Prupe.1G309200_v2.0.a1

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011497
Physical Location & Seq
Reverse (-)
30088418 .. 30090286
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G309200.2

Sequence Viewer

Length: 681 bp
ATGATTTTAGGGGTGAAACGCAGCGGTAGCGGAGCCATGGATGGTATGGCAATGGCAGAGTCGACGTCCACGCCTCCTCTAACATCCATTGTTGAAGCCTTTGAGGAGTTGGGCAAGTTCCTCCAATCCCAACAACAACAACAACAACAGAAGCTAAGTTTGGATACCTTCTGCCAGGCCTCTTCTCTCGTCTCCATCCTCTTCAGTTGCCTTGGCCTCGCTTTCAAGTTCGCCGAGATGGAGTACGTCTCCAAGGTTGATGATCTTGTGGAAGCATCAAAGACTTACGACACCTTAGAAAGTATAATTGATTTTGATGTTGCAAATGACATGGTAAAAACCCCGGGAAGCCACTCACGTAATTTGCGCCGAGTTAGGCAGGGCCTTGACCTCATCAGAGCTTTATTTGAACAATTTTTGTCAACCGATGACTATTCTTTAAGGGAAGCAGCTTCTACAGCTTATGCCCAAGTTTGTGCGCCATACCACAGTTGGACAATCAGGACAGCAGTTGCCGCCGGCATGTATGCTCTTCCGTCAAGGGATCAACTTCTGGTGAATCTCGAAGAAACCCACCAGTCAGCAGAGAAGAAGATGAAAAGGTACATCCGGGCCTCACGTCCGGTGATTGAGTACATCGACAAGCTATACCTTTCTAGGAGTATCACTTTGGACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

227

Amino Acids

25.39

Weight (kDa)

