Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003852

Physical Location & Seq

Genomic Coordinates Reverse (-)

10906675 .. 10911006

Gene Structure 4332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1061900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAAGTATTGGGCAAGGCGTGTTCACCCTGATAAAAATCCTGGAGATCCGAAGGCTGCCGACAATTTCCAGGCACTTGGCGAGGCTTATCAGGTTCTAAGTGATCCAGAGAAGCGTGAAGCATATGACAAGCATGGAAAGGCAGGCATACAACAGGATTCCATGGTAGACCCTGCAGCTGTGTTTGGAATGCTTTTTGGAAGCGAATTCTTTGAAGATTATGTAGGTCAACTTGCTTTGGCTTCTTTGTCATCTGTTGAAATTGAAGAAGAGACACAGGACCCTGAAGTCCGTAGGCAGAAAGTCACGGAGAAAATGAGGGCCTTGCAGAAGGAAAGGGAAGTAAAGCTCATAACTATTCTGAAAGATCGCCTTCAACCATTTGTTGATGGTTGTACAGATGATTTTGTAAAATGGGCAAATTCAGAAGCACGACGCCTCTCATCAGCTGCCTTCGGTGAGGCTATGCTGCATACGATTGGTTATATTTACACGAGGAAAGCTGCAAGAGAAATTGGAAAGGACAAACGATACATGAAGGTACCATTTTTAGCAGAATGGGTGCGAGATAAAGGACATCAGATAAAGTCACAGGTAGCAGCAGCTTCAGGTGCTGTAGCTTTAATTCAACTACAGGAAGATCTAAAGAAGTTGAACCAAGTTGAAAACAAGGAAGAGACCTTGATGAAAGCCATTGAAGATAAGAAGGATCTAGTGCTTAATTCCCTATGGCAGATTAACGTTGTTGATATTGAGTCAACCTTGTCACATGTCTGCCAAGCAGTACTTAAAGACCCCACTGTGTCCAGGGATGTTCTGAGGCTTCGGGCTCAAGCATTGAAAAAGTTAGGAACAATCTTCCAAGGTGCAAAAGCTGCTTACAGTAGAGAGAACAGTCTCCGCCATGAAAATGACACCAAAATAGATTCTGCTTCATCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

315

Amino Acids

35.43

Weight (kDa)

