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	985
BsmAI	GTCTC	1 cut(s)	977
BsnI	GGCC	1 cut(s)	303
Bsp143I	GATC	7 cut(s)	121, 178, 244, 355, 442, 715, 810
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	4 cut(s)	54, 403, 604, 976
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	530
BspLI	GGNNCC	2 cut(s)	357, 512
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	6 cut(s)	116, 173, 239, 350, 363, 723
BspT107I	GGYRCC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	398
BssECI	CCNNGG	4 cut(s)	237, 733, 882, 937
BssMI	GATC	7 cut(s)	121, 178, 244, 355, 442, 715, 810
BssNAI	GTATAC	1 cut(s)	449
BssNI	GRCGYC	1 cut(s)	511
BssT1I	CCWWGG	4 cut(s)	237, 733, 882, 937
Bst1107I	GTATAC	1 cut(s)	449
Bst4CI	ACNGT	3 cut(s)	877, 959, 971
Bst6I	CTCTTC	2 cut(s)	744, 768
BstACI	GRCGYC	1 cut(s)	511
BstDEI	CTNAG	2 cut(s)	173, 517
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	6 cut(s)	270, 346, 469, 790, 892, 994
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	7 cut(s)	124, 181, 247, 358, 445, 718, 813
BstMAI	GTCTC	1 cut(s)	977
BstMBI	GATC	7 cut(s)	121, 178, 244, 355, 442, 715, 810
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 686, 950
BstNSI	RCATGY	1 cut(s)	848
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	2 cut(s)	249, 707
BstV1I	GCAGC	8 cut(s)	43, 118, 263, 511, 533, 565, 689, 962
BstX2I	RGATCY	4 cut(s)	121, 244, 355, 715
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	4 cut(s)	121, 244, 355, 715
BstZ17I	GTATAC	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	6 cut(s)	270, 346, 469, 790, 892, 994
BtsI	GCAGTG	2 cut(s)	12, 795
BtsIMutI	CAGTG	3 cut(s)	12, 795, 873
BveI	ACCTGC	1 cut(s)	85
CaiI	CAGNNNCTG	2 cut(s)	524, 689
CfoI	GCGC	1 cut(s)	513
CseI	GACGC	1 cut(s)	996
Csp6I	GTAC	4 cut(s)	471, 607, 617, 860
CviAII	CATG	4 cut(s)	238, 610, 845, 980
CviQI	GTAC	4 cut(s)	471, 607, 617, 860
DdeI	CTNAG	2 cut(s)	173, 517
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	7 cut(s)	123, 180, 246, 357, 444, 717, 812
DpnII	GATC	7 cut(s)	121, 178, 244, 355, 442, 715, 810
DraIII	CACNNNGTG	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	744, 768
EarI	CTCTTC	2 cut(s)	744, 768
EciI	GGCGGA	1 cut(s)	965
Eco130I	CCWWGG	4 cut(s)	237, 733, 882, 937
Eco57I	CTGAAG	3 cut(s)	381, 666, 740
EcoT14I	CCWWGG	4 cut(s)	237, 733, 882, 937
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
ErhI	CCWWGG	4 cut(s)	237, 733, 882, 937
FaeI	CATG	4 cut(s)	241, 613, 848, 983
FatI	CATG	4 cut(s)	237, 609, 844, 979
FauNDI	CATATG	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	8 cut(s)	57, 132, 252, 522, 525, 579, 678, 951
FokI	GGATG	6 cut(s)	277, 353, 476, 797, 899, 1001
Fsp4HI	GCNGC	8 cut(s)	57, 132, 252, 522, 525, 579, 678, 951
FspBI	CTAG	4 cut(s)	570, 626, 854, 906
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	8 cut(s)	57, 132, 252, 522, 525, 579, 678, 951
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	996
HhaI	GCGC	1 cut(s)	513
Hin1I	GRCGYC	1 cut(s)	511
Hin1II	CATG	4 cut(s)	241, 613, 848, 983
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HinfI	GANTC	3 cut(s)	233, 830, 1001
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	4 cut(s)	16, 92, 167, 749
Hpy166II	GTNNAC	3 cut(s)	100, 449, 834
Hpy188I	TCNGA	3 cut(s)	438, 657, 720
Hpy188III	TCNNGA	3 cut(s)	182, 359, 383
Hpy8I	GTNNAC	3 cut(s)	100, 449, 834
Hpy99I	CGWCG	1 cut(s)	1012
