Rh6BG142300

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003852
Physical Location & Seq
Forward (+)
22765475 .. 22771221
5747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG142300.1

Sequence Viewer

Length: 753 bp
ATGTCGGAAGATAATGTATCTGTAAATCTGTATCTCTTTTCCAGGGACTCCATGGTAGATCCTGCAGCTGTGTTTGGGATGCTTTTTGGGAGTGAATACTTTGATGATTATGTTGGCCAACTTGCTTTGGCTTCTTTATCATCTGTTGAAGTGGATGAAGATACACAGGATCCTGAAGTCCATAGGCAGAGAGTTCAGGAAAAAATGAGGGCATTGCGGAAGGAAAGGGAAGAAAAGCTCATAACTATTCTGAAAGATCGTATACAACCATTTGTGGATGGTCGTACAGATGAGTTTGTAAGATGGGCAAATGTAGAAGCACGGCGCCTCTCAGCAGCTGCCTTTGGCGAGGCTATGCTACATACGATTGGTTATATTTATACTAGGAAAGCTGCAAGAGAACTTGGAAAAGACAAGCGGTACATGAACGTACCCTTTCTAGCAGAATGGGTGCGAGATAAAGGACATCAGATAAAGTCACAAGTGTCAGCAGCTTCAGGTGCTGTATCTTTAATTCAGCTACAGGAGGATCTGAAGAAGTTAAACCAAGGTGAAAACAGGGAAGAGAACTTAACGAAAGCCATTGAAGAGAAGAAGGATGCAGTGCTTAATTCCCTCTGGCAGATCAATGTGGTTGATATTGAGTCAACCTTGTCACATGTCTGCCTAGCAGTGAGTATCAGTATTCCCTTATTTAGCTTAATAAATAATAATCTTTCTTACAAGCTATTACTTTATGGTTTTACACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

250

Amino Acids

28.51

Weight (kDa)

