Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003852

Physical Location & Seq

Genomic Coordinates Reverse (-)

50282249 .. 50290716

Gene Structure 8468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGAGATCTGGGTCTCTCTACTATAACCTTTATACATCTCTTGCATTCATTTTCCTTCCATGTTGTGATCTGACAAGGATGGTGAAGGACACTGCCTTTTATGATGTGTTGGGTGTCAATGTCGAAGCCTCCGCTGCTGATATTAAAAAGGCTTACTATCTCAAGGCAAGGCAGGTTCACCCAGATAAAAATCCGGGAGATCCAAAGGCTGCTGAAAATTTCCAAGCACTTGGTGAGGCTTATCAGGTTCTAAGTGATCCAGAAAAGCGTGAAGCATATGACAAAAATGGAAAGGAAGGCATACCACAGGACTCCATGGTAGATCCTGCAGCTGTGTTTGGGATGCTTTTTGGGAGTGAATACTTTGATGATTATGTTGGCCAACTTGCTTTGGCTTCTTTATCATCTGTTGAAGTGGACGAAGATACACAGGATCCTGAAGTCCATAGGCAGAGAGTTCAGGAAAAAATGAGGGCATTGCGGAAGGAAAGGGAAGAAAAGCTCATAACTATTCTGAAAGATCGTATACAACCATTTGTGGATGGTCGTACAGATGAGTTTGTAAGATGGGCAAATGTAGAAGCACGGCGCCTCTCAGCAGCTGCCTTTGGCGAGGCTATGCTACATACGATTGGTTATATTTATACTAGGAAAGCTGCAAGAGAACTTGGAAAAGACAAGCGGTACATGAACGTACCCTTTCTAGCAGAATGGGTGCGAGATAAAGGACATCAGATAAAGTCACAAGTGTCAGCAGCTTCAGGTGCACTTTCTGGTGCTGTATCTTTAATTCAGCTACAGGAAGATCTGAAGAAGTTAAACCAAGGTGAAAACAGGGAAGAGAACTTAACGAAAGCCATTGAAGAGAAGAAGGATGCAGTGCTTAATTCCCTCTGGCAGATCAATGTGGTTGATATTGAGTCAACCTTGTCACATGTCTGCCTAGCAGTACTTAAAGACCCCACTGTGTCCAAGGATGTTTTGAAGGCACGGGCTAGAGCATTGAAAAAGTTGGGAACAATCTTCCAAGGTGCAAAGGCAGCTTACAGTAGAGAGAACAGTCTCCGCCATGAAAGGGACGAGAAAATAGATTCAGCGTCGTCATCATGTATGCTGCCTTGCTCCTTGCTTCTTGATGCAGAATCTGTGAATGGATACTTCAGGCATGATAACATCTGTCTCTGGGAGTCGTGGAAGGTTTGCTGGCTGAAATGGTCAGATGTTAGGAAGTTCACTATCCTTATTCTCCTGATTTCTGCAGCATCACTTTTATCAACCTCTTTTGCAGCAGGTAGACAATCCAAGTTTGTCAATAAGTTAGCTAAAGAAGTAGTGGATGAAACTCCAGAGGAAGTATTAGGGAGGCCATTGAGCCACAAGGAAGCTGCCAGAATCCATGAAAGGCTTCTCAGGGCTAACACAAAAGATTATGGACGATACGATCCAGCACCTGCTCTTGTTAAGCCTCCTTTCAAGCTCATTCCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

496

Amino Acids

55.91

Weight (kDa)

