FvH4_4g27590

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011497
Physical Location & Seq
Forward (+)
28524344 .. 28527005
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27590.t1

Sequence Viewer

Length: 687 bp
ATGACTCTAGGGTGGCGCTGGAAACACAGGGCAGCAGCCATTAACGATACGGCAGAGATGTCGATGGAAAACGCCACGTCACCGACGCCTCTGACCTCCATAGTCGAGGCCTTTGATAAGCTGGCCAAGATTCTCGAGTCCCAACAACAAGAAGGTGATTTGCATTTGGATACGTTCTGCCAGGCTTGCTCTTTAGTCTCCATCCTCTTCAGCTGCCTCGGCCTCGCTTTCAAGTTCGCCGAGATGGAGTACGTCTCAAAGGTTGAGACTCTCTTGCAAGCAGCAAAGACTTGCGACACTTTAGAAAACATACTTGATTTTGATGTTGCAAATGACACTGTCAAATCGCCAGGCAGCCGCTCACGCAACTTACGCCGAGTTAGGCAGGGTCTTGACCTCATCAGAGCTATATTTGAAAACTTTTTGGCCACAAATGATGACTCCTTAAAGGAGGCAGCTTCAACAGCTTATGCCCAAGTTTGTGCCCCATATCACACTTGGGCAGTCAGGACGGCAGTAGCTGCTGGGATGTATGCTCTTCCGTCAAGGGATCAACTTCTGATAAATCTCAAAGAAACTCATCAATCGGCAGAGATAAAAATGAAACAGTACATCCGTGCCGCACTTCCGGTTATCCACTACATTGACAACCTGTACCTTTCCAGGAATATCGTTTTGGACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

229

Amino Acids

25.61

Weight (kDa)

