Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003852

Physical Location & Seq

Genomic Coordinates Reverse (-)

12407100 .. 12413091

Gene Structure 5992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G091300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGTGAAGGACACTACCTACTATGATGTATTGGGTGTCAATGTTGAGGCCTCCTATGCTGAGATTAAAAAGGCTTACTATGTGAAGGCAAGGATTGTTCACCCAGATAAAAATCCTGGAGACCCAAAGGCTGCCGAAAATTTCCAAGCCCAAGATGCGTCATTGAAAAAGCAAAAGCCAAGACTTAGAGAAGCACTTGGCGAGGCTTATCAGGTTTTAAGTGATCCAGATAAGCGTGAAGCATATGACAAGCATGGAAAGGCAGGCATACAACAGGACTCCATGGTAGACCCTGCAGCTGTGTTTGGGATGCTTTTTGGGAGTGAATATTTTGAAGATTATGTTGGTCAACTTGCTTTGGCTTCTTTGTCATCTGTTGAAATTGAGGAAGAGACTCAGGATCCTGAAGTCCATAGGCAGAGAGTCCAAGAAAAAATGAGGGCCTTGCAGAAGGAAAGGGAAGTAAAGCTCATAACTATTCTGAAAGATCGCCTTCAACCATTTGTTGATGGCCGTACAGATGAGTTTGTAAAATGGGCAAATTCAGAAGCAAGGCGCCTCTCAACAGCTGCTTTTGGCGAGGCTATGCTGCATACGATTGGTTATATTTACACGAGAAAAGCTGCAAGAGAAATTGGAAAAGACAAACGATACATGAAGGTACCATTTTTAGCAGAATGGGTGCGAGATAAAGGACACCAGATAAAGTCACAAGTATCAGCAGCTTCAGGTGCTGTAGCATTAATTCAACTACAGGAAGATCTAAAGAAGTTAAATCAAGGTGAAAACAAGGAAGAGACCTTAATGAAAGCCATTGAAGATAAGAAGGATCAAGTGCTTAATTCCTTATGGCAGATTAATGTGGTTGATATTGAGTCAACCCTGTCACGTGTCTGCCAAGCTGTACTTAAAGACCCCACTGTGTCCAGGGATGTTCTGAGGGGGCGGGCTAAAGCACTGAAAAAGTTAGGAACAGTCTTCCAAGGTGCAAAGGCTGCTTATAGTAGAGAGAACAGTCTCCGCCATGAAAATGACCCCAAGATAGATTCTGCGTCATCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

355

Amino Acids

39.94

Weight (kDa)