HpyAV	CCTTC	4 cut(s)	212, 400, 775, 889
HpyCH4III	ACNGT	3 cut(s)	877, 959, 971
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	4 cut(s)	251, 581, 788, 944
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 686, 950
HpyF3I	CTNAG	2 cut(s)	173, 517
HpySE526I	ACGT	1 cut(s)	615
Hsp92I	GRCGYC	1 cut(s)	511
Hsp92II	CATG	4 cut(s)	241, 613, 848, 983
HspAI	GCGC	1 cut(s)	511
KasI	GGCGCC	1 cut(s)	510
Kzo9I	GATC	7 cut(s)	121, 178, 244, 355, 442, 715, 810
Lsp1109I	GCAGC	8 cut(s)	43, 118, 263, 511, 533, 565, 689, 962
LweI	GCATC	2 cut(s)	255, 775
MaeI	CTAG	4 cut(s)	570, 626, 854, 906
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	2 cut(s)	663, 840
MalI	GATC	7 cut(s)	123, 180, 246, 357, 444, 717, 812
MboI	GATC	7 cut(s)	121, 178, 244, 355, 442, 715, 810
MboII	GAAGA	7 cut(s)	356, 428, 733, 761, 785, 790, 925
MflI	RGATCY	4 cut(s)	121, 244, 355, 715
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	3 cut(s)	139, 699, 796
MluNI	TGGCCA	1 cut(s)	303
Mly113I	GGCGCC	1 cut(s)	511
MlyI	GAGTC	2 cut(s)	227, 839
MnlI	CCTC	7 cut(s)	61, 151, 387, 524, 529, 706, 812
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	6 cut(s)	66, 698, 728, 758, 795, 864
Msp20I	TGGCCA	1 cut(s)	303
MspA1I	CMGCKG	3 cut(s)	56, 254, 524
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	56, 686, 950
NarI	GGCGCC	1 cut(s)	511
NciI	CCSGG	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	237
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	7 cut(s)	121, 178, 244, 355, 442, 715, 810
NlaIII	CATG	4 cut(s)	241, 613, 848, 983
NlaIV	GGNNCC	2 cut(s)	357, 512
NmuCI	GTSAC	2 cut(s)	663, 840
NspI	RCATGY	1 cut(s)	848
PciI	ACATGT	1 cut(s)	844
PfeI	GAWTC	1 cut(s)	1001
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	8 cut(s)	58, 133, 253, 523, 526, 580, 679, 952
PleI	GAGTC	2 cut(s)	227, 838
PluTI	GGCGCC	1 cut(s)	514
PpsI	GAGTC	2 cut(s)	227, 838
PscI	ACATGT	1 cut(s)	844
PspN4I	GGNNCC	2 cut(s)	357, 512
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	2 cut(s)	524, 689
PsuI	RGATCY	4 cut(s)	121, 244, 355, 715
PvuII	CAGCTG	2 cut(s)	254, 524
RsaI	GTAC	4 cut(s)	472, 608, 618, 861
RsaNI	GTAC	4 cut(s)	471, 607, 617, 860
SaqAI	TTAA	6 cut(s)	66, 698, 728, 758, 795, 864
SatI	GCNGC	8 cut(s)	57, 132, 252, 522, 525, 579, 678, 951
Sau3AI	GATC	7 cut(s)	121, 178, 244, 355, 442, 715, 810
ScaI	AGTACT	1 cut(s)	861
SchI	GAGTC	2 cut(s)	227, 839
ScrFI	CCNGG	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	255, 775
SfcI	CTRYAG	2 cut(s)	249, 707
SfoI	GGCGCC	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	3 cut(s)	139, 699, 796
SsiI	CCGC	4 cut(s)	54, 403, 604, 976
SspDI	GGCGCC	1 cut(s)	510
SspMI	CTAG	4 cut(s)	570, 626, 854, 906
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	4 cut(s)	237, 733, 882, 937
TaaI	ACNGT	3 cut(s)	877, 959, 971
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	139, 699, 796
TatI	WGTACW	1 cut(s)	859
TfiI	GAWTC	1 cut(s)	1001
Tru1I	TTAA	6 cut(s)	66, 698, 728, 758, 795, 864
Tru9I	TTAA	6 cut(s)	66, 698, 728, 758, 795, 864
TscAI	CASTG	3 cut(s)	19, 795, 880
TseFI	GTSAC	2 cut(s)	663, 840
TseI	GCWGC	8 cut(s)	56, 131, 251, 521, 524, 578, 677, 950
Tsp45I	GTSAC	2 cut(s)	663, 840
TspDTI	ATGAA	3 cut(s)	357, 626, 996
TspRI	CASTG	3 cut(s)	19, 795, 880
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	448
XspI	CTAG	4 cut(s)	570, 626, 854, 906
ZrmI	AGTACT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.