pycom16g03830

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011497
Physical Location & Seq
Forward (+)
2398262 .. 2399447
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g03830.3

Sequence Viewer

Length: 696 bp
ATGATTTTGACGGCAAAGCACTGCGGCGGAAGAAGAGCCATGGACGGTATGGAAATGGCAGAGTCGACGTCGATGCCTCCTCTGACGGCAATCGTTGAGGCGTTTGAGGAGTTGGGCAAGTTCCTCCAATCCCATTCCCATAACTCCCAACAAAAACAACAGCAAACGCTGCGTTTGGATACCTTCTGCCAGGCTTCCACTCTCGTCTCCATCCTCTTCAGCTGCCTTGGCCTCGCTTTCAAGTTCGCCGAGATGGAGTACGTCTCCAAGGTTGAAGATCTTGTGGAGGCGTCAAAGACTTACGACACATTAGAAAGTCTTCTGGATTTTGATGTTGCTAATGACACGGTAAAATCCCCGGGAAGCCATTCCCGTAATCTGCGCCGTGTCCGGCAGGGTCTCGACCTCGTCAGAGCTCTGTTCGAACAATTCTTGTCTACCGATGATTACTCTTTAAGGGAAGCAGCTTCCACAGCTTATGCCAATGTTTGTGCGCCATACCACAGTTGGACAATCAGGACAGCGGTTGCCGCCGGAATGTATGCTCTTCCGTCAAGGGATCAACTTCTGGTGAATCTCGAAGAGACCCATCAGTCAGCAGAGAAGAAGATGAAAAGGTACATCCAAGCCTCACGTCCGGTTATCGAGTACATCGACAGGCTATACCTTTCTAGGAACATCTCCTTGGACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

232

Amino Acids

26.15

Weight (kDa)

5.89

Isoelectric Point (pI)

