Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003852

Physical Location & Seq

Genomic Coordinates Reverse (-)

9641989 .. 9646129

Gene Structure 4141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1069700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGATTGCATTGCTACTTACTTTCAATTGGGGTTGTGATCTAAGAAACATGGTGAAGGACACTGCTTACTATGAAGTACTGGATGTCAATGTCGACGCCTCTTATGCTGAGATTAAAAAGGCTTACTATATCAAGGCAAGGCGTGTTCACCCTGATAAAAATCCTGGAGATCCAAAGGCTGCCGAAAATTTCCAGGCACTGGGCGAGGCTTATCAGGTTTTAAGTGATCCAGAGAAGCGTGAAGCATATGACAAGCACGGAAAGGCAGGCATACTACAGGATTCCATGGTAGACCCTGCAGCTGTGTTTGGGATGCTTTTTGGGAGCGAATTCTTCGAAGATTATGTTGGTCAACTTGCTTTAGCTTCTTTGTCATCTGTTGAAATTGAAGAAGAGACACAGGACCCTCAAGTCCGTAGGCAGAAAGTCACGGAGAAAATGAGGACCTTGCAGAAGGAAAGGGAAGTAAAGCTCATAACTATTCTGAAAGATCACCTTCAACCATTTGTTGATGGTCGTAATGATGAGTTTGTAAAATGGGCAAATTCAGAAGCACGACGCCTCTCGTCAGCAGCCTTTGGTGAGGCTATGTTGCATACAATTGGTTATATTTACACGAGGCAAGCTGCAAAAGAAATTGGAAAAGACAAACGATACATGAAGGTACCATTTTTAGCAGAATGGGTGCGAGATAAAGGACACCAGATAAAATCACAAGTATCAGCAGCTTCAGGTGCTGTAGCTTTAATTCAACTACAGGAAGATCTGAAGAAGTTGAACCAAGGTGAAAACAAGGAAGAGACCTTAATGAAAGCCATTGAAGAGAGGAAGGATCAAGTGCTTAATTCTCTATGGCAAATTAATGTTGTTGATATTGAGTCAACCTTATCTCGTGTCTGCCAAGCAGTACTTAAGGACCCCACTGTGTCCAGGGATGTTCTGAGGGATCGGGCTAAAGCATTGAAAAAGTTAGGAACAGTCTTCCAAGGTGCAAAAGCTGCTTACAGTAGAGAGAACAGTCTCCGCCATGAAAACGACACCAAAATAGATTCTGCATCATCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

356

Amino Acids

40.17

Weight (kDa)

