Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003852

Physical Location & Seq

Genomic Coordinates Forward (+)

8487157 .. 8491480

Gene Structure 4324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGTGAAGGACACTGCCTTTTATGATGTCTTGGGTGTCAATGTCGATGCCTCCGCTGCTGAAATTAAAAAGGCTTATTATATCAAGGCAAGGCAAGTTCATCCGGATAAAAATCAGGGAGATCCAAAGGCTGCTGAAAATTTCCAAGCACTTGGTGAGGCTTATCAGGTTTTAAGTGATCCAGAAAAGCGTGAAGCATATGACAAAAATGGAAAGGCAGGCATACCACAGGACTCCATGGTAGATCCTGCAGCTGTGTTTGGGATGCTTTTTGGGAGTGATTACTTTGAAGATTATGTCGGCCAACTTGCTTTGGCTTCGTTGTCAGCTGTTGAAGTTGACGAAGATACACAGGATCCTGAAGTCCATAAGCAGAGAGTTCAGGAAAAAATGAGGGCATTGCGGAACGAAAGGGTAGAAAAGCTCATAACTATTCTGAAAGATCGTTTACAACCATTTGTGGATGGTCGTACAGATGAGTTTGTAAGATGGGCAAATGTAGAAGCACAACGTCTCTCAAATGCTGCCTTTGGCGAAGCTATGCTACATACAATTGGTTATATCTATGCTAGGAAAGCTGCAAGAGAGCTTGGAAAAGACAAGCGATACATGAAAGTACCCTTTTTAGCAGAATGGGTGCGAGATAAAGGACATCAGATAAAGTCACAAGTATCAGCAGCTTCAGGTGCTGTATCTTTAATTCAACTACAGGAAGAGCTGAAAAAGATAAACCAAGGTGAAAACAAGGAAGAGAACATAATGAAAGCCATTGAAGAGAAAAAGGATGCAGTGCTTAATTCCCTTTGGCAGATCAATGTGGTTGATATTGAGTCAACCTTGTCACATGTCTGCCTAGCAGTACTTAAAGACCCCACTGTGTCCAAGGATGTTTTGAAGACACGAGCTACAGCATTGAAAAAGTTGGGAACAATTTTCCAAGGTGCAAAGGCAGCTTACAGTAGAGAGAACAGTCTCCGCCATGAAAATGACGACAAAATAGATCCAGCGTCAACATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

340

Amino Acids

37.95

Weight (kDa)

