AT4G39670

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011497
Physical Location & Seq
Forward (+)
18409846 .. 18411069
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39670.1

Sequence Viewer

Length: 690 bp
ATGGAAGCAGAAGTAGAAGAGGAAGAAGAAGACATGTTCGAAGACGCCGTGTGTACCACGCAAGCAAGAGTCAACACGCCATTGTCCGTAATCACAGAGGCCTTCGAAGATCTCGCGGATCTGGTGAAACCGCAACGATCTGATGAGATCGATGAAGACGAATTAAGGCTTGATGATTTCTGCAGTGCGTGTACTCACGTCTCTGTTCTCTTCAATTGTCTTGGATTCGCTTTCAAATTTGCGGAAATGGAGTACATCGCCAAGGTTAAGGATTTGGTGGAAGCGTCGAAAACGTTCGAAACGTTACACAACATTCTTGACCTAGACGTGGAGAAAGAAACGGTTAAAACACCGGGGAGCCATTCGCGTAACCTAAGACGTGTGAGACAAGGTTTAGATCTGATCCGAGCCATCTTTGAACAATTTTTGATCGCAGATGACTATTCGTTGAAAGACGCTGCGACAACGGCTTACACGGAAGTGTGTGCACCGTTCCATACGTGGGCCGTTAGAACCGCGGTTTACGCCGGAATGTATACACTTCCGACGAGGGATCAACTTCTCTTACGGCTCAATGAAACTGATCAATCGGTTGAGAAGAACATGAGGAGGTACATGGAAGCATCGCGACCTATCATAGAATATATTGACAAGCTTTACATTGAAAGGAATATTAAACTCGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

229

Amino Acids

26.51

Weight (kDa)