6.64

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	23 - 84	5.1e-25	DnaJ domain
DnaJ-X	PF14308	151 - 340	1.7e-56	X-domain of DnaJ-containing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT4G39150 AT4G39150 AT4G39150
fragaria_vesca	FvH4_2g09560 FvH4_2g09560 FvH4_2g09560
malus_domestica	MD05G1061900.v1.1 MD10G1069700.v1.1
prunus_persica	Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1
pyrus_communis	pycom05g05330 pycom10g05530
rosa_chinensis	RchiOBHm_Chr6g0265851
rosa_laevigata	RLG00000014153
rosa_multiflora	Rmu_sc0007599.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202300
rosa_rugosa	Rorug06G0020800 Rorug06G0020800 Rorug06G0020800 Rorug06G0020900 Rorug06G0020900 Rorug06G0021000
rosa_samantha	Rh6AG142700 Rh6BG142300 Rh6CG139000 Rh6DG126400
rosa_wichuraiana	Rw6G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	664
AccB1I	GGYRCC	1 cut(s)	664
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccI	GTMKAC	2 cut(s)	93, 291
AciI	CCGC	1 cut(s)	1024
AclWI	GGATC	4 cut(s)	164, 221, 840, 954
AcsI	RAATTY	3 cut(s)	187, 329, 544
AcuI	CTGAAG	2 cut(s)	714, 788
AcyI	GRCGYC	2 cut(s)	96, 559
AfaI	GTAC	3 cut(s)	78, 666, 909
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflII	CTTAAG	1 cut(s)	911
AgsI	TTSAA	8 cut(s)	25, 383, 389, 500, 752, 778, 821, 964
AjnI	CCWGG	3 cut(s)	163, 192, 929
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	7 cut(s)	302, 365, 472, 626, 728, 743, 998
AluI	AGCT	7 cut(s)	302, 365, 472, 626, 728, 743, 998
Alw26I	GTCTC	3 cut(s)	389, 794, 1025
AlwI	GGATC	4 cut(s)	164, 221, 840, 954
AlwNI	CAGNNNCTG	2 cut(s)	199, 737
ApeKI	GCWGC	6 cut(s)	179, 299, 572, 626, 725, 998
ApoI	RAATTY	3 cut(s)	187, 329, 544
AseI	ATTAAT	1 cut(s)	861
Asp718I	GGTACC	1 cut(s)	664
AspS9I	GGNCC	3 cut(s)	403, 444, 916
AsuHPI	GGTGA	5 cut(s)	64, 140, 485, 593, 797
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	3 cut(s)	403, 444, 916
BanI	GGYRCC	1 cut(s)	664
BauI	CACGAG	2 cut(s)	616, 891
BbsI	GAAGAC	1 cut(s)	973
BbvI	GCAGC	6 cut(s)	166, 311, 584, 613, 737, 985
BccI	CCATC	1 cut(s)	506
BcgI	CGANNNNNNTGC	1 cut(s)	1044
BciT130I	CCWGG	3 cut(s)	165, 194, 931
BcoDI	GTCTC	3 cut(s)	389, 794, 1025
BfmI	CTRYAG	4 cut(s)	275, 297, 738, 755
BfrI	CTTAAG	1 cut(s)	911
BglII	AGATCT	1 cut(s)	763
BisI	GCNGC	6 cut(s)	180, 300, 573, 627, 726, 999
BlsI	GCNGC	6 cut(s)	181, 301, 574, 628, 727, 1000
BmcAI	AGTACT	2 cut(s)	78, 909
Bme1390I	CCNGG	3 cut(s)	165, 194, 931
Bme18I	GGWCC	3 cut(s)	403, 444, 916
BmgT120I	GGNCC	3 cut(s)	403, 444, 916
BmiI	GGNNCC	3 cut(s)	405, 666, 918
BmrFI	CCNGG	3 cut(s)	165, 194, 931
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	303, 1064
BmuI	ACTGGG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	973
BpmI	CTGGAG	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	159
BsaHI	GRCGYC	2 cut(s)	96, 559
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	4 cut(s)	285, 781, 930, 985
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	84, 204
Bse3DI	GCAATG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	3 cut(s)	165, 194, 931
BseDI	CCNNGG	4 cut(s)	285, 781, 930, 985
BseGI	GGATG	3 cut(s)	88, 318, 940
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	2 cut(s)	99, 932
BseNI	ACTGG	2 cut(s)	84, 204
BseXI	GCAGC	6 cut(s)	166, 311, 584, 613, 737, 985
BshNI	GGYRCC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	3 cut(s)	389, 794, 1025
Bso31I	GGTCTC	1 cut(s)	794
Bsp119I	TTCGAA	1 cut(s)	336