8.58

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT4G39150 AT4G39150 AT4G39150
fragaria_vesca	FvH4_2g09560 FvH4_2g09560 FvH4_2g09560
malus_domestica	MD05G1061900.v1.1 MD10G1069700.v1.1
prunus_persica	Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1
pyrus_communis	pycom05g05330 pycom10g05530
rosa_chinensis	RchiOBHm_Chr6g0265851
rosa_laevigata	RLG00000014153
rosa_multiflora	Rmu_sc0007599.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202300
rosa_rugosa	Rorug06G0020800 Rorug06G0020800 Rorug06G0020800 Rorug06G0020900 Rorug06G0020900 Rorug06G0021000
rosa_samantha	Rh6AG142700 Rh6BG142300 Rh6CG139000 Rh6DG126400
rosa_wichuraiana	Rw6G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	661
AccB1I	GGYRCC	2 cut(s)	555, 661
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	2 cut(s)	946, 1021
AclWI	GGATC	4 cut(s)	218, 395, 408, 837
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	2 cut(s)	139, 541
AcuI	CTGAAG	2 cut(s)	426, 711
AcvI	CACGTG	1 cut(s)	890
AcyI	GRCGYC	1 cut(s)	556
AfaI	GTAC	3 cut(s)	517, 663, 906
AflIII	ACRYGT	1 cut(s)	889
AgsI	TTSAA	6 cut(s)	166, 335, 380, 497, 749, 818
AjnI	CCWGG	2 cut(s)	115, 926
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	6 cut(s)	299, 469, 569, 623, 725, 902
AluI	AGCT	6 cut(s)	299, 469, 569, 623, 725, 902
Alw26I	GTCTC	4 cut(s)	114, 386, 791, 1022
AlwI	GGATC	4 cut(s)	218, 395, 408, 837
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	3 cut(s)	48, 441, 511
ApeKI	GCWGC	7 cut(s)	131, 296, 569, 589, 623, 722, 995
ApoI	RAATTY	2 cut(s)	139, 541
AseI	ATTAAT	2 cut(s)	743, 858
Asp718I	GGTACC	1 cut(s)	661
AspLEI	GCGC	1 cut(s)	558
AspS9I	GGNCC	1 cut(s)	441
AsuHPI	GGTGA	3 cut(s)	16, 92, 794
BamHI	GGATCC	1 cut(s)	400
BanI	GGYRCC	2 cut(s)	555, 661
BauI	CACGAG	1 cut(s)	613
BbrPI	CACGTG	1 cut(s)	890
BbsI	GAAGAC	1 cut(s)	970
BbvI	GCAGC	7 cut(s)	118, 308, 556, 576, 610, 734, 982
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	2 cut(s)	117, 928
BcoDI	GTCTC	4 cut(s)	114, 386, 791, 1022
BfmI	CTRYAG	3 cut(s)	294, 735, 752
BfoI	RGCGCY	1 cut(s)	559
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	7 cut(s)	132, 297, 570, 590, 624, 723, 996
BlsI	GCNGC	7 cut(s)	133, 298, 571, 591, 625, 724, 997
Bme1390I	CCNGG	2 cut(s)	117, 928
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	3 cut(s)	402, 557, 663
BmrFI	CCNGG	2 cut(s)	117, 928
BmsI	GCATC	2 cut(s)	145, 300
BpiI	GAAGAC	1 cut(s)	970
BpmI	CTGGAG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	890
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	556
BsaI	GGTCTC	2 cut(s)	114, 791
BsaJI	CCNNGG	3 cut(s)	282, 927, 982
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	117, 928
BseDI	CCNNGG	3 cut(s)	282, 927, 982
BseGI	GGATG	2 cut(s)	315, 937
BseJI	GATNNNNATC	1 cut(s)	111
BseMII	CTCAG	3 cut(s)	51, 410, 929
BseXI	GCAGC	7 cut(s)	118, 308, 556, 576, 610, 734, 982
BshFI	GGCC	3 cut(s)	50, 443, 513
BshNI	GGYRCC	2 cut(s)	555, 661
BsmAI	GTCTC	4 cut(s)	114, 386, 791, 1022
BsnI	GGCC	3 cut(s)	50, 443, 513
Bso31I	GGTCTC	2 cut(s)	114, 791
Bsp143I	GATC	5 cut(s)	223, 400, 487, 760, 829
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	2 cut(s)	946, 1021
BspANI	GGCC	3 cut(s)	50, 443, 513
BspCNI	CTCAG	3 cut(s)	52, 409, 930
BspLI	GGNNCC	3 cut(s)	402, 557, 663
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	4 cut(s)	218, 395, 408, 837