4.56

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 56 - 193 7.5e-36 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 536
AccII CGCG 4 cut(s) 116, 367, 518, 628
AciI CCGC 5 cut(s) 116, 131, 242, 516, 518
AclI AACGTT 2 cut(s) 293, 302
AclWI GGATC 3 cut(s) 126, 397, 561
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 4 cut(s) 55, 193, 254, 614
AfiI CCNNNNNNNGG 2 cut(s) 328, 502
AflIII ACRYGT 2 cut(s) 33, 379
AgsI TTSAA 5 cut(s) 214, 235, 419, 451, 665
AjiI CACGTC 3 cut(s) 199, 328, 380
AleI CACNNNNGTG 1 cut(s) 479
AluBI AGCT 1 cut(s) 655
AluI AGCT 1 cut(s) 655
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 2 cut(s) 205, 379
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 3 cut(s) 126, 397, 561
AoxI GGCC 2 cut(s) 99, 504
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 504
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 136
AsuII TTCGAA 3 cut(s) 39, 105, 297
BaeGI GKGCMC 1 cut(s) 490
BbsI GAAGAC 3 cut(s) 36, 48, 162
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 1 cut(s) 445
BccI CCATC 1 cut(s) 419
BceAI ACGGC 4 cut(s) 32, 483, 491, 584
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 205, 379
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 181
BglII AGATCT 2 cut(s) 109, 397
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
Bme1390I CCNGG 1 cut(s) 354
BmgBI CACGTC 3 cut(s) 199, 328, 380
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 632
BpiI GAAGAC 3 cut(s) 36, 48, 162
Bpu14I TTCGAA 3 cut(s) 39, 105, 297
BpuMI CCSGG 1 cut(s) 354
Bsa29I ATCGAT 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 261, 353, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 502
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 3 cut(s) 261, 353, 516
BseLI CCNNNNNNNGG 2 cut(s) 328, 502
BseRI GAGGAG 1 cut(s) 622
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 1 cut(s) 445
Bsh1236I CGCG 4 cut(s) 116, 367, 518, 628
BshFI GGCC 2 cut(s) 101, 506
BshVI ATCGAT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 490
BsiSI CCGG 2 cut(s) 353, 528
BslI CCNNNNNNNGG 2 cut(s) 328, 502
BsmAI GTCTC 2 cut(s) 205, 379
BsmBI CGTCTC 1 cut(s) 205
BsnI GGCC 2 cut(s) 101, 506
Bsp119I TTCGAA 3 cut(s) 39, 105, 297
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 9 cut(s) 109, 118, 137, 147, 397, 402, 429, 553, 583
Bsp68I TCGCGA 1 cut(s) 628
BspACI CCGC 5 cut(s) 116, 131, 242, 516, 518
BspANI GGCC 2 cut(s) 101, 506
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 4 cut(s) 116, 367, 518, 628
BspLI GGNNCC 1 cut(s) 359
BspMAI CTGCAG 1 cut(s) 185
BspPI GGATC 3 cut(s) 126, 397, 561
BspT104I TTCGAA 3 cut(s) 39, 105, 297
BssECI CCNNGG 3 cut(s) 261, 353, 516
BssMI GATC 9 cut(s) 109, 118, 137, 147, 397, 402, 429, 553, 583
BssNAI GTATAC 1 cut(s) 537
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 261
Bst1107I GTATAC 1 cut(s) 537
Bst4CI ACNGT 2 cut(s) 343, 492
Bst6I CTCTTC 2 cut(s) 12, 215
BstACI GRCGYC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 501
BstBI TTCGAA 3 cut(s) 39, 105, 297
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 374
BstDSI CCRYGG 1 cut(s) 516
BstFNI CGCG 4 cut(s) 116, 367, 518, 628
BstKTI GATC 9 cut(s) 112, 121, 140, 150, 400, 405, 432, 556, 586
BstMAI GTCTC 2 cut(s) 205, 379
BstMBI GATC 9 cut(s) 109, 118, 137, 147, 397, 402, 429, 553, 583
BstMWI GCNNNNNNNGC 2 cut(s) 467, 524
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 4 cut(s) 116, 367, 518, 628
BstV1I GCAGC 1 cut(s) 445
BstV2I GAAGAC 3 cut(s) 36, 48, 162
BstX2I RGATCY 3 cut(s) 109, 118, 397
BstYI RGATCY 3 cut(s) 109, 118, 397
BstZ17I GTATAC 1 cut(s) 537
Bsu15I ATCGAT 1 cut(s) 150
BsuRI GGCC 2 cut(s) 101, 506
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 516
BtgZI GCGATG 2 cut(s) 241, 609
BtrI CACGTC 3 cut(s) 199, 328, 380
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 190
BtuMI TCGCGA 1 cut(s) 628
Cac8I GCNNGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 504
Cfr42I CCGCGG 1 cut(s) 519
ClaI ATCGAT 1 cut(s) 150
CseI GACGC 3 cut(s) 53, 273, 464
Csp6I GTAC 4 cut(s) 54, 192, 253, 613
CviAII CATG 3 cut(s) 34, 604, 616
CviJI RGCY 8 cut(s) 101, 169, 360, 410, 470, 506, 571, 655
CviKI_1 RGCY 8 cut(s) 101, 169, 360, 410, 470, 506, 571, 655
CviQI GTAC 4 cut(s) 54, 192, 253, 613
DdeI CTNAG 1 cut(s) 374
DpnI GATC 9 cut(s) 111, 120, 139, 149, 399, 404, 431, 555, 585
DpnII GATC 9 cut(s) 109, 118, 137, 147, 397, 402, 429, 553, 583
Eam1104I CTCTTC 2 cut(s) 12, 215