5.98

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	7 - 68	2.4e-26	DnaJ domain
DnaJ-X	PF14308	136 - 324	1.5e-56	X-domain of DnaJ-containing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT4G39150 AT4G39150 AT4G39150
fragaria_vesca	FvH4_2g09560 FvH4_2g09560 FvH4_2g09560
malus_domestica	MD05G1061900.v1.1 MD10G1069700.v1.1
prunus_persica	Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1
pyrus_communis	pycom05g05330 pycom10g05530
rosa_chinensis	RchiOBHm_Chr6g0265851
rosa_laevigata	RLG00000014153
rosa_multiflora	Rmu_sc0007599.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202300
rosa_rugosa	Rorug06G0020800 Rorug06G0020800 Rorug06G0020800 Rorug06G0020900 Rorug06G0020900 Rorug06G0021000
rosa_samantha	Rh6AG142700 Rh6BG142300 Rh6CG139000 Rh6DG126400
rosa_wichuraiana	Rw6G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	3 cut(s)	54, 403, 976
AclWI	GGATC	6 cut(s)	116, 173, 239, 350, 363, 995
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	381, 666
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	3 cut(s)	472, 618, 861
AflIII	ACRYGT	1 cut(s)	844
AgsI	TTSAA	6 cut(s)	290, 335, 704, 773, 895, 916
Alw26I	GTCTC	2 cut(s)	518, 977
AlwI	GGATC	6 cut(s)	116, 173, 239, 350, 363, 995
AlwNI	CAGNNNCTG	1 cut(s)	689
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	7 cut(s)	56, 131, 251, 524, 578, 677, 950
ApoI	RAATTY	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	16, 167, 749
BamHI	GGATCC	1 cut(s)	355
BarI	GAAGNNNNNNTAC	2 cut(s)	528, 560
BauI	CACGAG	1 cut(s)	900
BbsI	GAAGAC	1 cut(s)	902
BbvI	GCAGC	7 cut(s)	43, 118, 263, 511, 565, 689, 962
BccI	CCATC	2 cut(s)	458, 483
BcoDI	GTCTC	2 cut(s)	518, 977
BfaI	CTAG	2 cut(s)	570, 854
BfmI	CTRYAG	3 cut(s)	249, 707, 906
BisI	GCNGC	7 cut(s)	57, 132, 252, 525, 579, 678, 951
BlsI	GCNGC	7 cut(s)	58, 133, 253, 526, 580, 679, 952
BmcAI	AGTACT	1 cut(s)	861
BmiI	GGNNCC	1 cut(s)	357
BmsI	GCATC	3 cut(s)	37, 255, 775
BpiI	GAAGAC	1 cut(s)	902
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	237, 733, 882, 937
BsaWI	WCCGGW	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	103
BseDI	CCNNGG	4 cut(s)	237, 733, 882, 937
BseGI	GGATG	5 cut(s)	100, 270, 469, 790, 892
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	398
BseXI	GCAGC	7 cut(s)	43, 118, 263, 511, 565, 689, 962
BshFI	GGCC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	518, 977
BsmBI	CGTCTC	1 cut(s)	518
BsnI	GGCC	1 cut(s)	303
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	7 cut(s)	121, 178, 244, 355, 442, 810, 1000
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	3 cut(s)	54, 403, 976
BspANI	GGCC	1 cut(s)	303
BspEI	TCCGGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	6 cut(s)	116, 173, 239, 350, 363, 995
BspQI	GCTCTTC	1 cut(s)	708
BsrDI	GCAATG	1 cut(s)	398
BssECI	CCNNGG	4 cut(s)	237, 733, 882, 937
BssMI	GATC	7 cut(s)	121, 178, 244, 355, 442, 810, 1000
BssSI	CACGAG	1 cut(s)	900
BssT1I	CCWWGG	4 cut(s)	237, 733, 882, 937
Bst2BI	CACGAG	1 cut(s)	900
Bst4CI	ACNGT	3 cut(s)	877, 959, 971
Bst6I	CTCTTC	3 cut(s)	708, 744, 768
BstC8I	GCNNGC	1 cut(s)	220
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	5 cut(s)	100, 270, 469, 790, 892
BstKTI	GATC	7 cut(s)	124, 181, 247, 358, 445, 813, 1003
BstMAI	GTCTC	2 cut(s)	518, 977
BstMBI	GATC	7 cut(s)	121, 178, 244, 355, 442, 810, 1000
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 575, 686, 950
BstNSI	RCATGY	1 cut(s)	848
BstSFI	CTRYAG	3 cut(s)	249, 707, 906
BstV1I	GCAGC	7 cut(s)	43, 118, 263, 511, 565, 689, 962
BstV2I	GAAGAC	1 cut(s)	902
BstX2I	RGATCY	4 cut(s)	121, 244, 355, 1000
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	4 cut(s)	121, 244, 355, 1000
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	5 cut(s)	100, 270, 469, 790, 892
BtsI	GCAGTG	2 cut(s)	12, 795
BtsIMutI	CAGTG	3 cut(s)	12, 795, 873
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	689
CseI	GACGC	1 cut(s)	996
Csp6I	GTAC	3 cut(s)	471, 617, 860
CviAII	CATG	4 cut(s)	238, 610, 845, 980
CviQI	GTAC	3 cut(s)	471, 617, 860
DpnI	GATC	7 cut(s)	123, 180, 246, 357, 444, 812, 1002
DpnII	GATC	7 cut(s)	121, 178, 244, 355, 442, 810, 1000