BspT107I	GGYRCC	2 cut(s)	555, 661
BspTNI	GGTCTC	2 cut(s)	114, 791
BssECI	CCNNGG	3 cut(s)	282, 927, 982
BssMI	GATC	5 cut(s)	223, 400, 487, 760, 829
BssNI	GRCGYC	1 cut(s)	556
BssSI	CACGAG	1 cut(s)	613
BssT1I	CCWWGG	2 cut(s)	282, 982
Bst2BI	CACGAG	1 cut(s)	613
Bst2UI	CCWGG	2 cut(s)	117, 928
Bst4CI	ACNGT	3 cut(s)	922, 976, 1016
Bst6I	CTCTTC	2 cut(s)	384, 789
BstACI	GRCGYC	1 cut(s)	556
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstBAI	YACGTR	1 cut(s)	890
BstC8I	GCNNGC	2 cut(s)	265, 948
BstDEI	CTNAG	4 cut(s)	60, 185, 396, 938
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	315, 937
BstH2I	RGCGCY	1 cut(s)	559
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	5 cut(s)	226, 403, 490, 763, 832
BstMAI	GTCTC	4 cut(s)	114, 386, 791, 1022
BstMBI	GATC	5 cut(s)	223, 400, 487, 760, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 155, 731, 995
BstNI	CCWGG	2 cut(s)	117, 928
BstSCI	CCNGG	2 cut(s)	115, 926
BstSFI	CTRYAG	3 cut(s)	294, 735, 752
BstV1I	GCAGC	7 cut(s)	118, 308, 556, 576, 610, 734, 982
BstV2I	GAAGAC	1 cut(s)	970
BstX2I	RGATCY	2 cut(s)	400, 760
BstYI	RGATCY	2 cut(s)	400, 760
BsuRI	GGCC	3 cut(s)	50, 443, 513
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	315, 937
BtsIMutI	CAGTG	2 cut(s)	918, 956
Cac8I	GCNNGC	2 cut(s)	265, 948
CaiI	CAGNNNCTG	1 cut(s)	734
CfoI	GCGC	1 cut(s)	558
Cfr13I	GGNCC	1 cut(s)	441
CseI	GACGC	2 cut(s)	147, 1041
Csp6I	GTAC	3 cut(s)	516, 662, 905
CviAII	CATG	4 cut(s)	254, 283, 655, 1025
CviQI	GTAC	3 cut(s)	516, 662, 905
DdeI	CTNAG	4 cut(s)	60, 185, 396, 938
DinI	GGCGCC	1 cut(s)	557
DpnI	GATC	5 cut(s)	225, 402, 489, 762, 831
DpnII	GATC	5 cut(s)	223, 400, 487, 760, 829
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	384, 789
EarI	CTCTTC	2 cut(s)	384, 789
EciI	GGCGGA	1 cut(s)	1010
Eco130I	CCWWGG	2 cut(s)	282, 982
Eco147I	AGGCCT	1 cut(s)	50
Eco31I	GGTCTC	2 cut(s)	114, 791
Eco57I	CTGAAG	2 cut(s)	426, 711
Eco72I	CACGTG	1 cut(s)	890
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	115, 926
EcoT14I	CCWWGG	2 cut(s)	282, 982
EgeI	GGCGCC	1 cut(s)	557
EheI	GGCGCC	1 cut(s)	557
ErhI	CCWWGG	2 cut(s)	282, 982
FaeI	CATG	4 cut(s)	257, 286, 658, 1028
FalI	AAGNNNNNCTT	4 cut(s)	477, 509, 891, 923
FatI	CATG	4 cut(s)	253, 282, 654, 1024
FauI	CCCGC	1 cut(s)	939
FauNDI	CATATG	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	7 cut(s)	132, 297, 570, 590, 624, 723, 996
FokI	GGATG	2 cut(s)	322, 944
Fsp4HI	GCNGC	7 cut(s)	132, 297, 570, 590, 624, 723, 996
GlaI	GCGC	1 cut(s)	557
GluI	GCNGC	7 cut(s)	132, 297, 570, 590, 624, 723, 996
GsuI	CTGGAG	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	559
HaeIII	GGCC	3 cut(s)	50, 443, 513
HgaI	GACGC	2 cut(s)	147, 1041
HhaI	GCGC	1 cut(s)	558
Hin1I	GRCGYC	1 cut(s)	556
Hin1II	CATG	4 cut(s)	257, 286, 658, 1028
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HincII	GTYRAC	2 cut(s)	350, 879
HindII	GTYRAC	2 cut(s)	350, 879
HinfI	GANTC	5 cut(s)	278, 394, 423, 875, 1046
HphI	GGTGA	3 cut(s)	16, 92, 794
Hpy166II	GTNNAC	4 cut(s)	100, 289, 350, 879
Hpy188I	TCNGA	3 cut(s)	483, 547, 939
Hpy188III	TCNNGA	3 cut(s)	227, 398, 404
Hpy8I	GTNNAC	4 cut(s)	100, 289, 350, 879
HpyAV	CCTTC	5 cut(s)	79, 445, 503, 652, 820
HpyCH4III	ACNGT	3 cut(s)	922, 976, 1016
HpyCH4IV	ACGT	1 cut(s)	889
HpyCH4V	TGCA	5 cut(s)	296, 448, 592, 626, 989