5.75

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 55 - 191 3.5e-36 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 360
AciI CCGC 2 cut(s) 358, 621
AclWI GGATC 1 cut(s) 558
AcoI YGGCCR 2 cut(s) 123, 426
AcuI CTGAAG 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 3 cut(s) 251, 611, 656
AgsI TTSAA 3 cut(s) 232, 416, 462
AjiI CACGTC 1 cut(s) 78
AjnI CCWGG 3 cut(s) 180, 349, 662
AjuI GAANNNNNNNTTGG 1 cut(s) 659
AluBI AGCT 6 cut(s) 121, 213, 407, 458, 467, 521
AluI AGCT 6 cut(s) 121, 213, 407, 458, 467, 521
Alw26I GTCTC 3 cut(s) 202, 259, 260
AlwI GGATC 1 cut(s) 558
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 4 cut(s) 108, 123, 220, 426
ApeKI GCWGC 7 cut(s) 32, 35, 213, 281, 354, 455, 521
AspLEI GCGC 1 cut(s) 18
AsuHPI GGTGA 2 cut(s) 72, 167
AvaI CYCGRG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 487
BalI TGGCCA 2 cut(s) 125, 428
BbvI GCAGC 7 cut(s) 44, 47, 200, 293, 366, 467, 508
BccI CCATC 3 cut(s) 58, 209, 238
BceAI ACGGC 2 cut(s) 66, 528
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BciT130I CCWGG 3 cut(s) 182, 351, 664
BciVI GTATCC 1 cut(s) 163
BcoDI GTCTC 3 cut(s) 202, 259, 260
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 19
BfuI GTATCC 1 cut(s) 163
BisI GCNGC 9 cut(s) 33, 36, 214, 282, 355, 358, 456, 522, 621
BlsI GCNGC 9 cut(s) 34, 37, 215, 283, 356, 359, 457, 523, 622
Bme1390I CCNGG 3 cut(s) 182, 351, 664
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 78
BmrFI CCNGG 3 cut(s) 182, 351, 664
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 628
Bse1I ACTGG 1 cut(s) 686
BseBI CCWGG 3 cut(s) 182, 351, 664
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 3 cut(s) 201, 534, 612
BseNI ACTGG 1 cut(s) 686
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 7 cut(s) 44, 47, 200, 293, 366, 467, 508
BseYI CCCAGC 1 cut(s) 524
BshFI GGCC 4 cut(s) 110, 125, 222, 428
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 629
BslFI GGGAC 1 cut(s) 124
BsmAI GTCTC 3 cut(s) 202, 259, 260
BsmBI CGTCTC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 4 cut(s) 110, 125, 222, 428
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 1 cut(s) 550
BspACI CCGC 2 cut(s) 358, 621
BspANI GGCC 4 cut(s) 110, 125, 222, 428
BspPI GGATC 1 cut(s) 558
BspQI GCTCTTC 1 cut(s) 543
BsrBI CCGCTC 1 cut(s) 360
BsrI ACTGG 1 cut(s) 686
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 550
BssNI GRCGYC 1 cut(s) 86
Bst2UI CCWGG 3 cut(s) 182, 351, 664
Bst4CI ACNGT 2 cut(s) 340, 609
Bst6I CTCTTC 2 cut(s) 212, 543
BstACI GRCGYC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 3 cut(s) 123, 187, 279
BstF5I GGATG 3 cut(s) 201, 534, 612
BstH2I RGCGCY 1 cut(s) 19
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 553
BstMAI GTCTC 3 cut(s) 202, 259, 260
BstMBI GATC 1 cut(s) 550
BstMWI GCNNNNNNNGC 6 cut(s) 186, 219, 363, 372, 464, 521
BstNI CCWGG 3 cut(s) 182, 351, 664
BstSCI CCNGG 3 cut(s) 180, 349, 662
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 7 cut(s) 44, 47, 200, 293, 366, 467, 508
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 4 cut(s) 110, 125, 222, 428
BtrI CACGTC 1 cut(s) 78
BtsCI GGATG 3 cut(s) 201, 534, 612
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 3 cut(s) 123, 187, 279
CaiI CAGNNNCTG 1 cut(s) 521
CfoI GCGC 1 cut(s) 18
CseI GACGC 1 cut(s) 94
Csp6I GTAC 3 cut(s) 250, 610, 655
CviQI GTAC 3 cut(s) 250, 610, 655
DpnI GATC 1 cut(s) 552
DpnII GATC 1 cut(s) 550
EaeI YGGCCR 2 cut(s) 123, 426
Eam1104I CTCTTC 2 cut(s) 212, 543
EarI CTCTTC 2 cut(s) 212, 543
Eco147I AGGCCT 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 134
EcoRII CCWGG 3 cut(s) 180, 349, 662
Esp3I CGTCTC 1 cut(s) 259
FaiI YATR 6 cut(s) 101, 311, 410, 471, 490, 534
FaqI GGGAC 1 cut(s) 124
Fnu4HI GCNGC 9 cut(s) 33, 36, 214, 282, 355, 358, 456, 522, 621
FokI GGATG 3 cut(s) 188, 541, 599
Fsp4HI GCNGC 9 cut(s) 33, 36, 214, 282, 355, 358, 456, 522, 621
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 17
GluI GCNGC 9 cut(s) 33, 36, 214, 282, 355, 358, 456, 522, 621
GsaI CCCAGC 1 cut(s) 528
HaeII RGCGCY 1 cut(s) 19
HaeIII GGCC 4 cut(s) 110, 125, 222, 428
HapII CCGG 1 cut(s) 629
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 86
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 5 cut(s) 4, 130, 137, 268, 440
HpaII CCGG 1 cut(s) 629
HphI GGTGA 2 cut(s) 72, 167
Hpy188I TCNGA 3 cut(s) 93, 404, 561
Hpy188III TCNNGA 3 cut(s) 134, 392, 508
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 340, 609
HpyCH4IV ACGT 3 cut(s) 77, 173, 252
HpyCH4V TGCA 3 cut(s) 163, 277, 329
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 219, 363, 372, 464, 521
HpySE526I ACGT 3 cut(s) 77, 173, 252
Hsp92I GRCGYC 1 cut(s) 86
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 550
LguI GCTCTTC 1 cut(s) 543
Lsp1109I GCAGC 7 cut(s) 44, 47, 200, 293, 366, 467, 508
MaeI CTAG 1 cut(s) 8
MaeII ACGT 3 cut(s) 77, 173, 252
MaeIII GTNAC 1 cut(s) 78
MalI GATC 1 cut(s) 552
MbiI CCGCTC 1 cut(s) 360
MboI GATC 1 cut(s) 550
MboII GAAGA 2 cut(s) 199, 530
MhlI GDGCHC 1 cut(s) 487
MlsI TGGCCA 2 cut(s) 125, 428
MluNI TGGCCA 2 cut(s) 125, 428
MlyI GAGTC 3 cut(s) 146, 262, 434
MnlI CCTC 8 cut(s) 99, 100, 106, 215, 227, 233, 407, 445
Mox20I TGGCCA 2 cut(s) 125, 428
MscI TGGCCA 2 cut(s) 125, 428
MseI TTAA 2 cut(s) 42, 446
Msp20I TGGCCA 2 cut(s) 125, 428
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 1 cut(s) 629
MspR9I CCNGG 3 cut(s) 182, 351, 664
MvaI CCWGG 3 cut(s) 182, 351, 664
MwoI GCNNNNNNNGC 6 cut(s) 186, 219, 363, 372, 464, 521
NdeII GATC 1 cut(s) 550
NmeAIII GCCGAG 3 cut(s) 198, 265, 401
NmuCI GTSAC 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 134
PceI AGGCCT 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 130
PflFI GACNNNGTC 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 662
PkrI GCNGC 9 cut(s) 34, 37, 215, 283, 356, 359, 457, 523, 622
PleI GAGTC 3 cut(s) 145, 262, 434
PpsI GAGTC 3 cut(s) 145, 262, 434
Psp6I CCWGG 3 cut(s) 180, 349, 662
PspFI CCCAGC 1 cut(s) 524
PspGI CCWGG 3 cut(s) 180, 349, 662
PstNI CAGNNNCTG 1 cut(s) 521
PsyI GACNNNGTC 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 213
RsaI GTAC 3 cut(s) 251, 611, 656
RsaNI GTAC 3 cut(s) 250, 610, 655
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 42, 446
SatI GCNGC 9 cut(s) 33, 36, 214, 282, 355, 358, 456, 522, 621
Sau3AI GATC 1 cut(s) 550
SchI GAGTC 3 cut(s) 146, 262, 434
ScrFI CCNGG 3 cut(s) 182, 351, 664
SduI GDGCHC 1 cut(s) 487
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SseBI AGGCCT 1 cut(s) 110
SsiI CCGC 2 cut(s) 358, 621
SspMI CTAG 1 cut(s) 8
StuI AGGCCT 1 cut(s) 110
StyD4I CCNGG 3 cut(s) 180, 349, 662
TaaI ACNGT 2 cut(s) 340, 609
TaiI ACGT 3 cut(s) 80, 176, 255
TaqI TCGA 3 cut(s) 62, 105, 135
TatI WGTACW 1 cut(s) 609
TauI GCSGC 2 cut(s) 360, 623
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 2 cut(s) 42, 446
Tru9I TTAA 2 cut(s) 42, 446
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 7 cut(s) 32, 35, 213, 281, 354, 455, 521
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 617
TspGWI ACGGA 2 cut(s) 531, 605
TspRI CASTG 1 cut(s) 343
Tth111I GACNNNGTC 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 495
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.