Bsp143I	GATC	7 cut(s)	37, 169, 226, 490, 763, 832, 946
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	1024
BspCNI	CTCAG	2 cut(s)	100, 933
BspLI	GGNNCC	3 cut(s)	405, 666, 918
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	4 cut(s)	164, 221, 840, 954
BspT104I	TTCGAA	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	664
BspTI	CTTAAG	1 cut(s)	911
BspTNI	GGTCTC	1 cut(s)	794
BsrDI	GCAATG	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	84, 204
BssECI	CCNNGG	4 cut(s)	285, 781, 930, 985
BssMI	GATC	7 cut(s)	37, 169, 226, 490, 763, 832, 946
BssNI	GRCGYC	2 cut(s)	96, 559
BssSI	CACGAG	2 cut(s)	616, 891
BssT1I	CCWWGG	3 cut(s)	285, 781, 985
Bst2BI	CACGAG	2 cut(s)	616, 891
Bst2UI	CCWGG	3 cut(s)	165, 194, 931
Bst4CI	ACNGT	4 cut(s)	925, 979, 1007, 1019
Bst6I	CTCTTC	3 cut(s)	387, 792, 816
BstACI	GRCGYC	2 cut(s)	96, 559
BstAFI	CTTAAG	1 cut(s)	911
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	268, 624
BstDEI	CTNAG	3 cut(s)	41, 108, 941
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	88, 318, 940
BstKTI	GATC	7 cut(s)	40, 172, 229, 493, 766, 835, 949
BstMAI	GTCTC	3 cut(s)	389, 794, 1025
BstMBI	GATC	7 cut(s)	37, 169, 226, 490, 763, 832, 946
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 734, 998
BstNI	CCWGG	3 cut(s)	165, 194, 931
BstSCI	CCNGG	3 cut(s)	163, 192, 929
BstSFI	CTRYAG	4 cut(s)	275, 297, 738, 755
BstV1I	GCAGC	6 cut(s)	166, 311, 584, 613, 737, 985
BstV2I	GAAGAC	1 cut(s)	973
BstX2I	RGATCY	2 cut(s)	169, 763
BstYI	RGATCY	2 cut(s)	169, 763
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	88, 318, 940
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	3 cut(s)	60, 197, 921
Cac8I	GCNNGC	2 cut(s)	268, 624
CaiI	CAGNNNCTG	2 cut(s)	199, 737
Cfr13I	GGNCC	3 cut(s)	403, 444, 916
CseI	GACGC	2 cut(s)	104, 567
Csp6I	GTAC	3 cut(s)	77, 665, 908
CviAII	CATG	4 cut(s)	49, 286, 658, 1028
CviQI	GTAC	3 cut(s)	77, 665, 908
DdeI	CTNAG	3 cut(s)	41, 108, 941
DpnI	GATC	7 cut(s)	39, 171, 228, 492, 765, 834, 948
DpnII	GATC	7 cut(s)	37, 169, 226, 490, 763, 832, 946
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eam1104I	CTCTTC	3 cut(s)	387, 792, 816
EarI	CTCTTC	3 cut(s)	387, 792, 816
EciI	GGCGGA	1 cut(s)	1013
Eco130I	CCWWGG	3 cut(s)	285, 781, 985
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	3 cut(s)	403, 444, 916
Eco57I	CTGAAG	2 cut(s)	714, 788
EcoO109I	RGGNCCY	3 cut(s)	403, 444, 916
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	3 cut(s)	163, 192, 929
EcoT14I	CCWWGG	3 cut(s)	285, 781, 985
ErhI	CCWWGG	3 cut(s)	285, 781, 985
FaeI	CATG	4 cut(s)	52, 289, 661, 1031
FalI	AAGNNNNNCTT	4 cut(s)	480, 512, 894, 926
FatI	CATG	4 cut(s)	48, 285, 657, 1027
FauNDI	CATATG	1 cut(s)	247
FblI	GTMKAC	2 cut(s)	93, 291
Fnu4HI	GCNGC	6 cut(s)	180, 300, 573, 627, 726, 999
FokI	GGATG	3 cut(s)	95, 325, 947
Fsp4HI	GCNGC	6 cut(s)	180, 300, 573, 627, 726, 999
GluI	GCNGC	6 cut(s)	180, 300, 573, 627, 726, 999
GsuI	CTGGAG	1 cut(s)	186
HgaI	GACGC	2 cut(s)	104, 567
Hin1I	GRCGYC	2 cut(s)	96, 559
Hin1II	CATG	4 cut(s)	52, 289, 661, 1031
HincII	GTYRAC	3 cut(s)	94, 353, 882
HindII	GTYRAC	3 cut(s)	94, 353, 882
HinfI	GANTC	3 cut(s)	281, 878, 1049
HphI	GGTGA	5 cut(s)	64, 140, 485, 593, 797
Hpy166II	GTNNAC	5 cut(s)	94, 148, 292, 353, 882
Hpy188I	TCNGA	4 cut(s)	486, 550, 768, 942
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	5 cut(s)	94, 148, 292, 353, 882
Hpy99I	CGWCG	2 cut(s)	98, 561
HpyAV	CCTTC	5 cut(s)	49, 448, 506, 655, 823
HpyCH4III	ACNGT	4 cut(s)	925, 979, 1007, 1019