8.0

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	33 - 94	1.6e-25	DnaJ domain
DnaJ-X	PF14308	161 - 358	1.3e-54	X-domain of DnaJ-containing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT2G21510 AT4G39150 AT4G39150 AT4G39150
fragaria_vesca	FvH4_2g09560 FvH4_2g09560 FvH4_2g09560
malus_domestica	MD05G1061900.v1.1 MD10G1069700.v1.1
prunus_persica	Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1 Prupe.8G091300_v2.0.a1
pyrus_communis	pycom05g05330 pycom10g05530
rosa_chinensis	RchiOBHm_Chr6g0265851
rosa_laevigata	RLG00000014153
rosa_multiflora	Rmu_sc0007599.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202300
rosa_rugosa	Rorug06G0020800 Rorug06G0020800 Rorug06G0020800 Rorug06G0020900 Rorug06G0020900 Rorug06G0021000
rosa_samantha	Rh6AG142700 Rh6BG142300 Rh6CG139000 Rh6DG126400
rosa_wichuraiana	Rw6G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1459
Acc36I	ACCTGC	3 cut(s)	163, 1280, 1459
AccB1I	GGYRCC	1 cut(s)	588
AccI	GTMKAC	2 cut(s)	526, 1294
AciI	CCGC	4 cut(s)	132, 481, 682, 1066
AclWI	GGATC	6 cut(s)	194, 251, 317, 428, 441, 1436
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	4 cut(s)	459, 744, 830, 1144
AcyI	GRCGYC	1 cut(s)	589
AdeI	CACNNNGTG	1 cut(s)	233
AfaI	GTAC	4 cut(s)	550, 686, 696, 951
AfiI	CCNNNNNNNGG	1 cut(s)	1075
AflIII	ACRYGT	1 cut(s)	934
AgsI	TTSAA	5 cut(s)	413, 863, 985, 1006, 1474
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	3 cut(s)	18, 1067, 1184
Alw44I	GTGCAC	1 cut(s)	765
AlwI	GGATC	6 cut(s)	194, 251, 317, 428, 441, 1436
AlwNI	CAGNNNCTG	3 cut(s)	602, 1145, 1451
AoxI	GGCC	2 cut(s)	379, 1364
ApaLI	GTGCAC	1 cut(s)	765
ApoI	RAATTY	1 cut(s)	217
Asp700I	GAANNNNTTC	1 cut(s)	1404
AspLEI	GCGC	1 cut(s)	591
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	4 cut(s)	94, 170, 245, 839
BaeGI	GKGCMC	1 cut(s)	769
BalI	TGGCCA	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	769
BccI	CCATC	3 cut(s)	73, 536, 561
BceAI	ACGGC	1 cut(s)	602
BciVI	GTATCC	1 cut(s)	1148
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	3 cut(s)	18, 1067, 1184
BfaI	CTAG	4 cut(s)	648, 704, 944, 996
BfmI	CTRYAG	3 cut(s)	327, 797, 1257
BfoI	RGCGCY	1 cut(s)	592
BfuAI	ACCTGC	3 cut(s)	163, 1280, 1459
BfuI	GTATCC	1 cut(s)	1148
BglII	AGATCT	2 cut(s)	5, 805
BmcAI	AGTACT	1 cut(s)	951
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	435, 590
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	4 cut(s)	333, 865, 1126, 1271
BpmI	CTGGAG	1 cut(s)	1329
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	589
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	4 cut(s)	315, 823, 972, 1027
Bsc4I	CCNNNNNNNGG	1 cut(s)	1075
Bse3DI	GCAATG	1 cut(s)	476
Bse8I	GATNNNNATC	1 cut(s)	189
BseDI	CCNNGG	4 cut(s)	315, 823, 972, 1027
BseGI	GGATG	6 cut(s)	84, 348, 547, 880, 982, 1342
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	1075
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	2 cut(s)	609, 1423
BseSI	GKGCMC	1 cut(s)	769
BshFI	GGCC	2 cut(s)	381, 1366
BshNI	GGYRCC	1 cut(s)	588
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	1091
BslI	CCNNNNNNNGG	1 cut(s)	1075
BsmAI	GTCTC	3 cut(s)	18, 1067, 1184
BsmFI	GGGAC	1 cut(s)	1091
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	381, 1366
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	4 cut(s)	132, 481, 682, 1066