5.47

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 62
AciI CCGC 3 cut(s) 24, 30, 516
AclWI GGATC 1 cut(s) 552
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 3 cut(s) 245, 605, 635
AgsI TTSAA 3 cut(s) 95, 226, 410
AjiI CACGTC 1 cut(s) 620
AjnI CCWGG 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 5 cut(s) 154, 401, 452, 461, 646
AluI AGCT 5 cut(s) 154, 401, 452, 461, 646
Alw26I GTCTC 2 cut(s) 196, 253
AlwI GGATC 1 cut(s) 552
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 4 cut(s) 177, 214, 382, 612
ApeKI GCWGC 2 cut(s) 21, 449
AspLEI GCGC 2 cut(s) 369, 481
AspS9I GGNCC 2 cut(s) 382, 612
AsuC2I CCSGG 3 cut(s) 344, 345, 611
AsuHPI GGTGA 3 cut(s) 25, 568, 637
AvaI CYCGRG 1 cut(s) 343
BbvI GCAGC 2 cut(s) 33, 461
BccI CCATC 3 cut(s) 35, 203, 232
BciT130I CCWGG 1 cut(s) 176
BciVI GTATCC 1 cut(s) 157
BcnI CCSGG 3 cut(s) 344, 345, 611
BcoDI GTCTC 2 cut(s) 196, 253
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 456
BfuI GTATCC 1 cut(s) 157
BisI GCNGC 3 cut(s) 22, 450, 516
BlsI GCNGC 3 cut(s) 23, 451, 517
Bme1390I CCNGG 4 cut(s) 176, 344, 345, 611
BmeT110I CYCGRG 1 cut(s) 343
BmgBI CACGTC 1 cut(s) 620
BmgT120I GGNCC 2 cut(s) 382, 612
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 4 cut(s) 176, 344, 345, 611
BmsI GCATC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpuMI CCSGG 3 cut(s) 344, 345, 611
BsaAI YACGTR 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 5 cut(s) 36, 211, 252, 342, 343
BsaWI WCCGGW 1 cut(s) 622
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 2 cut(s) 577, 680
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 5 cut(s) 36, 211, 252, 342, 343
BseGI GGATG 4 cut(s) 46, 83, 195, 606
BseMI GCAATG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 577, 680
BseRI GAGGAG 2 cut(s) 66, 119
BseXI GCAGC 2 cut(s) 33, 461
BshFI GGCC 4 cut(s) 179, 216, 384, 614
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 4 cut(s) 344, 519, 610, 623
BsmAI GTCTC 2 cut(s) 196, 253
BsmBI CGTCTC 2 cut(s) 196, 253
BsnI GGCC 4 cut(s) 179, 216, 384, 614
BsoBI CYCGRG 1 cut(s) 343
Bsp143I GATC 2 cut(s) 262, 544
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 3 cut(s) 24, 30, 516
BspANI GGCC 4 cut(s) 179, 216, 384, 614
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 552
BspQI GCTCTTC 1 cut(s) 537
BsrDI GCAATG 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 2 cut(s) 577, 680
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 5 cut(s) 36, 211, 252, 342, 343
BssMI GATC 2 cut(s) 262, 544
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 3 cut(s) 36, 211, 252
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 3 cut(s) 187, 206, 537
BstACI GRCGYC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 2 cut(s) 155, 295
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 4 cut(s) 46, 83, 195, 606
BstHHI GCGC 2 cut(s) 369, 481
BstKTI GATC 2 cut(s) 265, 547
BstMAI GTCTC 2 cut(s) 196, 253
BstMBI GATC 2 cut(s) 262, 544
BstMWI GCNNNNNNNGC 3 cut(s) 27, 458, 515
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 4 cut(s) 174, 342, 343, 609
BstSFI CTRYAG 1 cut(s) 456
BstV1I GCAGC 2 cut(s) 33, 461
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 4 cut(s) 179, 216, 384, 614
BtgI CCRYGG 1 cut(s) 36
BtrI CACGTC 1 cut(s) 620
BtsCI GGATG 4 cut(s) 46, 83, 195, 606
Cac8I GCNNGC 1 cut(s) 520
CfoI GCGC 2 cut(s) 369, 481
Cfr10I RCCGGY 1 cut(s) 518
Cfr13I GGNCC 2 cut(s) 382, 612
Cfr9I CCCGGG 1 cut(s) 343
Csp6I GTAC 3 cut(s) 244, 604, 634
CviAII CATG 3 cut(s) 37, 331, 523
CviQI GTAC 3 cut(s) 244, 604, 634
DdeI CTNAG 2 cut(s) 155, 295
DpnI GATC 2 cut(s) 264, 546
DpnII GATC 2 cut(s) 262, 544
Eam1104I CTCTTC 3 cut(s) 187, 206, 537
EarI CTCTTC 3 cut(s) 187, 206, 537
Eco130I CCWWGG 3 cut(s) 36, 211, 252
Eco147I AGGCCT 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 3 cut(s) 36, 211, 252
