Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003852

Physical Location & Seq

Genomic Coordinates Reverse (-)

6339901 .. 6341515

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05330.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCTTTTTGGAAGCGAATTCTTTGAAGATTATGTAGGTCAACTTGCTTTGGCTTCTTTGTCATCTGTTGAAATTGAAGAAGAGACACAGGACCCTGAAGTCCGTAGGCAGAAAGTCACGGAGAAAATGAGGGCCTTGCAGAAGGAAAGGGAAGTAAAGCTCATAACTATTCTGAAAGATCGCCTTCAACCATTTGTTGATGGTTGTACAGATGATTTTGTAAAATGGGCAAATTCAGAAGCACGACGCCTCTCATCAGCTGCCTTCGGTGAGGCTATGCTGCATACGATTGGTTATATTTACACGAGGAAAGCTGCAAGAGAAATGGGAAAGGACAAACGATACATGAAGGTACCATTTTTAGCAGAATGGGTGCGAGATAAAGGACATCAGATAAAGTCACAGGTAGCAGCAGCTTCAGGTGCTGTAGCCTTAATTCAACTACAGGAAGATCTAAAGAAGTTGAACCAAGTTGAAAACAAGGAAGAGACCTTAATAAAAGCCATTGAAGATAAGAAGGATCTAGTGCTTAATTCCCTATGGCAGATTAACGTCGTTGATATTGAGTCAACCTTGTCACATGTCTGCCAAGCAGTACTTAAAGACCCCACTGTGTCCAGGGATGTTTTGAGGGTTCGGGCTCAAGCATTGAAAAAGTTAGGAACAATCTTCCAAGGTGCAAAAGCTGCTTACAGTAGAGAGAACAGTCTCCGCCATGAAAATGACACCAAAATAGATTCTGCTTCATCACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

252

Amino Acids

28.43

Weight (kDa)