HpyCH4V	TGCA	7 cut(s)	8, 299, 451, 595, 629, 992, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 734, 998
HpyF3I	CTNAG	3 cut(s)	41, 108, 941
Hsp92I	GRCGYC	2 cut(s)	96, 559
Hsp92II	CATG	4 cut(s)	52, 289, 661, 1031
KpnI	GGTACC	1 cut(s)	668
Kzo9I	GATC	7 cut(s)	37, 169, 226, 490, 763, 832, 946
LmnI	GCTCC	1 cut(s)	324
Lsp1109I	GCAGC	6 cut(s)	166, 311, 584, 613, 737, 985
LweI	GCATC	2 cut(s)	303, 1064
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	7 cut(s)	39, 171, 228, 492, 765, 834, 948
MboI	GATC	7 cut(s)	37, 169, 226, 490, 763, 832, 946
MboII	GAAGA	9 cut(s)	325, 350, 401, 404, 773, 781, 809, 833, 973
MfeI	CAATTG	2 cut(s)	25, 600
MflI	RGATCY	2 cut(s)	169, 763
MlyI	GAGTC	1 cut(s)	887
MnlI	CCTC	9 cut(s)	109, 199, 417, 435, 572, 577, 612, 819, 936
MseI	TTAA	7 cut(s)	114, 221, 746, 806, 843, 861, 912
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	911
MspR9I	CCNGG	3 cut(s)	165, 194, 931
MunI	CAATTG	2 cut(s)	25, 600
MvaI	CCWGG	3 cut(s)	165, 194, 931
MwoI	GCNNNNNNNGC	3 cut(s)	104, 734, 998
NcoI	CCATGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	7 cut(s)	37, 169, 226, 490, 763, 832, 946
NlaIII	CATG	4 cut(s)	52, 289, 661, 1031
NlaIV	GGNNCC	3 cut(s)	405, 666, 918
NmuCI	GTSAC	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	281, 1049
PflMI	CCANNNNNTGG	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	6 cut(s)	181, 301, 574, 628, 727, 1000
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
PpuMI	RGGWCCY	3 cut(s)	403, 444, 916
PshBI	ATTAAT	1 cut(s)	861
Psp5II	RGGWCCY	3 cut(s)	403, 444, 916
Psp6I	CCWGG	3 cut(s)	163, 192, 929
PspGI	CCWGG	3 cut(s)	163, 192, 929
PspN4I	GGNNCC	3 cut(s)	405, 666, 918
PspPI	GGNCC	3 cut(s)	403, 444, 916
PspPPI	RGGWCCY	3 cut(s)	403, 444, 916
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	2 cut(s)	199, 737
PsuI	RGATCY	2 cut(s)	169, 763
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	3 cut(s)	78, 666, 909
RsaNI	GTAC	3 cut(s)	77, 665, 908
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	7 cut(s)	114, 221, 746, 806, 843, 861, 912
SatI	GCNGC	6 cut(s)	180, 300, 573, 627, 726, 999
Sau3AI	GATC	7 cut(s)	37, 169, 226, 490, 763, 832, 946
Sau96I	GGNCC	3 cut(s)	403, 444, 916
ScaI	AGTACT	2 cut(s)	78, 909
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	3 cut(s)	165, 194, 931
SfaNI	GCATC	2 cut(s)	303, 1064
SfcI	CTRYAG	4 cut(s)	275, 297, 738, 755
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	3 cut(s)	403, 444, 916
SmlI	CTYRAG	2 cut(s)	408, 911
SmoI	CTYRAG	2 cut(s)	408, 911
SsiI	CCGC	1 cut(s)	1024
StyD4I	CCNGG	3 cut(s)	163, 192, 929
StyI	CCWWGG	3 cut(s)	285, 781, 985
TaaI	ACNGT	4 cut(s)	925, 979, 1007, 1019
TaqI	TCGA	2 cut(s)	93, 336
TatI	WGTACW	2 cut(s)	76, 907
TfiI	GAWTC	2 cut(s)	281, 1049
Tru1I	TTAA	7 cut(s)	114, 221, 746, 806, 843, 861, 912
Tru9I	TTAA	7 cut(s)	114, 221, 746, 806, 843, 861, 912
TscAI	CASTG	3 cut(s)	67, 204, 928
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	6 cut(s)	179, 299, 572, 626, 725, 998
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	4 cut(s)	87, 674, 824, 1044
TspGWI	ACGGA	3 cut(s)	273, 404, 446
TspRI	CASTG	3 cut(s)	67, 204, 928
Van91I	CCANNNNNTGG	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	911
VpaK11BI	GGWCC	3 cut(s)	403, 444, 916
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	3 cut(s)	187, 329, 544
XmiI	GTMKAC	2 cut(s)	93, 291
ZrmI	AGTACT	2 cut(s)	78, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.