Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007599.1

Orthogroup ID

OG0003852

Physical Location & Seq

Genomic Coordinates Reverse (-)

2645 .. 10384

Gene Structure 7740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007599.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

atggtgaaggacactgccttttacgatgtgttgggtgtcaatgtcgaagcctccgctgctgatattaaaaaggcttactatctcaaggcaaggcaggttcacccagataaaaatccgggagatccaaaggctgctgaaaatttccaagcacttggtgaggcttatcaggttctaagtgatccagaaaagcgtgaagcatatgacaagaatggaaaggaaggcataccacaggactccatggtagatcctgcagctgtgtttgggatgctttttgggagtgaatactttgatgattatgttggccaacttgctttggcttctttatcatctgttgaagtggacgaagatacacaggatcctgaagtccataggcagagagttcaggaaaaaatgagggcattgcggaaggaaagggaagaaaagctcataactattctgaaagatcgtatacaaccatttgtggatggtcgtacagatgagtttgtaagatgggcaaatgtagaagcacggcgcctctcagcagctgcctttggcgaggctatgctacatacgattggttatatttatactaggaaagctgcaagagaacttggaaaagacaagcggtacatgaacgtaccctttctagcagaatgggtgcgagataaaggacatcagataaagtcacaagtgtcagcagcttcaggtgctgtatctttaattcagctacaggaagatctgaagaagttaaaccaaggtgaaaacagggaagagaacttaacgaaagccattgaagagaagaaggatgcagtgcttaattccctctggcagatcaatgtggttgatattgagtcaaccttgtcacatgtctgcctagcagtacttaaagaccccactgtgtccaaggatgttttgaaggcacgggctagagcattgagaaagttgggaacaatcttccaaggtgcaaaggcagcttacagtagagagaacagtctccgccatgaaagggacgagaaaatagattcagcgaagttcactatccttattctcctgatttctgcagcatcacttttatcaacctcttttgcagcaggtagacaacccaagtttgtcaataagttggctaaagaagcagtggatgaaactccagaggaagtattagggaagccattgagccacaaggaagctgccagaatccatgaaaggcttctcagggctaacacaaaagattatggacgatacgatccagcacctgctcttgttaagcctcctttcaagctcattccaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

423

Amino Acids

47.48

Weight (kDa)