DraIII	CACNNNGTG	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	3 cut(s)	708, 744, 768
EarI	CTCTTC	3 cut(s)	708, 744, 768
EciI	GGCGGA	1 cut(s)	965
Eco130I	CCWWGG	4 cut(s)	237, 733, 882, 937
Eco57I	CTGAAG	2 cut(s)	381, 666
EcoT14I	CCWWGG	4 cut(s)	237, 733, 882, 937
ErhI	CCWWGG	4 cut(s)	237, 733, 882, 937
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	4 cut(s)	241, 613, 848, 983
FatI	CATG	4 cut(s)	237, 609, 844, 979
FauNDI	CATATG	1 cut(s)	199
Fnu4HI	GCNGC	7 cut(s)	57, 132, 252, 525, 579, 678, 951
FokI	GGATG	5 cut(s)	87, 277, 476, 797, 899
Fsp4HI	GCNGC	7 cut(s)	57, 132, 252, 525, 579, 678, 951
FspBI	CTAG	2 cut(s)	570, 854
GluI	GCNGC	7 cut(s)	57, 132, 252, 525, 579, 678, 951
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	1 cut(s)	996
Hin1II	CATG	4 cut(s)	241, 613, 848, 983
HincII	GTYRAC	3 cut(s)	340, 834, 1011
HindII	GTYRAC	3 cut(s)	340, 834, 1011
HinfI	GANTC	2 cut(s)	233, 830
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	3 cut(s)	16, 167, 749
Hpy166II	GTNNAC	4 cut(s)	340, 449, 834, 1011
Hpy188I	TCNGA	2 cut(s)	438, 657
Hpy188III	TCNNGA	4 cut(s)	104, 182, 359, 383
Hpy8I	GTNNAC	4 cut(s)	340, 449, 834, 1011
HpyCH4III	ACNGT	3 cut(s)	877, 959, 971
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	4 cut(s)	251, 581, 788, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 575, 686, 950
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	4 cut(s)	241, 613, 848, 983
Kpn2I	TCCGGA	1 cut(s)	103
Kzo9I	GATC	7 cut(s)	121, 178, 244, 355, 442, 810, 1000
LguI	GCTCTTC	1 cut(s)	708
Lsp1109I	GCAGC	7 cut(s)	43, 118, 263, 511, 565, 689, 962
LweI	GCATC	3 cut(s)	37, 255, 775
MaeI	CTAG	2 cut(s)	570, 854
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	2 cut(s)	663, 840
MalI	GATC	7 cut(s)	123, 180, 246, 357, 444, 812, 1002
MboI	GATC	7 cut(s)	121, 178, 244, 355, 442, 810, 1000
MboII	GAAGA	6 cut(s)	302, 356, 725, 761, 785, 907
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	4 cut(s)	121, 244, 355, 1000
MluCI	AATT	6 cut(s)	63, 139, 552, 699, 796, 930
MlyI	GAGTC	2 cut(s)	227, 839
MnlI	CCTC	3 cut(s)	61, 151, 387
MroI	TCCGGA	1 cut(s)	103
MseI	TTAA	5 cut(s)	66, 173, 698, 795, 864
MslI	CAYNNNNRTG	1 cut(s)	984
MspA1I	CMGCKG	3 cut(s)	56, 254, 329
MspI	CCGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	552
MwoI	GCNNNNNNNGC	4 cut(s)	56, 575, 686, 950
NcoI	CCATGG	1 cut(s)	237
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	7 cut(s)	121, 178, 244, 355, 442, 810, 1000
NlaIII	CATG	4 cut(s)	241, 613, 848, 983
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	2 cut(s)	663, 840
NspI	RCATGY	1 cut(s)	848
PciI	ACATGT	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	708
PkrI	GCNGC	7 cut(s)	58, 133, 253, 526, 580, 679, 952
PleI	GAGTC	2 cut(s)	227, 838
PpsI	GAGTC	2 cut(s)	227, 838
PscI	ACATGT	1 cut(s)	844
PspN4I	GGNNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	4 cut(s)	121, 244, 355, 1000
PvuII	CAGCTG	2 cut(s)	254, 329
RsaI	GTAC	3 cut(s)	472, 618, 861
RsaNI	GTAC	3 cut(s)	471, 617, 860
RseI	CAYNNNNRTG	1 cut(s)	984
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	5 cut(s)	66, 173, 698, 795, 864
SatI	GCNGC	7 cut(s)	57, 132, 252, 525, 579, 678, 951
Sau3AI	GATC	7 cut(s)	121, 178, 244, 355, 442, 810, 1000
ScaI	AGTACT	1 cut(s)	861
SchI	GAGTC	2 cut(s)	227, 839
SfaNI	GCATC	3 cut(s)	37, 255, 775
SfcI	CTRYAG	3 cut(s)	249, 707, 906
SmiMI	CAYNNNNRTG	1 cut(s)	984
Sse9I	AATT	6 cut(s)	63, 139, 552, 699, 796, 930
SsiI	CCGC	3 cut(s)	54, 403, 976
SspMI	CTAG	2 cut(s)	570, 854
StyI	CCWWGG	4 cut(s)	237, 733, 882, 937
TaaI	ACNGT	3 cut(s)	877, 959, 971
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	1 cut(s)	45
TasI	AATT	6 cut(s)	63, 139, 552, 699, 796, 930
TatI	WGTACW	1 cut(s)	859
Tru1I	TTAA	5 cut(s)	66, 173, 698, 795, 864
Tru9I	TTAA	5 cut(s)	66, 173, 698, 795, 864
TscAI	CASTG	3 cut(s)	19, 795, 880
TseFI	GTSAC	2 cut(s)	663, 840
TseI	GCWGC	7 cut(s)	56, 131, 251, 524, 578, 677, 950
Tsp45I	GTSAC	2 cut(s)	663, 840
TspDTI	ATGAA	4 cut(s)	89, 626, 776, 996
TspRI	CASTG	3 cut(s)	19, 795, 880
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	848
XspI	CTAG	2 cut(s)	570, 854
ZrmI	AGTACT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.