7.03

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	5 - 43	3.2e-14	DnaJ domain
DnaJ-X	PF14308	110 - 299	6.1e-57	X-domain of DnaJ-containing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT4G39150 AT4G39150 AT4G39150
fragaria_vesca	FvH4_2g09560 FvH4_2g09560 FvH4_2g09560
malus_domestica	MD05G1061900.v1.1 MD10G1069700.v1.1
prunus_persica	Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1
pyrus_communis	pycom05g05330 pycom10g05530
rosa_chinensis	RchiOBHm_Chr6g0265851
rosa_laevigata	RLG00000014153
rosa_multiflora	Rmu_sc0007599.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202300
rosa_rugosa	Rorug06G0020800 Rorug06G0020800 Rorug06G0020800 Rorug06G0020900 Rorug06G0020900 Rorug06G0021000
rosa_samantha	Rh6AG142700 Rh6BG142300 Rh6CG139000 Rh6DG126400
rosa_wichuraiana	Rw6G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
Acc65I	GGTACC	1 cut(s)	541
AccB1I	GGYRCC	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	1 cut(s)	901
AclI	AACGTT	1 cut(s)	741
AclWI	GGATC	3 cut(s)	41, 98, 717
AcsI	RAATTY	2 cut(s)	206, 421
AcuI	CTGAAG	2 cut(s)	306, 591
AcyI	GRCGYC	1 cut(s)	436
AfaI	GTAC	3 cut(s)	397, 543, 786
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	9 cut(s)	215, 260, 266, 377, 629, 655, 665, 698, 841
AjnI	CCWGG	3 cut(s)	40, 69, 806
AluBI	AGCT	7 cut(s)	179, 349, 449, 503, 605, 620, 875
AluI	AGCT	7 cut(s)	179, 349, 449, 503, 605, 620, 875
Alw26I	GTCTC	3 cut(s)	266, 671, 902
AlwI	GGATC	3 cut(s)	41, 98, 717
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	8 cut(s)	56, 176, 449, 469, 503, 599, 602, 875
ApoI	RAATTY	2 cut(s)	206, 421
Asp718I	GGTACC	1 cut(s)	541
AspS9I	GGNCC	2 cut(s)	280, 321
AsuHPI	GGTGA	2 cut(s)	17, 470
AvaII	GGWCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	832
BauI	CACGAG	1 cut(s)	493
BbvI	GCAGC	8 cut(s)	43, 188, 436, 456, 490, 611, 614, 862
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	3 cut(s)	42, 71, 808
BcoDI	GTCTC	3 cut(s)	266, 671, 902
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	3 cut(s)	174, 615, 632
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	8 cut(s)	57, 177, 450, 470, 504, 600, 603, 876
BlsI	GCNGC	8 cut(s)	58, 178, 451, 471, 505, 601, 604, 877
BmcAI	AGTACT	1 cut(s)	786
Bme1390I	CCNGG	3 cut(s)	42, 71, 808
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	280, 321
BmiI	GGNNCC	2 cut(s)	282, 543
BmrFI	CCNGG	3 cut(s)	42, 71, 808
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	816
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	436
BsaI	GGTCTC	1 cut(s)	671
BsaJI	CCNNGG	3 cut(s)	162, 807, 862
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	3 cut(s)	42, 71, 808
BseDI	CCNNGG	3 cut(s)	162, 807, 862
BseGI	GGATG	1 cut(s)	817
BseJI	GATNNNNATC	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	809
BseXI	GCAGC	8 cut(s)	43, 188, 436, 456, 490, 611, 614, 862
BshFI	GGCC	1 cut(s)	323
BshNI	GGYRCC	1 cut(s)	541
BsmAI	GTCTC	3 cut(s)	266, 671, 902
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	671
Bsp1286I	GDGCHC	1 cut(s)	832
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	5 cut(s)	46, 103, 367, 640, 709
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	1 cut(s)	901
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	810
BspLI	GGNNCC	2 cut(s)	282, 543
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	3 cut(s)	41, 98, 717
BspT107I	GGYRCC	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	671
BsrGI	TGTACA	1 cut(s)	395
BssECI	CCNNGG	3 cut(s)	162, 807, 862
BssMI	GATC	5 cut(s)	46, 103, 367, 640, 709
BssNI	GRCGYC	1 cut(s)	436
BssSI	CACGAG	1 cut(s)	493
BssT1I	CCWWGG	2 cut(s)	162, 862
Bst2BI	CACGAG	1 cut(s)	493
Bst2UI	CCWGG	3 cut(s)	42, 71, 808
Bst4CI	ACNGT	3 cut(s)	802, 884, 896
Bst6I	CTCTTC	2 cut(s)	264, 669
BstACI	GRCGYC	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstAUI	TGTACA	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	98, 818
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	817
BstKTI	GATC	5 cut(s)	49, 106, 370, 643, 712
BstMAI	GTCTC	3 cut(s)	266, 671, 902
BstMBI	GATC	5 cut(s)	46, 103, 367, 640, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	611, 875
BstNI	CCWGG	3 cut(s)	42, 71, 808
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	3 cut(s)	40, 69, 806
BstSFI	CTRYAG	3 cut(s)	174, 615, 632
BstV1I	GCAGC	8 cut(s)	43, 188, 436, 456, 490, 611, 614, 862
BstX2I	RGATCY	3 cut(s)	46, 640, 709
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	3 cut(s)	46, 640, 709
BsuRI	GGCC	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	817
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	280, 321
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	396, 542, 785
CviAII	CATG	5 cut(s)	134, 163, 535, 770, 905
CviQI	GTAC	3 cut(s)	396, 542, 785
DdeI	CTNAG	2 cut(s)	98, 818
DpnI	GATC	5 cut(s)	48, 105, 369, 642, 711
DpnII	GATC	5 cut(s)	46, 103, 367, 640, 709
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eam1104I	CTCTTC	2 cut(s)	264, 669