8.27

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT4G39150 AT4G39150 AT4G39150
fragaria_vesca	FvH4_2g09560 FvH4_2g09560 FvH4_2g09560
malus_domestica	MD05G1061900.v1.1 MD10G1069700.v1.1
prunus_persica	Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1
pyrus_communis	pycom05g05330 pycom10g05530
rosa_chinensis	RchiOBHm_Chr6g0265851
rosa_laevigata	RLG00000014153
rosa_multiflora	Rmu_sc0007599.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202300
rosa_rugosa	Rorug06G0020800 Rorug06G0020800 Rorug06G0020800 Rorug06G0020900 Rorug06G0020900 Rorug06G0021000
rosa_samantha	Rh6AG142700 Rh6BG142300 Rh6CG139000 Rh6DG126400
rosa_wichuraiana	Rw6G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1240
Acc36I	ACCTGC	3 cut(s)	85, 1061, 1240
AccB1I	GGYRCC	1 cut(s)	510
AccI	GTMKAC	2 cut(s)	448, 1075
AciI	CCGC	4 cut(s)	54, 403, 604, 976
AclWI	GGATC	6 cut(s)	116, 173, 239, 350, 363, 1217
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	3 cut(s)	381, 666, 740
AcyI	GRCGYC	1 cut(s)	511
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	4 cut(s)	472, 608, 618, 861
AfiI	CCNNNNNNNGG	1 cut(s)	985
AflIII	ACRYGT	1 cut(s)	844
AgsI	TTSAA	4 cut(s)	335, 773, 895, 1255
AluBI	AGCT	9 cut(s)	254, 424, 524, 578, 680, 706, 953, 1166, 1258
AluI	AGCT	9 cut(s)	254, 424, 524, 578, 680, 706, 953, 1166, 1258
Alw26I	GTCTC	1 cut(s)	977
AlwI	GGATC	6 cut(s)	116, 173, 239, 350, 363, 1217
AlwNI	CAGNNNCTG	3 cut(s)	524, 689, 1232
AoxI	GGCC	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	1185
AspLEI	GCGC	1 cut(s)	513
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	4 cut(s)	16, 92, 167, 749
BalI	TGGCCA	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	510
BccI	CCATC	2 cut(s)	458, 483
BceAI	ACGGC	1 cut(s)	524
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	977
BfaI	CTAG	4 cut(s)	570, 626, 854, 906
BfmI	CTRYAG	3 cut(s)	249, 707, 1038
BfoI	RGCGCY	1 cut(s)	514
BfuAI	ACCTGC	3 cut(s)	85, 1061, 1240
BglII	AGATCT	1 cut(s)	715
BmcAI	AGTACT	1 cut(s)	861
Bme1390I	CCNGG	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	357, 512
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	3 cut(s)	255, 775, 1052
BpmI	CTGGAG	1 cut(s)	1110
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	511
BsaJI	CCNNGG	4 cut(s)	237, 733, 882, 937
Bsc4I	CCNNNNNNNGG	1 cut(s)	985
Bse3DI	GCAATG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	4 cut(s)	237, 733, 882, 937
BseGI	GGATG	5 cut(s)	270, 469, 790, 892, 1123
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	985
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	531, 1204
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	1001
BslI	CCNNNNNNNGG	1 cut(s)	985
BsmAI	GTCTC	1 cut(s)	977
BsmFI	GGGAC	1 cut(s)	1001
BsnI	GGCC	1 cut(s)	303
Bsp143I	GATC	8 cut(s)	121, 178, 244, 355, 442, 715, 810, 1222
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	4 cut(s)	54, 403, 604, 976
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	2 cut(s)	530, 1203
BspLI	GGNNCC	2 cut(s)	357, 512
BspMAI	CTGCAG	2 cut(s)	253, 1042
BspMI	ACCTGC	3 cut(s)	85, 1061, 1240
BspPI	GGATC	6 cut(s)	116, 173, 239, 350, 363, 1217
BspT107I	GGYRCC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	398
BssECI	CCNNGG	4 cut(s)	237, 733, 882, 937
BssMI	GATC	8 cut(s)	121, 178, 244, 355, 442, 715, 810, 1222
BssNAI	GTATAC	1 cut(s)	449
BssNI	GRCGYC	1 cut(s)	511
BssT1I	CCWWGG	4 cut(s)	237, 733, 882, 937
Bst1107I	GTATAC	1 cut(s)	449
Bst4CI	ACNGT	3 cut(s)	877, 959, 971
Bst6I	CTCTTC	2 cut(s)	744, 768
BstACI	GRCGYC	1 cut(s)	511
BstDEI	CTNAG	3 cut(s)	173, 517, 1190
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	5 cut(s)	270, 469, 790, 892, 1123
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	8 cut(s)	124, 181, 247, 358, 445, 718, 813, 1225
BstMAI	GTCTC	1 cut(s)	977
BstMBI	GATC	8 cut(s)	121, 178, 244, 355, 442, 715, 810, 1222
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 686, 950, 1109
BstNSI	RCATGY	1 cut(s)	848
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	3 cut(s)	249, 707, 1038
BstX2I	RGATCY	4 cut(s)	121, 244, 355, 715
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	4 cut(s)	121, 244, 355, 715
BstZ17I	GTATAC	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	5 cut(s)	270, 469, 790, 892, 1123
BtsI	GCAGTG	3 cut(s)	12, 795, 1119
BtsIMutI	CAGTG	4 cut(s)	12, 795, 873, 1119
BveI	ACCTGC	3 cut(s)	85, 1061, 1240
CaiI	CAGNNNCTG	3 cut(s)	524, 689, 1232
CfoI	GCGC	1 cut(s)	513
Csp6I	GTAC	4 cut(s)	471, 607, 617, 860
CviAII	CATG	5 cut(s)	238, 610, 845, 980, 1178
CviQI	GTAC	4 cut(s)	471, 607, 617, 860
DdeI	CTNAG	3 cut(s)	173, 517, 1190
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	8 cut(s)	123, 180, 246, 357, 444, 717, 812, 1224
DpnII	GATC	8 cut(s)	121, 178, 244, 355, 442, 715, 810, 1222