ErhI CCWWGG 3 cut(s) 36, 211, 252
Esp3I CGTCTC 2 cut(s) 196, 253
FaeI CATG 3 cut(s) 40, 334, 526
FaiI YATR 9 cut(s) 38, 47, 305, 332, 465, 484, 524, 528, 649
FatI CATG 3 cut(s) 36, 330, 522
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 3 cut(s) 22, 450, 516
FokI GGATG 4 cut(s) 53, 70, 182, 593
Fsp4HI GCNGC 3 cut(s) 22, 450, 516
FspBI CTAG 1 cut(s) 657
GlaI GCGC 2 cut(s) 368, 480
GluI GCNGC 3 cut(s) 22, 450, 516
HaeIII GGCC 4 cut(s) 179, 216, 384, 614
HapII CCGG 4 cut(s) 344, 519, 610, 623
HhaI GCGC 2 cut(s) 369, 481
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 3 cut(s) 40, 334, 526
Hin6I GCGC 2 cut(s) 367, 479
HinP1I GCGC 2 cut(s) 367, 479
HincII GTYRAC 2 cut(s) 63, 423
HindII GTYRAC 2 cut(s) 63, 423
HinfI GANTC 2 cut(s) 59, 559
HpaII CCGG 4 cut(s) 344, 519, 610, 623
HphI GGTGA 3 cut(s) 25, 568, 637
Hpy166II GTNNAC 3 cut(s) 63, 69, 423
Hpy188I TCNGA 1 cut(s) 398
Hpy188III TCNNGA 2 cut(s) 502, 563
Hpy8I GTNNAC 3 cut(s) 63, 69, 423
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 4 cut(s) 65, 246, 358, 619
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 458, 515
HpyF3I CTNAG 2 cut(s) 155, 295
HpySE526I ACGT 4 cut(s) 65, 246, 358, 619
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 3 cut(s) 40, 334, 526
HspAI GCGC 2 cut(s) 367, 479
KroI GCCGGC 1 cut(s) 518
KroNI GCCGGC 1 cut(s) 520
Kzo9I GATC 2 cut(s) 262, 544
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 2 cut(s) 33, 461
LweI GCATC 1 cut(s) 284
MaeI CTAG 1 cut(s) 657
MaeII ACGT 4 cut(s) 65, 246, 358, 619
MalI GATC 2 cut(s) 264, 546
MboI GATC 2 cut(s) 262, 544
MboII GAAGA 6 cut(s) 174, 193, 524, 578, 601, 604
MluCI AATT 3 cut(s) 306, 361, 413
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 473
MnlI CCTC 9 cut(s) 84, 87, 97, 131, 190, 209, 227, 401, 625
MroNI GCCGGC 1 cut(s) 518
MseI TTAA 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 4 cut(s) 344, 519, 610, 623
MspR9I CCNGG 4 cut(s) 176, 344, 345, 611
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 27, 458, 515
NaeI GCCGGC 1 cut(s) 520
NciI CCSGG 3 cut(s) 344, 345, 611
NcoI CCATGG 1 cut(s) 36
NdeII GATC 2 cut(s) 262, 544
NgoMIV GCCGGC 1 cut(s) 518
NlaIII CATG 3 cut(s) 40, 334, 526
NlaIV GGNNCC 1 cut(s) 34
NmeAIII GCCGAG 2 cut(s) 259, 395
NspI RCATGY 1 cut(s) 526
PceI AGGCCT 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 537
PdiI GCCGGC 1 cut(s) 520
PfeI GAWTC 1 cut(s) 559
PkrI GCNGC 3 cut(s) 23, 451, 517
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Ppu21I YACGTR 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 382, 612
RsaI GTAC 3 cut(s) 245, 605, 635
RsaNI GTAC 3 cut(s) 244, 604, 634
SalI GTCGAC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 3 cut(s) 22, 450, 516
Sau3AI GATC 2 cut(s) 262, 544
Sau96I GGNCC 2 cut(s) 382, 612
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 4 cut(s) 176, 344, 345, 611
SfaNI GCATC 1 cut(s) 284
SfcI CTRYAG 1 cut(s) 456
SmaI CCCGGG 1 cut(s) 345
Sse9I AATT 3 cut(s) 306, 361, 413
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 3 cut(s) 24, 30, 516
SspMI CTAG 1 cut(s) 657
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 4 cut(s) 174, 342, 343, 609
StyI CCWWGG 3 cut(s) 36, 211, 252
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 4 cut(s) 68, 249, 361, 622
TaqI TCGA 3 cut(s) 62, 564, 639
TasI AATT 3 cut(s) 306, 361, 413
TatI WGTACW 1 cut(s) 633
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TseI GCWGC 2 cut(s) 21, 449
TspDTI ATGAA 1 cut(s) 611
TspGWI ACGGA 1 cut(s) 525
TspMI CCCGGG 1 cut(s) 343
XceI RCATGY 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 2 cut(s) 43, 489
XmaI CCCGGG 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 62
XspI CTAG 1 cut(s) 657
ZraI GACGTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.