5.54

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ-X PF14308 73 - 225 4.6e-43 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 262
AciI CCGC 2 cut(s) 217, 418
AclWI GGATC 4 cut(s) 53, 164, 177, 537
AcoI YGGCCR 1 cut(s) 115
AcuI CTGAAG 3 cut(s) 195, 480, 554
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 3 cut(s) 286, 422, 432
AflIII ACRYGT 2 cut(s) 658, 746
AgsI TTSAA 2 cut(s) 149, 587
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 8 cut(s) 68, 238, 338, 392, 494, 520, 699, 727
AluI AGCT 8 cut(s) 68, 238, 338, 392, 494, 520, 699, 727
AlwI GGATC 4 cut(s) 53, 164, 177, 537
AlwNI CAGNNNCTG 2 cut(s) 338, 503
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 5 cut(s) 65, 335, 338, 392, 491
AspLEI GCGC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 563
BalI TGGCCA 1 cut(s) 117
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 324
BbvI GCAGC 5 cut(s) 77, 325, 347, 379, 503
BccI CCATC 2 cut(s) 272, 297
BceAI ACGGC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 43
BfaI CTAG 3 cut(s) 384, 440, 668
BfmI CTRYAG 2 cut(s) 63, 521
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 5 cut(s) 66, 336, 339, 393, 492
BlsI GCNGC 5 cut(s) 67, 337, 340, 394, 493
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 171, 326
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 69, 589
BsaHI GRCGYC 1 cut(s) 325
BsaJI CCNNGG 3 cut(s) 42, 51, 547
Bse3DI GCAATG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 42, 51, 547
BseGI GGATG 4 cut(s) 84, 160, 283, 604
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 345
BseXI GCAGC 5 cut(s) 77, 325, 347, 379, 503
BshFI GGCC 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 324
BslFI GGGAC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 5 cut(s) 58, 169, 256, 529, 624
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 2 cut(s) 217, 418
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 344
BspLI GGNNCC 2 cut(s) 171, 326
BspMAI CTGCAG 1 cut(s) 67
BspPI GGATC 4 cut(s) 53, 164, 177, 537
BspT107I GGYRCC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 42, 51, 547
BssMI GATC 5 cut(s) 58, 169, 256, 529, 624
BssNAI GTATAC 1 cut(s) 263
BssNI GRCGYC 1 cut(s) 325
BssT1I CCWWGG 2 cut(s) 51, 547
Bst1107I GTATAC 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 558, 582
BstACI GRCGYC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 331
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 4 cut(s) 84, 160, 283, 604
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 5 cut(s) 61, 172, 259, 532, 627
BstMBI GATC 5 cut(s) 58, 169, 256, 529, 624
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 662
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 2 cut(s) 63, 521
BstV1I GCAGC 5 cut(s) 77, 325, 347, 379, 503
BstX2I RGATCY 3 cut(s) 58, 169, 529
BstYI RGATCY 3 cut(s) 58, 169, 529
BstZ17I GTATAC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 4 cut(s) 84, 160, 283, 604
BtsI GCAGTG 2 cut(s) 609, 678
BtsIMutI CAGTG 2 cut(s) 609, 678
CaiI CAGNNNCTG 2 cut(s) 338, 503
CfoI GCGC 1 cut(s) 327
Csp6I GTAC 3 cut(s) 285, 421, 431
CviAII CATG 3 cut(s) 52, 424, 659
CviQI GTAC 3 cut(s) 285, 421, 431
DdeI CTNAG 1 cut(s) 331
DinI GGCGCC 1 cut(s) 326
DpnI GATC 5 cut(s) 60, 171, 258, 531, 626
DpnII GATC 5 cut(s) 58, 169, 256, 529, 624
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 558, 582
EarI CTCTTC 2 cut(s) 558, 582
Eco130I CCWWGG 2 cut(s) 51, 547
Eco57I CTGAAG 3 cut(s) 195, 480, 554
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 2 cut(s) 51, 547
EgeI GGCGCC 1 cut(s) 326
EheI GGCGCC 1 cut(s) 326
ErhI CCWWGG 2 cut(s) 51, 547
FaeI CATG 3 cut(s) 55, 427, 662
FaqI GGGAC 1 cut(s) 59
FatI CATG 3 cut(s) 51, 423, 658
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 5 cut(s) 66, 336, 339, 393, 492
FokI GGATG 4 cut(s) 91, 167, 290, 611
Fsp4HI GCNGC 5 cut(s) 66, 336, 339, 393, 492
FspBI CTAG 3 cut(s) 384, 440, 668
GlaI GCGC 1 cut(s) 326
GluI GCNGC 5 cut(s) 66, 336, 339, 393, 492
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 117
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 3 cut(s) 55, 427, 662
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HinfI GANTC 2 cut(s) 47, 644
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 2 cut(s) 263, 648
Hpy188I TCNGA 4 cut(s) 7, 252, 471, 534
Hpy188III TCNNGA 2 cut(s) 173, 197
Hpy8I GTNNAC 2 cut(s) 263, 648
HpyAV CCTTC 2 cut(s) 214, 589
HpyCH4IV ACGT 2 cut(s) 429, 748
HpyCH4V TGCA 3 cut(s) 65, 395, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 1 cut(s) 331
HpySE526I ACGT 2 cut(s) 429, 748
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 3 cut(s) 55, 427, 662
HspAI GCGC 1 cut(s) 325
KasI GGCGCC 1 cut(s) 324
Kzo9I GATC 5 cut(s) 58, 169, 256, 529, 624
Lsp1109I GCAGC 5 cut(s) 77, 325, 347, 379, 503
LweI GCATC 2 cut(s) 69, 589
MaeI CTAG 3 cut(s) 384, 440, 668
MaeII ACGT 2 cut(s) 429, 748
MaeIII GTNAC 2 cut(s) 477, 654
MalI GATC 5 cut(s) 60, 171, 258, 531, 626
MboI GATC 5 cut(s) 58, 169, 256, 529, 624
MboII GAAGA 7 cut(s) 20, 170, 242, 547, 575, 599, 604
MflI RGATCY 3 cut(s) 58, 169, 529
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 2 cut(s) 513, 610
MluNI TGGCCA 1 cut(s) 117
Mly113I GGCGCC 1 cut(s) 325
MlyI GAGTC 2 cut(s) 41, 653
MnlI CCTC 5 cut(s) 201, 338, 343, 520, 626
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MseI TTAA 5 cut(s) 512, 542, 572, 609, 701
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 2 cut(s) 68, 338
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 500
NarI GGCGCC 1 cut(s) 325
NcoI CCATGG 1 cut(s) 51
NdeII GATC 5 cut(s) 58, 169, 256, 529, 624
NlaIII CATG 3 cut(s) 55, 427, 662
NlaIV GGNNCC 2 cut(s) 171, 326
NmuCI GTSAC 2 cut(s) 477, 654
NspI RCATGY 1 cut(s) 662
PciI ACATGT 1 cut(s) 658
PkrI GCNGC 5 cut(s) 67, 337, 340, 394, 493
PleI GAGTC 2 cut(s) 41, 652
PluTI GGCGCC 1 cut(s) 328
PpsI GAGTC 2 cut(s) 41, 652
PscI ACATGT 1 cut(s) 658
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 171, 326
PstI CTGCAG 1 cut(s) 67
PstNI CAGNNNCTG 2 cut(s) 338, 503
PsuI RGATCY 3 cut(s) 58, 169, 529
PvuII CAGCTG 2 cut(s) 68, 338
RsaI GTAC 3 cut(s) 286, 422, 432
RsaNI GTAC 3 cut(s) 285, 421, 431
SaqAI TTAA 5 cut(s) 512, 542, 572, 609, 701
SatI GCNGC 5 cut(s) 66, 336, 339, 393, 492
Sau3AI GATC 5 cut(s) 58, 169, 256, 529, 624
SchI GAGTC 2 cut(s) 41, 653
ScrFI CCNGG 1 cut(s) 43
SfaNI GCATC 2 cut(s) 69, 589
SfcI CTRYAG 2 cut(s) 63, 521
SfoI GGCGCC 1 cut(s) 326
Sse9I AATT 2 cut(s) 513, 610
SsiI CCGC 2 cut(s) 217, 418
SspDI GGCGCC 1 cut(s) 324
SspMI CTAG 3 cut(s) 384, 440, 668
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 2 cut(s) 51, 547
TaiI ACGT 2 cut(s) 432, 751
TasI AATT 2 cut(s) 513, 610
Tru1I TTAA 5 cut(s) 512, 542, 572, 609, 701
Tru9I TTAA 5 cut(s) 512, 542, 572, 609, 701
TscAI CASTG 2 cut(s) 609, 678
TseFI GTSAC 2 cut(s) 477, 654
TseI GCWGC 5 cut(s) 65, 335, 338, 392, 491
Tsp45I GTSAC 2 cut(s) 477, 654
TspDTI ATGAA 2 cut(s) 171, 440
TspRI CASTG 2 cut(s) 609, 678
XceI RCATGY 1 cut(s) 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 262
XspI CTAG 3 cut(s) 384, 440, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.