BspANI	GGCC	2 cut(s)	381, 1366
BspCNI	CTCAG	2 cut(s)	608, 1422
BspLI	GGNNCC	2 cut(s)	435, 590
BspMAI	CTGCAG	2 cut(s)	331, 1261
BspMI	ACCTGC	3 cut(s)	163, 1280, 1459
BspPI	GGATC	6 cut(s)	194, 251, 317, 428, 441, 1436
BspT107I	GGYRCC	1 cut(s)	588
BspTNI	GGTCTC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	476
BssECI	CCNNGG	4 cut(s)	315, 823, 972, 1027
BssNAI	GTATAC	1 cut(s)	527
BssNI	GRCGYC	1 cut(s)	589
BssT1I	CCWWGG	4 cut(s)	315, 823, 972, 1027
Bst1107I	GTATAC	1 cut(s)	527
Bst4CI	ACNGT	3 cut(s)	967, 1049, 1061
Bst6I	CTCTTC	2 cut(s)	834, 858
BstACI	GRCGYC	1 cut(s)	589
BstC8I	GCNNGC	1 cut(s)	1205
BstDEI	CTNAG	3 cut(s)	251, 595, 1409
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	6 cut(s)	84, 348, 547, 880, 982, 1342
BstH2I	RGCGCY	1 cut(s)	592
BstHHI	GCGC	1 cut(s)	591
BstMAI	GTCTC	3 cut(s)	18, 1067, 1184
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 764, 1040
BstNSI	RCATGY	1 cut(s)	938
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	3 cut(s)	327, 797, 1257
BstSLI	GKGCMC	1 cut(s)	769
BstX2I	RGATCY	5 cut(s)	5, 199, 322, 433, 805
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	5 cut(s)	5, 199, 322, 433, 805
BstZ17I	GTATAC	1 cut(s)	527
BsuI	GTATCC	1 cut(s)	1148
BsuRI	GGCC	2 cut(s)	381, 1366
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	6 cut(s)	84, 348, 547, 880, 982, 1342
BtsI	GCAGTG	2 cut(s)	90, 885
BtsIMutI	CAGTG	3 cut(s)	90, 885, 963
BveI	ACCTGC	3 cut(s)	163, 1280, 1459
Cac8I	GCNNGC	1 cut(s)	1205
CaiI	CAGNNNCTG	3 cut(s)	602, 1145, 1451
CfoI	GCGC	1 cut(s)	591
CseI	GACGC	1 cut(s)	1086
Csp6I	GTAC	4 cut(s)	549, 685, 695, 950
CviAII	CATG	8 cut(s)	60, 316, 688, 935, 1070, 1107, 1166, 1397
CviQI	GTAC	4 cut(s)	549, 685, 695, 950
DdeI	CTNAG	3 cut(s)	251, 595, 1409
DinI	GGCGCC	1 cut(s)	590
DraIII	CACNNNGTG	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	834, 858
EarI	CTCTTC	2 cut(s)	834, 858
EciI	GGCGGA	1 cut(s)	1055
Eco130I	CCWWGG	4 cut(s)	315, 823, 972, 1027
Eco31I	GGTCTC	1 cut(s)	18
Eco57I	CTGAAG	4 cut(s)	459, 744, 830, 1144
EcoT14I	CCWWGG	4 cut(s)	315, 823, 972, 1027
EgeI	GGCGCC	1 cut(s)	590
EheI	GGCGCC	1 cut(s)	590
ErhI	CCWWGG	4 cut(s)	315, 823, 972, 1027
FaeI	CATG	8 cut(s)	63, 319, 691, 938, 1073, 1110, 1169, 1400
FaqI	GGGAC	1 cut(s)	1091
FatI	CATG	8 cut(s)	59, 315, 687, 934, 1069, 1106, 1165, 1396
FauNDI	CATATG	1 cut(s)	277
FblI	GTMKAC	2 cut(s)	526, 1294
FokI	GGATG	6 cut(s)	91, 355, 554, 887, 989, 1349
FspBI	CTAG	4 cut(s)	648, 704, 944, 996
GlaI	GCGC	1 cut(s)	590
GsuI	CTGGAG	1 cut(s)	1329
HaeII	RGCGCY	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	381, 1366
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	1086
HhaI	GCGC	1 cut(s)	591
Hin1I	GRCGYC	1 cut(s)	589
Hin1II	CATG	8 cut(s)	63, 319, 691, 938, 1073, 1110, 1169, 1400
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HincII	GTYRAC	1 cut(s)	924
HindII	GTYRAC	1 cut(s)	924
HinfI	GANTC	6 cut(s)	311, 920, 1091, 1142, 1187, 1392
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	4 cut(s)	94, 170, 245, 839
Hpy166II	GTNNAC	7 cut(s)	178, 418, 527, 767, 924, 1233, 1295
Hpy188I	TCNGA	5 cut(s)	72, 516, 735, 810, 1219
Hpy188III	TCNNGA	6 cut(s)	260, 437, 461, 1133, 1249, 1346
Hpy8I	GTNNAC	7 cut(s)	178, 418, 527, 767, 924, 1233, 1295
Hpy99I	CGWCG	1 cut(s)	1102
HpyAV	CCTTC	7 cut(s)	65, 79, 290, 478, 865, 979, 1189