EarI CTCTTC 2 cut(s) 12, 215
Eco130I CCWWGG 1 cut(s) 261
Eco147I AGGCCT 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 3 cut(s) 37, 607, 619
FaiI YATR 7 cut(s) 35, 498, 537, 605, 617, 638, 645
FatI CATG 3 cut(s) 33, 603, 615
FbaI TGATCA 1 cut(s) 583
FblI GTMKAC 1 cut(s) 536
Fnu4HI GCNGC 1 cut(s) 459
Fsp4HI GCNGC 1 cut(s) 459
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 459
HaeIII GGCC 2 cut(s) 101, 506
HapII CCGG 2 cut(s) 353, 528
HgaI GACGC 3 cut(s) 53, 273, 464
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 3 cut(s) 37, 607, 619
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 2 cut(s) 69, 225
HpaII CCGG 2 cut(s) 353, 528
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 6 cut(s) 54, 73, 192, 488, 523, 537
Hpy188I TCNGA 4 cut(s) 142, 402, 407, 546
Hpy188III TCNNGA 2 cut(s) 317, 627
Hpy8I GTNNAC 6 cut(s) 54, 73, 192, 488, 523, 537
Hpy99I CGWCG 2 cut(s) 289, 550
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 343, 492
HpyCH4IV ACGT 6 cut(s) 198, 293, 302, 327, 379, 500
HpyCH4V TGCA 2 cut(s) 183, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 524
HpyF3I CTNAG 1 cut(s) 374
HpySE526I ACGT 6 cut(s) 198, 293, 302, 327, 379, 500
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 3 cut(s) 37, 607, 619
Ksp22I TGATCA 1 cut(s) 583
KspI CCGCGG 1 cut(s) 519
Kzo9I GATC 9 cut(s) 109, 118, 137, 147, 397, 402, 429, 553, 583
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 3 cut(s) 107, 366, 541
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 1 cut(s) 632
MaeI CTAG 1 cut(s) 323
MaeII ACGT 6 cut(s) 198, 293, 302, 327, 379, 500
MaeIII GTNAC 2 cut(s) 303, 368
MalI GATC 9 cut(s) 111, 120, 139, 149, 399, 404, 431, 555, 585
MboI GATC 9 cut(s) 109, 118, 137, 147, 397, 402, 429, 553, 583
MboII GAAGA 9 cut(s) 29, 35, 38, 41, 53, 119, 167, 202, 610
MfeI CAATTG 1 cut(s) 214
MflI RGATCY 3 cut(s) 109, 118, 397
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 4 cut(s) 161, 214, 236, 422
MlyI GAGTC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 569
MnlI CCTC 5 cut(s) 13, 91, 543, 600, 603
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 4 cut(s) 164, 267, 345, 675
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 2 cut(s) 353, 528
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 214
MvnI CGCG 4 cut(s) 116, 367, 518, 628
MwoI GCNNNNNNNGC 2 cut(s) 467, 524
NciI CCSGG 1 cut(s) 354
NdeII GATC 9 cut(s) 109, 118, 137, 147, 397, 402, 429, 553, 583
NlaIII CATG 3 cut(s) 37, 607, 619
NlaIV GGNNCC 1 cut(s) 359
NruI TCGCGA 1 cut(s) 628
NspI RCATGY 1 cut(s) 37
NspV TTCGAA 3 cut(s) 39, 105, 297
OliI CACNNNNGTG 1 cut(s) 479
PceI AGGCCT 1 cut(s) 101
PciI ACATGT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 3 cut(s) 45, 156, 299
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 225
PkrI GCNGC 1 cut(s) 460
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Ppu21I YACGTR 1 cut(s) 501
PscI ACATGT 1 cut(s) 33
Psp1406I AACGTT 2 cut(s) 293, 302
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 504
PstI CTGCAG 1 cut(s) 185
PsuI RGATCY 3 cut(s) 109, 118, 397
RruI TCGCGA 1 cut(s) 628
RsaI GTAC 4 cut(s) 55, 193, 254, 614
RsaNI GTAC 4 cut(s) 54, 192, 253, 613
RseI CAYNNNNRTG 1 cut(s) 479
SacII CCGCGG 1 cut(s) 519
SaqAI TTAA 4 cut(s) 164, 267, 345, 675
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 9 cut(s) 109, 118, 137, 147, 397, 402, 429, 553, 583
Sau96I GGNCC 1 cut(s) 504
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 490
SfaNI GCATC 1 cut(s) 632
SfcI CTRYAG 1 cut(s) 181
Sfr303I CCGCGG 1 cut(s) 519
SfuI TTCGAA 3 cut(s) 39, 105, 297
SgrBI CCGCGG 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 479
Sse9I AATT 4 cut(s) 161, 214, 236, 422
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 5 cut(s) 116, 131, 242, 516, 518
SspI AATATT 1 cut(s) 673
SspMI CTAG 1 cut(s) 323
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 343, 492
TaiI ACGT 6 cut(s) 201, 296, 305, 330, 382, 503
TaqI TCGA 6 cut(s) 39, 105, 150, 287, 297, 681
TasI AATT 4 cut(s) 161, 214, 236, 422
TatI WGTACW 2 cut(s) 191, 252
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 4 cut(s) 164, 267, 345, 675
Tru9I TTAA 4 cut(s) 164, 267, 345, 675
TscAI CASTG 1 cut(s) 190
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 2 cut(s) 168, 591
TspGWI ACGGA 2 cut(s) 76, 491
TspRI CASTG 1 cut(s) 190
VneI GTGCAC 1 cut(s) 486
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.