Rorug06G0020800

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003852
Physical Location & Seq
Reverse (-)
2596223 .. 2599250
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0020800.1

Sequence Viewer

Length: 1329 bp
ATGGACCGTCGGATCAAATCCCCCATCCCTACCTATAAATACAAACCCCCTTCCTTCGCTTCAAACCAACGCATCCCCAAAACACAAATCGCAGAAATCTCAAAGAGCCAAAAAACACCAGAGAAAGCTTTTCACGCAACCATGGCGGCAACAGTGTCGTCTCCTTGGGCCAAGCCCGGCGCGTGGGCCCTCGACGCCGAAGAGCACGAAGCCGAGCTGGAACAACAACAGACCAAGATCGAAACGCAGCAGCCCCTCGCCGACTTCCCCTCTCTTTCCGCCGCCGCCGCGAAGCCGAAGAAGAAGAACAAGGGCCAGAAGGTCAGCCTCGCCGAGTTCTCCACCTTCGGCGGGCCCAAGCCCGCCGAGCCCGTGGGCCTGACCCACGAAGATCGGTTGGTTCTCCCGACCGGCCCGCGCGAGCGGACCGCCGAGGAGCTCGAACGGAACCGGATTGGCGGCGGGTTCAAGAGCTACGGCGGCGATCGGGGGAACCGCGAGGATTCGAGTTCGAAGTGGGGGAGTCAGAGGAGGGAAGGAGGAGGAGGGTTTGGGGGGAAAGAAGGAGGAGAGAGAGATGGGCCGTCGCGGGCGGATGAGGCCGACGACTGGGGCGCCGGGAAGAAATCGGCGGCGGGGAATGGGTTTGAGAGGAGGGAGAAAGGAGGGTTCTTTGGGTCCCAGTCGAAGGCGGATGAATCTGACAGCTGGGTCTCGAACAAGAGCTCGTTTTCGTCGGAGGGAAGGAGATACGGCGGCTCCGGCGGTGGGTTTGAGCGGGAGAGGAAGGTAGGGTTAGGGTTCAATTCGAACGGTGGCGGTGCGGATTCGGAGAGTTGGGGAAGGAAGAGGGAGGAGAGTAATGGTGGGATGGAGAGTACTGGGAGGCCGAGGCTCAATTTGCAGCCGAGGACATTGCCTGTTACTCTGCCTGTTGTGAGCAATGAAACCTCTCCGGTGGCGGTGCCTGAGGATGTGGCGGCAGCACCAAGGCCCAGGGGTTCGAACCCGTTTGGGGCCGCCAGGCCGAGAGAGGAGGTTTTGGCAGAGAAGGGGCAGGATTGGAAGAAGATTGACGAGCAGCTTGAGTCTGTGAAACTTAAGGAGAAGGAGGCTGTGGCTGCCGAAGGGGAGTCTTTTGGGAAGAGGAGTTTCGGGATGGGAAATGGGCGCTCTGGTGACCGCACCGTGGGAGCTTGGAGGAAACCTGTTGTGGCTGAGGCGGAGGCTGAGGCTGAGGCTCGTCCTCAGAGTGCTGGAAACGATGAGAGTAGGAGCAGCAATTCTGAGGAACCAGAACCGGAGAATGAGAATGTTAATGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

442

Amino Acids

47.6

Weight (kDa)