DraIII	CACNNNGTG	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	744, 768
EarI	CTCTTC	2 cut(s)	744, 768
EciI	GGCGGA	1 cut(s)	965
Eco130I	CCWWGG	4 cut(s)	237, 733, 882, 937
Eco57I	CTGAAG	3 cut(s)	381, 666, 740
EcoT14I	CCWWGG	4 cut(s)	237, 733, 882, 937
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
ErhI	CCWWGG	4 cut(s)	237, 733, 882, 937
FaeI	CATG	5 cut(s)	241, 613, 848, 983, 1181
FaqI	GGGAC	1 cut(s)	1001
FatI	CATG	5 cut(s)	237, 609, 844, 979, 1177
FauNDI	CATATG	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	448, 1075
FokI	GGATG	5 cut(s)	277, 476, 797, 899, 1130
FspBI	CTAG	4 cut(s)	570, 626, 854, 906
GlaI	GCGC	1 cut(s)	512
GsuI	CTGGAG	1 cut(s)	1110
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	116
HhaI	GCGC	1 cut(s)	513
Hin1I	GRCGYC	1 cut(s)	511
Hin1II	CATG	5 cut(s)	241, 613, 848, 983, 1181
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HinfI	GANTC	4 cut(s)	233, 830, 1001, 1173
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	4 cut(s)	16, 92, 167, 749
Hpy166II	GTNNAC	6 cut(s)	100, 340, 449, 834, 1014, 1076
Hpy188I	TCNGA	3 cut(s)	438, 657, 720
Hpy188III	TCNNGA	5 cut(s)	182, 359, 383, 1030, 1127
Hpy8I	GTNNAC	6 cut(s)	100, 340, 449, 834, 1014, 1076
HpyAV	CCTTC	4 cut(s)	212, 400, 775, 889
HpyCH4III	ACNGT	3 cut(s)	877, 959, 971
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	6 cut(s)	251, 581, 788, 944, 1040, 1067
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 686, 950, 1109
HpyF3I	CTNAG	3 cut(s)	173, 517, 1190
HpySE526I	ACGT	1 cut(s)	615
Hsp92I	GRCGYC	1 cut(s)	511
Hsp92II	CATG	5 cut(s)	241, 613, 848, 983, 1181
HspAI	GCGC	1 cut(s)	511
KasI	GGCGCC	1 cut(s)	510
Kzo9I	GATC	8 cut(s)	121, 178, 244, 355, 442, 715, 810, 1222
LweI	GCATC	3 cut(s)	255, 775, 1052
MaeI	CTAG	4 cut(s)	570, 626, 854, 906
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	2 cut(s)	663, 840
MalI	GATC	8 cut(s)	123, 180, 246, 357, 444, 717, 812, 1224
MboI	GATC	8 cut(s)	121, 178, 244, 355, 442, 715, 810, 1222
MboII	GAAGA	8 cut(s)	356, 428, 725, 733, 761, 785, 790, 925
MflI	RGATCY	4 cut(s)	121, 244, 355, 715
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	3 cut(s)	139, 699, 796
MluNI	TGGCCA	1 cut(s)	303
Mly113I	GGCGCC	1 cut(s)	511
MlyI	GAGTC	2 cut(s)	227, 839
MnlI	CCTC	9 cut(s)	61, 151, 387, 524, 529, 812, 1069, 1123, 1257
Mox20I	TGGCCA	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	1185
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	7 cut(s)	66, 698, 728, 758, 795, 864, 1242
Msp20I	TGGCCA	1 cut(s)	303
MspA1I	CMGCKG	3 cut(s)	56, 254, 524
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	4 cut(s)	56, 686, 950, 1109
NarI	GGCGCC	1 cut(s)	511
NciI	CCSGG	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	237
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	8 cut(s)	121, 178, 244, 355, 442, 715, 810, 1222
NlaIII	CATG	5 cut(s)	241, 613, 848, 983, 1181
NlaIV	GGNNCC	2 cut(s)	357, 512
NmuCI	GTSAC	2 cut(s)	663, 840
NspI	RCATGY	1 cut(s)	848
PaqCI	CACCTGC	1 cut(s)	1240
PciI	ACATGT	1 cut(s)	844
PdmI	GAANNNNTTC	1 cut(s)	1185
PfeI	GAWTC	2 cut(s)	1001, 1173
PfoI	TCCNGGA	1 cut(s)	115
PleI	GAGTC	2 cut(s)	227, 838
PluTI	GGCGCC	1 cut(s)	514
PpsI	GAGTC	2 cut(s)	227, 838
PscI	ACATGT	1 cut(s)	844
PspN4I	GGNNCC	2 cut(s)	357, 512
PstI	CTGCAG	2 cut(s)	253, 1042
PstNI	CAGNNNCTG	3 cut(s)	524, 689, 1232
PsuI	RGATCY	4 cut(s)	121, 244, 355, 715
PvuII	CAGCTG	2 cut(s)	254, 524
RsaI	GTAC	4 cut(s)	472, 608, 618, 861
RsaNI	GTAC	4 cut(s)	471, 607, 617, 860
SaqAI	TTAA	7 cut(s)	66, 698, 728, 758, 795, 864, 1242
Sau3AI	GATC	8 cut(s)	121, 178, 244, 355, 442, 715, 810, 1222
ScaI	AGTACT	1 cut(s)	861
SchI	GAGTC	2 cut(s)	227, 839
ScrFI	CCNGG	1 cut(s)	117
SfaNI	GCATC	3 cut(s)	255, 775, 1052
SfcI	CTRYAG	3 cut(s)	249, 707, 1038
SfoI	GGCGCC	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	3 cut(s)	139, 699, 796
SsiI	CCGC	4 cut(s)	54, 403, 604, 976
SspDI	GGCGCC	1 cut(s)	510
SspMI	CTAG	4 cut(s)	570, 626, 854, 906
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	4 cut(s)	237, 733, 882, 937
TaaI	ACNGT	3 cut(s)	877, 959, 971
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	139, 699, 796
TatI	WGTACW	1 cut(s)	859
TfiI	GAWTC	2 cut(s)	1001, 1173
Tru1I	TTAA	7 cut(s)	66, 698, 728, 758, 795, 864, 1242
Tru9I	TTAA	7 cut(s)	66, 698, 728, 758, 795, 864, 1242
TscAI	CASTG	4 cut(s)	19, 795, 880, 1119
TseFI	GTSAC	2 cut(s)	663, 840
Tsp45I	GTSAC	2 cut(s)	663, 840
TspDTI	ATGAA	4 cut(s)	626, 996, 1134, 1194
TspRI	CASTG	4 cut(s)	19, 795, 880, 1119
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	848
XmiI	GTMKAC	2 cut(s)	448, 1075
XmnI	GAANNNNTTC	1 cut(s)	1185
XspI	CTAG	4 cut(s)	570, 626, 854, 906
ZrmI	AGTACT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.