EarI	CTCTTC	2 cut(s)	264, 669
EciI	GGCGGA	1 cut(s)	890
Eco130I	CCWWGG	2 cut(s)	162, 862
Eco24I	GRGCYC	1 cut(s)	832
Eco31I	GGTCTC	1 cut(s)	671
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	306, 591
EcoO109I	RGGNCCY	2 cut(s)	280, 321
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	40, 69, 806
EcoT14I	CCWWGG	2 cut(s)	162, 862
EcoT38I	GRGCYC	1 cut(s)	832
ErhI	CCWWGG	2 cut(s)	162, 862
FaeI	CATG	5 cut(s)	137, 166, 538, 773, 908
FalI	AAGNNNNNCTT	4 cut(s)	357, 389, 771, 803
FatI	CATG	5 cut(s)	133, 162, 534, 769, 904
FauNDI	CATATG	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	8 cut(s)	57, 177, 450, 470, 504, 600, 603, 876
FokI	GGATG	1 cut(s)	824
FriOI	GRGCYC	1 cut(s)	832
Fsp4HI	GCNGC	8 cut(s)	57, 177, 450, 470, 504, 600, 603, 876
FspBI	CTAG	1 cut(s)	713
GluI	GCNGC	8 cut(s)	57, 177, 450, 470, 504, 600, 603, 876
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	323
HgaI	GACGC	1 cut(s)	444
Hin1I	GRCGYC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	137, 166, 538, 773, 908
HincII	GTYRAC	2 cut(s)	230, 759
HindII	GTYRAC	2 cut(s)	230, 759
HinfI	GANTC	3 cut(s)	158, 755, 926
HphI	GGTGA	2 cut(s)	17, 470
Hpy166II	GTNNAC	4 cut(s)	25, 169, 230, 759
Hpy188I	TCNGA	5 cut(s)	51, 363, 427, 582, 819
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	4 cut(s)	25, 169, 230, 759
Hpy99I	CGWCG	1 cut(s)	438
HpyAV	CCTTC	6 cut(s)	46, 325, 383, 463, 532, 700
HpyCH4III	ACNGT	3 cut(s)	802, 884, 896
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	5 cut(s)	176, 328, 472, 506, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	611, 875
HpyF3I	CTNAG	2 cut(s)	98, 818
HpySE526I	ACGT	1 cut(s)	741
Hsp92I	GRCGYC	1 cut(s)	436
Hsp92II	CATG	5 cut(s)	137, 166, 538, 773, 908
KpnI	GGTACC	1 cut(s)	545
Kzo9I	GATC	5 cut(s)	46, 103, 367, 640, 709
Lsp1109I	GCAGC	8 cut(s)	43, 188, 436, 456, 490, 611, 614, 862
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	3 cut(s)	304, 588, 765
MalI	GATC	5 cut(s)	48, 105, 369, 642, 711
MboI	GATC	5 cut(s)	46, 103, 367, 640, 709
MboII	GAAGA	7 cut(s)	227, 278, 281, 650, 686, 710, 850
MflI	RGATCY	3 cut(s)	46, 640, 709
MhlI	GDGCHC	1 cut(s)	832
MluCI	AATT	7 cut(s)	64, 206, 261, 421, 513, 624, 721
MlyI	GAGTC	1 cut(s)	764
MnlI	CCTC	6 cut(s)	76, 312, 449, 454, 489, 813
MseI	TTAA	4 cut(s)	623, 720, 738, 789
MslI	CAYNNNNRTG	1 cut(s)	909
MspA1I	CMGCKG	2 cut(s)	179, 449
MspR9I	CCNGG	3 cut(s)	42, 71, 808
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	3 cut(s)	42, 71, 808
MwoI	GCNNNNNNNGC	2 cut(s)	611, 875
NcoI	CCATGG	1 cut(s)	162
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	5 cut(s)	46, 103, 367, 640, 709
NlaIII	CATG	5 cut(s)	137, 166, 538, 773, 908
NlaIV	GGNNCC	2 cut(s)	282, 543
NmuCI	GTSAC	3 cut(s)	304, 588, 765
NspI	RCATGY	1 cut(s)	773
PciI	ACATGT	1 cut(s)	769
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	158, 926
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	8 cut(s)	58, 178, 451, 471, 505, 601, 604, 877
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PpuMI	RGGWCCY	1 cut(s)	280
PscI	ACATGT	1 cut(s)	769
Psp1406I	AACGTT	1 cut(s)	741
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	3 cut(s)	40, 69, 806
PspGI	CCWGG	3 cut(s)	40, 69, 806
PspN4I	GGNNCC	2 cut(s)	282, 543
PspPI	GGNCC	2 cut(s)	280, 321
PspPPI	RGGWCCY	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	3 cut(s)	46, 640, 709
PvuII	CAGCTG	2 cut(s)	179, 449
RsaI	GTAC	3 cut(s)	397, 543, 786
RsaNI	GTAC	3 cut(s)	396, 542, 785
RseI	CAYNNNNRTG	1 cut(s)	909
SaqAI	TTAA	4 cut(s)	623, 720, 738, 789
SatI	GCNGC	8 cut(s)	57, 177, 450, 470, 504, 600, 603, 876
Sau3AI	GATC	5 cut(s)	46, 103, 367, 640, 709
Sau96I	GGNCC	2 cut(s)	280, 321
ScaI	AGTACT	1 cut(s)	786
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	3 cut(s)	42, 71, 808
SduI	GDGCHC	1 cut(s)	832
SfcI	CTRYAG	3 cut(s)	174, 615, 632
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	909
SmlI	CTYRAG	1 cut(s)	831
SmoI	CTYRAG	1 cut(s)	831
Sse9I	AATT	7 cut(s)	64, 206, 261, 421, 513, 624, 721
SsiI	CCGC	1 cut(s)	901
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	3 cut(s)	40, 69, 806
StyI	CCWWGG	2 cut(s)	162, 862
TaaI	ACNGT	3 cut(s)	802, 884, 896
TaiI	ACGT	1 cut(s)	744
TasI	AATT	7 cut(s)	64, 206, 261, 421, 513, 624, 721
TatI	WGTACW	2 cut(s)	395, 784
TfiI	GAWTC	2 cut(s)	158, 926
Tru1I	TTAA	4 cut(s)	623, 720, 738, 789
Tru9I	TTAA	4 cut(s)	623, 720, 738, 789
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	3 cut(s)	304, 588, 765
TseI	GCWGC	8 cut(s)	56, 176, 449, 469, 503, 599, 602, 875
Tsp45I	GTSAC	3 cut(s)	304, 588, 765
TspDTI	ATGAA	5 cut(s)	17, 551, 701, 921, 924
TspGWI	ACGGA	2 cut(s)	281, 323
TspRI	CASTG	1 cut(s)	805
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	2 cut(s)	206, 421
XceI	RCATGY	1 cut(s)	773
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	1 cut(s)	713
ZrmI	AGTACT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.