6.49

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-4B PF06273 53 - 367 9.3e-52 Plant specific eukaryotic initiation factor 4B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 710
AccB1I GGYRCC 2 cut(s) 614, 964
AccBSI CCGCTC 2 cut(s) 424, 778
AccII CGCG 6 cut(s) 182, 290, 418, 420, 498, 589
AclWI GGATC 1 cut(s) 20
AcyI GRCGYC 2 cut(s) 195, 615
AfaI GTAC 1 cut(s) 880
AfiI CCNNNNNNNGG 7 cut(s) 183, 351, 609, 688, 768, 1015, 1189
AflII CTTAAG 1 cut(s) 1100
AgsI TTSAA 3 cut(s) 63, 469, 805
AjnI CCWGG 2 cut(s) 995, 1022
AluBI AGCT 8 cut(s) 128, 217, 439, 474, 708, 726, 1084, 1196
AluI AGCT 8 cut(s) 128, 217, 439, 474, 708, 726, 1084, 1196
Alw21I GWGCWC 3 cut(s) 207, 441, 728
Alw26I GTCTC 2 cut(s) 165, 718
AlwI GGATC 1 cut(s) 20
ApaI GGGCCC 2 cut(s) 190, 357
ApeKI GCWGC 7 cut(s) 247, 250, 904, 983, 1081, 1121, 1278
AspLEI GCGC 4 cut(s) 182, 420, 617, 1173
AsuC2I CCSGG 2 cut(s) 177, 619
AsuHPI GGTGA 1 cut(s) 1190
AsuII TTCGAA 3 cut(s) 512, 809, 1004
AvaII GGWCC 3 cut(s) 4, 426, 678
AxyI CCTNAGG 1 cut(s) 969
BaeGI GKGCMC 2 cut(s) 190, 357
BanI GGYRCC 2 cut(s) 614, 964
BanII GRGCYC 5 cut(s) 190, 357, 372, 441, 728
Bbv12I GWGCWC 3 cut(s) 207, 441, 728
BbvCI CCTCAGC 3 cut(s) 1218, 1230, 1236
BbvI GCAGC 7 cut(s) 259, 262, 916, 995, 1093, 1108, 1290
BccI CCATC 4 cut(s) 32, 572, 865, 1153
BceAI ACGGC 3 cut(s) 493, 568, 769
BcgI CGANNNNNNTGC 4 cut(s) 138, 172, 898, 932
BciT130I CCWGG 2 cut(s) 997, 1024
BcnI CCSGG 2 cut(s) 177, 619
BcoDI GTCTC 2 cut(s) 165, 718
BfoI RGCGCY 2 cut(s) 618, 1174
BfrI CTTAAG 1 cut(s) 1100
BmcAI AGTACT 1 cut(s) 880
Bme1390I CCNGG 4 cut(s) 177, 619, 997, 1024
Bme18I GGWCC 3 cut(s) 4, 426, 678
BmrFI CCNGG 4 cut(s) 177, 619, 997, 1024
BmrI ACTGGG 3 cut(s) 619, 676, 891
BmsI GCATC 1 cut(s) 81
BmuI ACTGGG 3 cut(s) 619, 676, 891
Bpu10I CCTNAGC 3 cut(s) 1218, 1230, 1236
Bpu14I TTCGAA 3 cut(s) 512, 809, 1004
BpuEI CTTGAG 1 cut(s) 1106
BpuMI CCSGG 2 cut(s) 177, 619
BsaHI GRCGYC 2 cut(s) 195, 615
BsaI GGTCTC 1 cut(s) 718
BsaWI WCCGGW 3 cut(s) 450, 955, 1300
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 7 cut(s) 183, 351, 609, 688, 768, 1015, 1189
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 3 cut(s) 614, 682, 886
Bse21I CCTNAGG 1 cut(s) 969
Bse3DI GCAATG 2 cut(s) 914, 949
BseBI CCWGG 2 cut(s) 997, 1024
BseGI GGATG 7 cut(s) 24, 72, 601, 700, 876, 979, 1164
BseLI CCNNNNNNNGG 7 cut(s) 183, 351, 609, 688, 768, 1015, 1189
BseMI GCAATG 2 cut(s) 914, 949
BseMII CTCAG 6 cut(s) 960, 1209, 1221, 1227, 1262, 1278
BseNI ACTGG 3 cut(s) 614, 682, 886
BseRI GAGGAG 9 cut(s) 449, 544, 555, 558, 582, 667, 869, 1049, 1162
BseSI GKGCMC 2 cut(s) 190, 357