7.72

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT4G39150 AT4G39150 AT4G39150
fragaria_vesca	FvH4_2g09560 FvH4_2g09560 FvH4_2g09560
malus_domestica	MD05G1061900.v1.1 MD10G1069700.v1.1
prunus_persica	Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1
pyrus_communis	pycom05g05330 pycom10g05530
rosa_chinensis	RchiOBHm_Chr6g0265851
rosa_laevigata	RLG00000014153
rosa_multiflora	Rmu_sc0007599.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202300
rosa_rugosa	Rorug06G0020800 Rorug06G0020800 Rorug06G0020800 Rorug06G0020900 Rorug06G0020900 Rorug06G0021000
rosa_samantha	Rh6AG142700 Rh6BG142300 Rh6CG139000 Rh6DG126400
rosa_wichuraiana	Rw6G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	1 cut(s)	712
AclWI	GGATC	1 cut(s)	528
AcsI	RAATTY	2 cut(s)	17, 232
AcuI	CTGAAG	2 cut(s)	117, 402
AcyI	GRCGYC	1 cut(s)	247
AfaI	GTAC	3 cut(s)	208, 354, 597
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	9 cut(s)	26, 71, 77, 188, 440, 466, 476, 509, 652
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	5 cut(s)	160, 260, 314, 416, 686
AluI	AGCT	5 cut(s)	160, 260, 314, 416, 686
Alw26I	GTCTC	3 cut(s)	77, 482, 713
AlwI	GGATC	1 cut(s)	528
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	6 cut(s)	260, 280, 314, 410, 413, 686
ApoI	RAATTY	2 cut(s)	17, 232
Asp718I	GGTACC	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	91, 132
AsuHPI	GGTGA	2 cut(s)	281, 741
AvaII	GGWCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	643
BauI	CACGAG	1 cut(s)	304
BbvI	GCAGC	6 cut(s)	247, 267, 301, 422, 425, 673
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	619
BcoDI	GTCTC	3 cut(s)	77, 482, 713
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	2 cut(s)	426, 443
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	6 cut(s)	261, 281, 315, 411, 414, 687
BlsI	GCNGC	6 cut(s)	262, 282, 316, 412, 415, 688
BmcAI	AGTACT	1 cut(s)	597
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	91, 132
BmiI	GGNNCC	2 cut(s)	93, 354
BmrFI	CCNGG	1 cut(s)	619
BpuEI	CTTGAG	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	618, 673
BseBI	CCWGG	1 cut(s)	619
BseDI	CCNNGG	2 cut(s)	618, 673
BseGI	GGATG	1 cut(s)	628
BseXI	GCAGC	6 cut(s)	247, 267, 301, 422, 425, 673
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	352
BsmAI	GTCTC	3 cut(s)	77, 482, 713
BsnI	GGCC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp1407I	TGTACA	1 cut(s)	206
Bsp143I	GATC	3 cut(s)	178, 451, 520
BspACI	CCGC	1 cut(s)	712
BspANI	GGCC	1 cut(s)	134
BspLI	GGNNCC	2 cut(s)	93, 354
BspPI	GGATC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	482
BsrGI	TGTACA	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	618, 673
BssMI	GATC	3 cut(s)	178, 451, 520
BssNI	GRCGYC	1 cut(s)	247
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	673
Bst2BI	CACGAG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	4 cut(s)	613, 695, 707, 753
Bst6I	CTCTTC	2 cut(s)	75, 480
BstACI	GRCGYC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	3 cut(s)	181, 454, 523
BstMAI	GTCTC	3 cut(s)	77, 482, 713
BstMBI	GATC	3 cut(s)	178, 451, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 686
BstNI	CCWGG	1 cut(s)	619
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	2 cut(s)	426, 443
BstV1I	GCAGC	6 cut(s)	247, 267, 301, 422, 425, 673
BstX2I	RGATCY	2 cut(s)	451, 520
BstYI	RGATCY	2 cut(s)	451, 520
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	1 cut(s)	609
CaiI	CAGNNNCTG	1 cut(s)	425
Cfr13I	GGNCC	2 cut(s)	91, 132
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	3 cut(s)	207, 353, 596
CviAII	CATG	3 cut(s)	346, 581, 716
CviQI	GTAC	3 cut(s)	207, 353, 596
DpnI	GATC	3 cut(s)	180, 453, 522
DpnII	GATC	3 cut(s)	178, 451, 520
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
Eam1104I	CTCTTC	2 cut(s)	75, 480
EarI	CTCTTC	2 cut(s)	75, 480
EciI	GGCGGA	1 cut(s)	701
Eco130I	CCWWGG	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	643
Eco31I	GGTCTC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	117, 402
EcoO109I	RGGNCCY	2 cut(s)	91, 132
EcoRI	GAATTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	673
EcoT38I	GRGCYC	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	3 cut(s)	349, 584, 719
FaiI	YATR	9 cut(s)	33, 164, 278, 285, 297, 347, 541, 582, 717
FalI	AAGNNNNNCTT	4 cut(s)	168, 200, 582, 614
FatI	CATG	3 cut(s)	345, 580, 715
Fnu4HI	GCNGC	6 cut(s)	261, 281, 315, 411, 414, 687
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	1 cut(s)	643
Fsp4HI	GCNGC	6 cut(s)	261, 281, 315, 411, 414, 687
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	6 cut(s)	261, 281, 315, 411, 414, 687
HaeIII	GGCC	1 cut(s)	134
HgaI	GACGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	3 cut(s)	349, 584, 719
HincII	GTYRAC	2 cut(s)	41, 570
HindII	GTYRAC	2 cut(s)	41, 570
HinfI	GANTC	2 cut(s)	566, 737
HphI	GGTGA	2 cut(s)	281, 741
Hpy166II	GTNNAC	2 cut(s)	41, 570
Hpy188I	TCNGA	3 cut(s)	174, 238, 393
Hpy8I	GTNNAC	2 cut(s)	41, 570
Hpy99I	CGWCG	2 cut(s)	249, 557
HpyAV	CCTTC	5 cut(s)	136, 194, 274, 343, 511
HpyCH4III	ACNGT	4 cut(s)	613, 695, 707, 753
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	4 cut(s)	139, 283, 317, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 686
HpySE526I	ACGT	1 cut(s)	552
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	349, 584, 719
KpnI	GGTACC	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	178, 451, 520
LpnPI	CCDG	7 cut(s)	74, 108, 389, 405, 431, 604, 631
Lsp1109I	GCAGC	6 cut(s)	247, 267, 301, 422, 425, 673
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	3 cut(s)	115, 399, 576
MalI	GATC	3 cut(s)	180, 453, 522
MboI	GATC	3 cut(s)	178, 451, 520
MboII	GAAGA	7 cut(s)	38, 89, 92, 461, 497, 521, 661
MflI	RGATCY	2 cut(s)	451, 520
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	5 cut(s)	17, 72, 232, 435, 532
MlyI	GAGTC	1 cut(s)	575
MnlI	CCTC	5 cut(s)	123, 260, 265, 300, 624
MseI	TTAA	5 cut(s)	434, 494, 531, 549, 600
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	619
MvaI	CCWGG	1 cut(s)	619
MwoI	GCNNNNNNNGC	2 cut(s)	422, 686
NdeII	GATC	3 cut(s)	178, 451, 520
NlaIII	CATG	3 cut(s)	349, 584, 719
NlaIV	GGNNCC	2 cut(s)	93, 354
NmuCI	GTSAC	3 cut(s)	115, 399, 576
NspI	RCATGY	1 cut(s)	584
PciI	ACATGT	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	737
PkrI	GCNGC	6 cut(s)	262, 282, 316, 412, 415, 688
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PpuMI	RGGWCCY	1 cut(s)	91
PscI	ACATGT	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	2 cut(s)	93, 354
PspPI	GGNCC	2 cut(s)	91, 132
PspPPI	RGGWCCY	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	2 cut(s)	451, 520
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	3 cut(s)	208, 354, 597
RsaNI	GTAC	3 cut(s)	207, 353, 596
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	5 cut(s)	434, 494, 531, 549, 600
SatI	GCNGC	6 cut(s)	261, 281, 315, 411, 414, 687
Sau3AI	GATC	3 cut(s)	178, 451, 520
Sau96I	GGNCC	2 cut(s)	91, 132
ScaI	AGTACT	1 cut(s)	597
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	1 cut(s)	643
SfcI	CTRYAG	2 cut(s)	426, 443
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	1 cut(s)	642
SmoI	CTYRAG	1 cut(s)	642
Sse9I	AATT	5 cut(s)	17, 72, 232, 435, 532
SsiI	CCGC	1 cut(s)	712
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	4 cut(s)	613, 695, 707, 753
TaiI	ACGT	1 cut(s)	555
TasI	AATT	5 cut(s)	17, 72, 232, 435, 532
TatI	WGTACW	2 cut(s)	206, 595
TfiI	GAWTC	1 cut(s)	737
Tru1I	TTAA	5 cut(s)	434, 494, 531, 549, 600
Tru9I	TTAA	5 cut(s)	434, 494, 531, 549, 600
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	3 cut(s)	115, 399, 576
TseI	GCWGC	6 cut(s)	260, 280, 314, 410, 413, 686
Tsp45I	GTSAC	3 cut(s)	115, 399, 576
TspDTI	ATGAA	3 cut(s)	362, 732, 735
TspGWI	ACGGA	2 cut(s)	92, 134
TspRI	CASTG	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	2 cut(s)	17, 232
XceI	RCATGY	1 cut(s)	584
XspI	CTAG	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.