HpyCH4III	ACNGT	3 cut(s)	967, 1049, 1061
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	9 cut(s)	44, 329, 659, 767, 878, 1034, 1139, 1259, 1286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 764, 1040
HpyF3I	CTNAG	3 cut(s)	251, 595, 1409
HpySE526I	ACGT	1 cut(s)	693
Hsp92I	GRCGYC	1 cut(s)	589
Hsp92II	CATG	8 cut(s)	63, 319, 691, 938, 1073, 1110, 1169, 1400
HspAI	GCGC	1 cut(s)	589
KasI	GGCGCC	1 cut(s)	588
LmnI	GCTCC	1 cut(s)	1127
LweI	GCATC	4 cut(s)	333, 865, 1126, 1271
MaeI	CTAG	4 cut(s)	648, 704, 944, 996
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	2 cut(s)	741, 930
MboII	GAAGA	8 cut(s)	434, 506, 815, 823, 851, 875, 880, 1015
MflI	RGATCY	5 cut(s)	5, 199, 322, 433, 805
MhlI	GDGCHC	1 cut(s)	769
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	3 cut(s)	217, 789, 886
MluNI	TGGCCA	1 cut(s)	381
Mly113I	GGCGCC	1 cut(s)	589
MlyI	GAGTC	3 cut(s)	305, 929, 1196
Mox20I	TGGCCA	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	1404
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	7 cut(s)	144, 788, 818, 848, 885, 954, 1461
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	3 cut(s)	134, 332, 602
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	134, 764, 1040
NarI	GGCGCC	1 cut(s)	589
NciI	CCSGG	1 cut(s)	195
NcoI	CCATGG	1 cut(s)	315
NdeI	CATATG	1 cut(s)	277
NlaIII	CATG	8 cut(s)	63, 319, 691, 938, 1073, 1110, 1169, 1400
NlaIV	GGNNCC	2 cut(s)	435, 590
NmuCI	GTSAC	2 cut(s)	741, 930
NspI	RCATGY	1 cut(s)	938
PaqCI	CACCTGC	1 cut(s)	1459
PciI	ACATGT	1 cut(s)	934
PctI	GAATGC	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	1404
PfeI	GAWTC	3 cut(s)	1091, 1142, 1392
PfoI	TCCNGGA	1 cut(s)	193
PleI	GAGTC	3 cut(s)	305, 928, 1195
PluTI	GGCGCC	1 cut(s)	592
PpsI	GAGTC	3 cut(s)	305, 928, 1195
PscI	ACATGT	1 cut(s)	934
PspN4I	GGNNCC	2 cut(s)	435, 590
PstI	CTGCAG	2 cut(s)	331, 1261
PstNI	CAGNNNCTG	3 cut(s)	602, 1145, 1451
PsuI	RGATCY	5 cut(s)	5, 199, 322, 433, 805
PvuII	CAGCTG	2 cut(s)	332, 602
RsaI	GTAC	4 cut(s)	550, 686, 696, 951
RsaNI	GTAC	4 cut(s)	549, 685, 695, 950
SaqAI	TTAA	7 cut(s)	144, 788, 818, 848, 885, 954, 1461
ScaI	AGTACT	1 cut(s)	951
SchI	GAGTC	3 cut(s)	305, 929, 1196
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	769
SfaNI	GCATC	4 cut(s)	333, 865, 1126, 1271
SfcI	CTRYAG	3 cut(s)	327, 797, 1257
SfoI	GGCGCC	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	217, 789, 886
SsiI	CCGC	4 cut(s)	132, 481, 682, 1066
SspDI	GGCGCC	1 cut(s)	588
SspMI	CTAG	4 cut(s)	648, 704, 944, 996
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	4 cut(s)	315, 823, 972, 1027
TaaI	ACNGT	3 cut(s)	967, 1049, 1061
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	1 cut(s)	123
TasI	AATT	3 cut(s)	217, 789, 886
TatI	WGTACW	1 cut(s)	949
TfiI	GAWTC	3 cut(s)	1091, 1142, 1392
Tru1I	TTAA	7 cut(s)	144, 788, 818, 848, 885, 954, 1461
Tru9I	TTAA	7 cut(s)	144, 788, 818, 848, 885, 954, 1461
TscAI	CASTG	3 cut(s)	97, 885, 970
TseFI	GTSAC	2 cut(s)	741, 930
Tsp45I	GTSAC	2 cut(s)	741, 930
TspDTI	ATGAA	5 cut(s)	37, 704, 1086, 1353, 1413
TspRI	CASTG	3 cut(s)	97, 885, 970
VneI	GTGCAC	1 cut(s)	765
XapI	RAATTY	1 cut(s)	217
XceI	RCATGY	1 cut(s)	938
XmiI	GTMKAC	2 cut(s)	526, 1294
XmnI	GAANNNNTTC	1 cut(s)	1404
XspI	CTAG	4 cut(s)	648, 704, 944, 996
ZrmI	AGTACT	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.