BseXI GCAGC 7 cut(s) 259, 262, 916, 995, 1093, 1108, 1290
BseYI CCCAGC 1 cut(s) 708
Bsh1236I CGCG 6 cut(s) 182, 290, 418, 420, 498, 589
Bsh1285I CGRYCG 2 cut(s) 411, 487
BshNI GGYRCC 2 cut(s) 614, 964
BsiEI CGRYCG 2 cut(s) 411, 487
BsiHKAI GWGCWC 3 cut(s) 207, 441, 728
BsiSI CCGG 7 cut(s) 177, 411, 451, 618, 762, 956, 1301
BslFI GGGAC 1 cut(s) 664
BslI CCNNNNNNNGG 7 cut(s) 183, 351, 609, 688, 768, 1015, 1189
BsmAI GTCTC 2 cut(s) 165, 718
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 664
Bso31I GGTCTC 1 cut(s) 718
Bsp119I TTCGAA 3 cut(s) 512, 809, 1004
Bsp120I GGGCCC 2 cut(s) 186, 353
Bsp1286I GDGCHC 6 cut(s) 190, 207, 357, 372, 441, 728
Bsp143I GATC 4 cut(s) 12, 237, 391, 484
Bsp19I CCATGG 1 cut(s) 141
BspCNI CTCAG 6 cut(s) 961, 1210, 1222, 1228, 1261, 1279
BspFNI CGCG 6 cut(s) 182, 290, 418, 420, 498, 589
BspPI GGATC 1 cut(s) 20
BspQI GCTCTTC 1 cut(s) 195
BspT104I TTCGAA 3 cut(s) 512, 809, 1004
BspT107I GGYRCC 2 cut(s) 614, 964
BspTI CTTAAG 1 cut(s) 1100
BspTNI GGTCTC 1 cut(s) 718
BsrBI CCGCTC 2 cut(s) 424, 778
BsrDI GCAATG 2 cut(s) 914, 949
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 3 cut(s) 614, 682, 886
BssAI RCCGGY 1 cut(s) 410
BssMI GATC 4 cut(s) 12, 237, 391, 484
BssNI GRCGYC 2 cut(s) 195, 615
BssT1I CCWWGG 3 cut(s) 141, 164, 989
Bst2UI CCWGG 2 cut(s) 997, 1024
Bst4CI ACNGT 4 cut(s) 8, 154, 815, 1189
Bst6I CTCTTC 3 cut(s) 195, 842, 1139
BstACI GRCGYC 2 cut(s) 195, 615
BstAFI CTTAAG 1 cut(s) 1100
BstBI TTCGAA 3 cut(s) 512, 809, 1004
BstC8I GCNNGC 5 cut(s) 353, 363, 416, 422, 591
BstDEI CTNAG 6 cut(s) 969, 1218, 1230, 1236, 1248, 1287
BstDSI CCRYGG 3 cut(s) 141, 372, 1188
BstEII GGTNACC 1 cut(s) 1178
BstF5I GGATG 7 cut(s) 24, 72, 601, 700, 876, 979, 1164
BstFNI CGCG 6 cut(s) 182, 290, 418, 420, 498, 589
BstH2I RGCGCY 2 cut(s) 618, 1174
BstHHI GCGC 4 cut(s) 182, 420, 617, 1173
BstKTI GATC 4 cut(s) 15, 240, 394, 487
BstMAI GTCTC 2 cut(s) 165, 718
BstMBI GATC 4 cut(s) 12, 237, 391, 484
BstMCI CGRYCG 2 cut(s) 411, 487
BstNI CCWGG 2 cut(s) 997, 1024
BstPI GGTNACC 1 cut(s) 1178
BstSCI CCNGG 4 cut(s) 175, 617, 995, 1022
BstSLI GKGCMC 2 cut(s) 190, 357
BstUI CGCG 6 cut(s) 182, 290, 418, 420, 498, 589
BstV1I GCAGC 7 cut(s) 259, 262, 916, 995, 1093, 1108, 1290
Bsu36I CCTNAGG 1 cut(s) 969
BtgI CCRYGG 3 cut(s) 141, 372, 1188
BtsCI GGATG 7 cut(s) 24, 72, 601, 700, 876, 979, 1164
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 5 cut(s) 353, 363, 416, 422, 591
CfoI GCGC 4 cut(s) 182, 420, 617, 1173
Cfr10I RCCGGY 1 cut(s) 410
CpoI CGGWCCG 1 cut(s) 426
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 879
CspI CGGWCCG 1 cut(s) 426