59.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 592
AatII GACGTC 1 cut(s) 71
AccI GTMKAC 2 cut(s) 65, 437
AciI CCGC 4 cut(s) 24, 27, 524, 531
AclWI GGATC 1 cut(s) 567
AcuI CTGAAG 1 cut(s) 202
AcyI GRCGYC 2 cut(s) 68, 290
AfaI GTAC 3 cut(s) 260, 620, 650
AfiI CCNNNNNNNGG 1 cut(s) 690
AgsI TTSAA 2 cut(s) 241, 275
AjiI CACGTC 1 cut(s) 635
AjnI CCWGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 1 cut(s) 668
AluBI AGCT 4 cut(s) 222, 416, 467, 476
AluI AGCT 4 cut(s) 222, 416, 467, 476
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 4 cut(s) 211, 268, 404, 578
AlwI GGATC 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 358
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 3 cut(s) 169, 222, 464
Asp700I GAANNNNTTC 2 cut(s) 318, 367
AspLEI GCGC 2 cut(s) 384, 496
AsuC2I CCSGG 2 cut(s) 359, 360
AsuHPI GGTGA 1 cut(s) 583
AsuII TTCGAA 1 cut(s) 423
AvaI CYCGRG 1 cut(s) 358
BanII GRGCYC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 156, 209, 476
BccI CCATC 3 cut(s) 218, 247, 597
BceAI ACGGC 3 cut(s) 27, 102, 369
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 1 cut(s) 191
BciVI GTATCC 1 cut(s) 172
BcnI CCSGG 2 cut(s) 359, 360
BcoDI GTCTC 4 cut(s) 211, 268, 404, 578
BfaI CTAG 1 cut(s) 672
BfuI GTATCC 1 cut(s) 172
BglII AGATCT 1 cut(s) 277
BisI GCNGC 5 cut(s) 25, 170, 223, 465, 531
BlsI GCNGC 5 cut(s) 26, 171, 224, 466, 532
Bme1390I CCNGG 3 cut(s) 191, 359, 360
BmeT110I CYCGRG 1 cut(s) 358
BmgBI CACGTC 1 cut(s) 635
BmrFI CCNGG 3 cut(s) 191, 359, 360
BmsI GCATC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 311
BplI GAGNNNNNCTC 2 cut(s) 248, 280
Bpu14I TTCGAA 1 cut(s) 423
BpuMI CCSGG 2 cut(s) 359, 360
BsaHI GRCGYC 2 cut(s) 68, 290
BsaI GGTCTC 2 cut(s) 404, 578
BsaJI CCNNGG 6 cut(s) 39, 226, 267, 357, 358, 684
BsaWI WCCGGW 1 cut(s) 637
Bsc4I CCNNNNNNNGG 1 cut(s) 690
Bse1I ACTGG 1 cut(s) 695
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 6 cut(s) 39, 226, 267, 357, 358, 684
BseGI GGATG 2 cut(s) 210, 621
BseLI CCNNNNNNNGG 1 cut(s) 690
BseNI ACTGG 1 cut(s) 695
BseRI GAGGAG 2 cut(s) 69, 122
BseXI GCAGC 3 cut(s) 156, 209, 476
BshFI GGCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 358
BsiSI CCGG 4 cut(s) 359, 391, 534, 638
BslI CCNNNNNNNGG 1 cut(s) 690
BsmAI GTCTC 4 cut(s) 211, 268, 404, 578
BsmBI CGTCTC 2 cut(s) 211, 268
BsnI GGCC 1 cut(s) 231
Bso31I GGTCTC 2 cut(s) 404, 578
BsoBI CYCGRG 1 cut(s) 358
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 2 cut(s) 277, 559
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 4 cut(s) 24, 27, 524, 531
BspANI GGCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 567
BspQI GCTCTTC 2 cut(s) 28, 552
BspT104I TTCGAA 1 cut(s) 423
BspTNI GGTCTC 2 cut(s) 404, 578
BsrI ACTGG 1 cut(s) 695
BssECI CCNNGG 6 cut(s) 39, 226, 267, 357, 358, 684
BssMI GATC 2 cut(s) 277, 559
BssNI GRCGYC 2 cut(s) 68, 290
BssT1I CCWWGG 4 cut(s) 39, 226, 267, 684
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 3 cut(s) 47, 349, 506
Bst6I CTCTTC 4 cut(s) 28, 221, 552, 576
BstACI GRCGYC 2 cut(s) 68, 290
BstAPI GCANNNNNTGC 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 423
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 210, 621
BstHHI GCGC 2 cut(s) 384, 496
BstKTI GATC 2 cut(s) 280, 562
BstMAI GTCTC 4 cut(s) 211, 268, 404, 578
BstMBI GATC 2 cut(s) 277, 559
BstMWI GCNNNNNNNGC 4 cut(s) 169, 228, 473, 530
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 3 cut(s) 189, 357, 358
BstV1I GCAGC 3 cut(s) 156, 209, 476
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 39
BtrI CACGTC 1 cut(s) 635
BtsCI GGATG 2 cut(s) 210, 621
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 19
CfoI GCGC 2 cut(s) 384, 496
Cfr9I CCCGGG 1 cut(s) 358
CseI GACGC 1 cut(s) 279
Csp6I GTAC 3 cut(s) 259, 619, 649
CviAII CATG 1 cut(s) 40
CviQI GTAC 3 cut(s) 259, 619, 649
DpnI GATC 2 cut(s) 279, 561
DpnII GATC 2 cut(s) 277, 559
DrdI GACNNNNNNGTC 1 cut(s) 592
DseDI GACNNNNNNGTC 1 cut(s) 592
Eam1104I CTCTTC 4 cut(s) 28, 221, 552, 576
EarI CTCTTC 4 cut(s) 28, 221, 552, 576
EciI GGCGGA 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 416