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 155, 731, 995
HpyF3I	CTNAG	4 cut(s)	60, 185, 396, 938
HpySE526I	ACGT	1 cut(s)	889
Hsp92I	GRCGYC	1 cut(s)	556
Hsp92II	CATG	4 cut(s)	257, 286, 658, 1028
HspAI	GCGC	1 cut(s)	556
KasI	GGCGCC	1 cut(s)	555
KpnI	GGTACC	1 cut(s)	665
Kzo9I	GATC	5 cut(s)	223, 400, 487, 760, 829
Lsp1109I	GCAGC	7 cut(s)	118, 308, 556, 576, 610, 734, 982
LweI	GCATC	2 cut(s)	145, 300
MaeII	ACGT	1 cut(s)	889
MaeIII	GTNAC	2 cut(s)	708, 885
MalI	GATC	5 cut(s)	225, 402, 489, 762, 831
MboI	GATC	5 cut(s)	223, 400, 487, 760, 829
MboII	GAAGA	6 cut(s)	347, 401, 770, 806, 830, 970
MflI	RGATCY	2 cut(s)	400, 760
MluCI	AATT	6 cut(s)	139, 381, 541, 633, 744, 841
Mly113I	GGCGCC	1 cut(s)	556
MlyI	GAGTC	4 cut(s)	272, 388, 432, 884
MnlI	CCTC	8 cut(s)	40, 61, 196, 379, 432, 569, 574, 933
MseI	TTAA	8 cut(s)	66, 218, 743, 773, 803, 840, 858, 909
MslI	CAYNNNNRTG	1 cut(s)	1029
MspA1I	CMGCKG	2 cut(s)	299, 569
MspR9I	CCNGG	2 cut(s)	117, 928
MvaI	CCWGG	2 cut(s)	117, 928
MwoI	GCNNNNNNNGC	4 cut(s)	56, 155, 731, 995
NarI	GGCGCC	1 cut(s)	556
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	5 cut(s)	223, 400, 487, 760, 829
NlaIII	CATG	4 cut(s)	257, 286, 658, 1028
NlaIV	GGNNCC	3 cut(s)	402, 557, 663
NmuCI	GTSAC	2 cut(s)	708, 885
PceI	AGGCCT	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	1046
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	7 cut(s)	133, 298, 571, 591, 625, 724, 997
PleI	GAGTC	4 cut(s)	272, 388, 431, 883
PluTI	GGCGCC	1 cut(s)	559
PmaCI	CACGTG	1 cut(s)	890
PmlI	CACGTG	1 cut(s)	890
PpsI	GAGTC	4 cut(s)	272, 388, 431, 883
Ppu21I	YACGTR	1 cut(s)	890
PshBI	ATTAAT	2 cut(s)	743, 858
Psp6I	CCWGG	2 cut(s)	115, 926
PspCI	CACGTG	1 cut(s)	890
PspGI	CCWGG	2 cut(s)	115, 926
PspN4I	GGNNCC	3 cut(s)	402, 557, 663
PspPI	GGNCC	1 cut(s)	441
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	734
PsuI	RGATCY	2 cut(s)	400, 760
PvuII	CAGCTG	2 cut(s)	299, 569
RsaI	GTAC	3 cut(s)	517, 663, 906
RsaNI	GTAC	3 cut(s)	516, 662, 905
RseI	CAYNNNNRTG	1 cut(s)	1029
SaqAI	TTAA	8 cut(s)	66, 218, 743, 773, 803, 840, 858, 909
SatI	GCNGC	7 cut(s)	132, 297, 570, 590, 624, 723, 996
Sau3AI	GATC	5 cut(s)	223, 400, 487, 760, 829
Sau96I	GGNCC	1 cut(s)	441
SchI	GAGTC	4 cut(s)	272, 388, 432, 884
ScrFI	CCNGG	2 cut(s)	117, 928
SfaNI	GCATC	2 cut(s)	145, 300
SfcI	CTRYAG	3 cut(s)	294, 735, 752
SfoI	GGCGCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	1029
Sse9I	AATT	6 cut(s)	139, 381, 541, 633, 744, 841
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	2 cut(s)	946, 1021
SspDI	GGCGCC	1 cut(s)	555
SspI	AATATT	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	115, 926
StyI	CCWWGG	2 cut(s)	282, 982
TaaI	ACNGT	3 cut(s)	922, 976, 1016
TaiI	ACGT	1 cut(s)	892
TasI	AATT	6 cut(s)	139, 381, 541, 633, 744, 841
TatI	WGTACW	1 cut(s)	904
TfiI	GAWTC	1 cut(s)	1046
Tru1I	TTAA	8 cut(s)	66, 218, 743, 773, 803, 840, 858, 909
Tru9I	TTAA	8 cut(s)	66, 218, 743, 773, 803, 840, 858, 909
TscAI	CASTG	2 cut(s)	925, 963
TseFI	GTSAC	2 cut(s)	708, 885
TseI	GCWGC	7 cut(s)	131, 296, 569, 589, 623, 722, 995
Tsp45I	GTSAC	2 cut(s)	708, 885
TspDTI	ATGAA	3 cut(s)	671, 821, 1041
TspRI	CASTG	2 cut(s)	925, 963
VspI	ATTAAT	2 cut(s)	743, 858
XapI	RAATTY	2 cut(s)	139, 541
XmiI	GTMKAC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.