CviAII CATG 1 cut(s) 142
CviQI GTAC 1 cut(s) 879
DdeI CTNAG 6 cut(s) 969, 1218, 1230, 1236, 1248, 1287
DinI GGCGCC 1 cut(s) 616
DpnI GATC 4 cut(s) 14, 239, 393, 486
DpnII GATC 4 cut(s) 12, 237, 391, 484
DrdI GACNNNNNNGTC 1 cut(s) 710
DseDI GACNNNNNNGTC 1 cut(s) 710
Eam1104I CTCTTC 3 cut(s) 195, 842, 1139
EarI CTCTTC 3 cut(s) 195, 842, 1139
EciI GGCGGA 4 cut(s) 268, 608, 707, 1238
Ecl136II GAGCTC 2 cut(s) 439, 726
Eco130I CCWWGG 3 cut(s) 141, 164, 989
Eco24I GRGCYC 5 cut(s) 190, 357, 372, 441, 728
Eco31I GGTCTC 1 cut(s) 718
Eco47I GGWCC 3 cut(s) 4, 426, 678
Eco53kI GAGCTC 2 cut(s) 439, 726
Eco81I CCTNAGG 1 cut(s) 969
Eco91I GGTNACC 1 cut(s) 1178
EcoICRI GAGCTC 2 cut(s) 439, 726
EcoO109I RGGNCCY 2 cut(s) 187, 678
EcoO65I GGTNACC 1 cut(s) 1178
EcoRII CCWGG 2 cut(s) 995, 1022
EcoT14I CCWWGG 3 cut(s) 141, 164, 989
EcoT38I GRGCYC 5 cut(s) 190, 357, 372, 441, 728
EgeI GGCGCC 1 cut(s) 616
EheI GGCGCC 1 cut(s) 616
ErhI CCWWGG 3 cut(s) 141, 164, 989
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 1 cut(s) 145
FaiI YATR 2 cut(s) 36, 143
FaqI GGGAC 1 cut(s) 664
FatI CATG 1 cut(s) 141
FauI CCCGC 7 cut(s) 344, 370, 423, 455, 582, 628, 771
FokI GGATG 7 cut(s) 11, 59, 608, 707, 883, 986, 1171
FriOI GRGCYC 5 cut(s) 190, 357, 372, 441, 728
GlaI GCGC 4 cut(s) 181, 419, 616, 1172
GsaI CCCAGC 1 cut(s) 712
HaeII RGCGCY 2 cut(s) 618, 1174
HapII CCGG 7 cut(s) 177, 411, 451, 618, 762, 956, 1301
HgaI GACGC 1 cut(s) 203
HhaI GCGC 4 cut(s) 182, 420, 617, 1173
Hin1I GRCGYC 2 cut(s) 195, 615
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 4 cut(s) 180, 418, 615, 1171
HinP1I GCGC 4 cut(s) 180, 418, 615, 1171
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 6 cut(s) 503, 523, 698, 827, 1088, 1133
HpaII CCGG 7 cut(s) 177, 411, 451, 618, 762, 956, 1301
HphI GGTGA 1 cut(s) 1190
Hpy188I TCNGA 7 cut(s) 12, 528, 703, 739, 832, 1251, 1288
Hpy188III TCNNGA 4 cut(s) 406, 469, 715, 1156
Hpy99I CGWCG 5 cut(s) 12, 197, 589, 608, 739
HpyCH4III ACNGT 4 cut(s) 8, 154, 815, 1189
HpyCH4V TGCA 1 cut(s) 904
HpyF3I CTNAG 6 cut(s) 969, 1218, 1230, 1236, 1248, 1287
Hsp92I GRCGYC 2 cut(s) 195, 615
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 4 cut(s) 180, 418, 615, 1171
KasI GGCGCC 1 cut(s) 614
KflI GGGWCCC 1 cut(s) 678
Kzo9I GATC 4 cut(s) 12, 237, 391, 484
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 4 cut(s) 436, 764, 1193, 1275
Lsp1109I GCAGC 7 cut(s) 259, 262, 916, 995, 1093, 1108, 1290
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 922, 1178
MalI GATC 4 cut(s) 14, 239, 393, 486
MbiI CCGCTC 2 cut(s) 424, 778
MboI GATC 4 cut(s) 12, 237, 391, 484