Eco130I CCWWGG 4 cut(s) 39, 226, 267, 684
Eco24I GRGCYC 1 cut(s) 418
Eco31I GGTCTC 2 cut(s) 404, 578
Eco53kI GAGCTC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 4 cut(s) 39, 226, 267, 684
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 4 cut(s) 39, 226, 267, 684
Esp3I CGTCTC 2 cut(s) 211, 268
FaeI CATG 1 cut(s) 43
FaiI YATR 7 cut(s) 41, 50, 141, 480, 499, 543, 664
FatI CATG 1 cut(s) 39
FblI GTMKAC 2 cut(s) 65, 437
Fnu4HI GCNGC 5 cut(s) 25, 170, 223, 465, 531
FokI GGATG 2 cut(s) 197, 608
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 5 cut(s) 25, 170, 223, 465, 531
FspBI CTAG 1 cut(s) 672
GlaI GCGC 2 cut(s) 383, 495
GluI GCNGC 5 cut(s) 25, 170, 223, 465, 531
HaeIII GGCC 1 cut(s) 231
HapII CCGG 4 cut(s) 359, 391, 534, 638
HgaI GACGC 1 cut(s) 279
HhaI GCGC 2 cut(s) 384, 496
Hin1I GRCGYC 2 cut(s) 68, 290
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 2 cut(s) 382, 494
HinP1I GCGC 2 cut(s) 382, 494
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 2 cut(s) 62, 574
HpaII CCGG 4 cut(s) 359, 391, 534, 638
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 2 cut(s) 66, 438
Hpy188I TCNGA 2 cut(s) 84, 413
Hpy188III TCNNGA 4 cut(s) 323, 401, 517, 578
Hpy8I GTNNAC 2 cut(s) 66, 438
Hpy99I CGWCG 2 cut(s) 70, 73
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 3 cut(s) 47, 349, 506
HpyCH4IV ACGT 3 cut(s) 68, 261, 634
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 228, 473, 530
HpySE526I ACGT 3 cut(s) 68, 261, 634
Hsp92I GRCGYC 2 cut(s) 68, 290
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 2 cut(s) 382, 494
Kzo9I GATC 2 cut(s) 277, 559
LguI GCTCTTC 2 cut(s) 28, 552
Lsp1109I GCAGC 3 cut(s) 156, 209, 476
LweI GCATC 1 cut(s) 63
MaeI CTAG 1 cut(s) 672
MaeII ACGT 3 cut(s) 68, 261, 634
MalI GATC 2 cut(s) 279, 561
MboI GATC 2 cut(s) 277, 559
MboII GAAGA 9 cut(s) 42, 45, 208, 287, 311, 539, 593, 616, 619
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 1 cut(s) 428
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 488
MroXI GAANNNNTTC 2 cut(s) 318, 367
MseI TTAA 1 cut(s) 455
MspA1I CMGCKG 2 cut(s) 222, 524
MspI CCGG 4 cut(s) 359, 391, 534, 638
MspR9I CCNGG 3 cut(s) 191, 359, 360
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 169, 228, 473, 530
NciI CCSGG 2 cut(s) 359, 360
NcoI CCATGG 1 cut(s) 39
NdeII GATC 2 cut(s) 277, 559
NlaIII CATG 1 cut(s) 43
NmeAIII GCCGAG 1 cut(s) 274
NspV TTCGAA 1 cut(s) 423
PciSI GCTCTTC 2 cut(s) 28, 552
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PdmI GAANNNNTTC 2 cut(s) 318, 367
PfeI GAWTC 1 cut(s) 574
PflFI GACNNNGTC 1 cut(s) 407
PkrI GCNGC 5 cut(s) 26, 171, 224, 466, 532
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PsuI RGATCY 1 cut(s) 277
PsyI GACNNNGTC 1 cut(s) 407
PvuII CAGCTG 1 cut(s) 222
RsaI GTAC 3 cut(s) 260, 620, 650
RsaNI GTAC 3 cut(s) 259, 619, 649
SacI GAGCTC 1 cut(s) 418
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 2 cut(s) 28, 552
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 5 cut(s) 25, 170, 223, 465, 531
Sau3AI GATC 2 cut(s) 277, 559
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 3 cut(s) 191, 359, 360
SduI GDGCHC 1 cut(s) 418
SfaNI GCATC 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 423
SmaI CCCGGG 1 cut(s) 360
Sse9I AATT 1 cut(s) 428
SsiI CCGC 4 cut(s) 24, 27, 524, 531
SspMI CTAG 1 cut(s) 672
SstI GAGCTC 1 cut(s) 418
StyD4I CCNGG 3 cut(s) 189, 357, 358
StyI CCWWGG 4 cut(s) 39, 226, 267, 684
TaaI ACNGT 3 cut(s) 47, 349, 506
TaiI ACGT 3 cut(s) 71, 264, 637
TaqI TCGA 7 cut(s) 65, 71, 402, 423, 579, 645, 654
TasI AATT 1 cut(s) 428
TatI WGTACW 1 cut(s) 648
TauI GCSGC 2 cut(s) 27, 533
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 1 cut(s) 26
TseI GCWGC 3 cut(s) 169, 222, 464
TspDTI ATGAA 1 cut(s) 626
TspGWI ACGGA 1 cut(s) 540
TspMI CCCGGG 1 cut(s) 358
TspRI CASTG 1 cut(s) 26
Tth111I GACNNNGTC 1 cut(s) 407
XcmI CCANNNNNNNNNTGG 2 cut(s) 46, 504
XmaI CCCGGG 1 cut(s) 358
XmiI GTMKAC 2 cut(s) 65, 437
XmnI GAANNNNTTC 2 cut(s) 318, 367
XspI CTAG 1 cut(s) 672
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.