MhlI GDGCHC 6 cut(s) 190, 207, 357, 372, 441, 728
MluCI AATT 3 cut(s) 805, 898, 1282
Mly113I GGCGCC 1 cut(s) 615
MlyI GAGTC 3 cut(s) 532, 1097, 1142
MmeI TCCRAC 1 cut(s) 717
MseI TTAA 2 cut(s) 1101, 1317
MspA1I CMGCKG 1 cut(s) 708
MspCI CTTAAG 1 cut(s) 1100
MspI CCGG 7 cut(s) 177, 411, 451, 618, 762, 956, 1301
MspR9I CCNGG 4 cut(s) 177, 619, 997, 1024
MvaI CCWGG 2 cut(s) 997, 1024
MvnI CGCG 6 cut(s) 182, 290, 418, 420, 498, 589
NarI GGCGCC 1 cut(s) 615
NciI CCSGG 2 cut(s) 177, 619
NcoI CCATGG 1 cut(s) 141
NdeII GATC 4 cut(s) 12, 237, 391, 484
NlaIII CATG 1 cut(s) 145
NmeAIII GCCGAG 7 cut(s) 238, 358, 391, 457, 915, 933, 1053
NmuCI GTSAC 1 cut(s) 1178
NspV TTCGAA 3 cut(s) 512, 809, 1004
PasI CCCWGGG 1 cut(s) 996
PciSI GCTCTTC 1 cut(s) 195
PfeI GAWTC 3 cut(s) 503, 698, 827
Ple19I CGATCG 1 cut(s) 487
PleI GAGTC 3 cut(s) 531, 1096, 1141
PluTI GGCGCC 1 cut(s) 618
PpsI GAGTC 3 cut(s) 531, 1096, 1141
PpuMI RGGWCCY 1 cut(s) 678
Psp124BI GAGCTC 2 cut(s) 441, 728
Psp5II RGGWCCY 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 995, 1022
PspEI GGTNACC 1 cut(s) 1178
PspFI CCCAGC 1 cut(s) 708
PspGI CCWGG 2 cut(s) 995, 1022
PspOMI GGGCCC 2 cut(s) 186, 353
PspPPI RGGWCCY 1 cut(s) 678
PvuI CGATCG 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 708
RsaI GTAC 1 cut(s) 880
RsaNI GTAC 1 cut(s) 879
Rsr2I CGGWCCG 1 cut(s) 426
RsrII CGGWCCG 1 cut(s) 426
SacI GAGCTC 2 cut(s) 441, 728
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 1101, 1317
Sau3AI GATC 4 cut(s) 12, 237, 391, 484
ScaI AGTACT 1 cut(s) 880
SchI GAGTC 3 cut(s) 532, 1097, 1142
ScrFI CCNGG 4 cut(s) 177, 619, 997, 1024
SduI GDGCHC 6 cut(s) 190, 207, 357, 372, 441, 728
SfaNI GCATC 1 cut(s) 81
SfoI GGCGCC 1 cut(s) 616
SfuI TTCGAA 3 cut(s) 512, 809, 1004
SinI GGWCC 3 cut(s) 4, 426, 678
SmlI CTYRAG 2 cut(s) 1085, 1100
SmoI CTYRAG 2 cut(s) 1085, 1100
Sse9I AATT 3 cut(s) 805, 898, 1282
SspDI GGCGCC 1 cut(s) 614
SstI GAGCTC 2 cut(s) 441, 728
StyD4I CCNGG 4 cut(s) 175, 617, 995, 1022
StyI CCWWGG 3 cut(s) 141, 164, 989
TaaI ACNGT 4 cut(s) 8, 154, 815, 1189
TaqI TCGA 9 cut(s) 192, 240, 441, 506, 512, 686, 716, 809, 1004
TasI AATT 3 cut(s) 805, 898, 1282
TatI WGTACW 1 cut(s) 878
TfiI GAWTC 3 cut(s) 503, 698, 827
Tru1I TTAA 2 cut(s) 1101, 1317
Tru9I TTAA 2 cut(s) 1101, 1317
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 1178
TseI GCWGC 7 cut(s) 247, 250, 904, 983, 1081, 1121, 1278
Tsp45I GTSAC 1 cut(s) 1178
TspDTI ATGAA 2 cut(s) 711, 960
TspGWI ACGGA 1 cut(s) 460
TspRI CASTG 1 cut(s) 159
Vha464I CTTAAG 1 cut(s) 1100
VpaK11BI GGWCC 3 cut(s) 4, 426, 678
ZrmI AGTACT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.