Rroxscaffold_5G00376670

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011497
Physical Location & Seq
Forward (+)
57329864 .. 57332177
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376670.1

Sequence Viewer

Length: 678 bp
ATGATTCTAGGGTTGAAATACAGGGCAGCCATTGACGGTATGGCAGAGATGTCGATAGACGACGCCACGTCACCGACGCCTCTGTCCGCCATAGTCGAGGCCTTTGAGAAACTCGCCAAGATTCTGGATTCCCAAGAAGAAGAAGGTGATCTGCATTTGGATACGTTCTGCCAGGCTTGCTCCCTCGTCTCTATTCTCTTCAGTTGCCTCGGCCTCGCTTTCAAGTTCGCCGAGATGGAGTACGTCTCAAAGGTTGATAATCTCTTGCAAGCATCAAAGACTTACGATACTTTAGTACACATACTTGATTTTGATGTTGCAAATGACACTGTCAAATCACCAGGCAGCCGTTCACGCAACTTACGCCGAGTTAGGCAGGGTCTTGACCTCATCAGAGCTATATTTGAAAACTTTTTGGCGACAGATGACAACTCTTTAAGGGAGGCAGCTTCAACAGCTTATGCCCAAGTCTGTGCGCCATACCACACTTGGGCAGTCAGGACAGCAGTTGCTGCTGGTATGTATGCTCTTCCATCAAGGGATCAACTTCTGATGAGTCTCAAAGAAACCCATGAATCGGCAGAGATTAAAATGAAACAGTACATCCGTGCCTCGCTTCCAGTTATCCAGTACATTGATAAGCTGTACCTTTCTAGAGATATCGTTTTGGACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

225

Amino Acids

25.18

Weight (kDa)

5.03

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 52 - 188 6.4e-36 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 82
AciI CCGC 1 cut(s) 87
AclWI GGATC 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 184
AcyI GRCGYC 2 cut(s) 63, 77
AfaI GTAC 5 cut(s) 242, 297, 602, 632, 647
AfiI CCNNNNNNNGG 2 cut(s) 490, 577
AgsI TTSAA 4 cut(s) 16, 223, 407, 453
AhdI GACNNNNNGTC 1 cut(s) 67
AjiI CACGTC 1 cut(s) 69
AjnI CCWGG 2 cut(s) 171, 340
AluBI AGCT 4 cut(s) 398, 449, 458, 643
AluI AGCT 4 cut(s) 398, 449, 458, 643
Alw26I GTCTC 3 cut(s) 193, 250, 563
AlwI GGATC 1 cut(s) 549
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 2 cut(s) 99, 211
ApeKI GCWGC 4 cut(s) 26, 345, 446, 512
AspLEI GCGC 1 cut(s) 478
AsuHPI GGTGA 3 cut(s) 63, 158, 330
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BbvI GCAGC 4 cut(s) 38, 357, 458, 499
BccI CCATC 2 cut(s) 229, 541
BceAI ACGGC 1 cut(s) 333
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BciT130I CCWGG 2 cut(s) 173, 342
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 3 cut(s) 193, 250, 563
BfaI CTAG 2 cut(s) 8, 654
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 4 cut(s) 27, 346, 447, 513
BlsI GCNGC 4 cut(s) 28, 347, 448, 514
Bme1390I CCNGG 2 cut(s) 173, 342
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgBI CACGTC 1 cut(s) 69
BmrFI CCNGG 2 cut(s) 173, 342
BmsI GCATC 1 cut(s) 281
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BsaHI GRCGYC 2 cut(s) 63, 77
BsaJI CCNNGG 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 490, 577
Bse1I ACTGG 3 cut(s) 620, 628, 677
BseBI CCWGG 2 cut(s) 173, 342
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 603
BseLI CCNNNNNNNGG 2 cut(s) 490, 577
BseNI ACTGG 3 cut(s) 620, 628, 677
BseXI GCAGC 4 cut(s) 38, 357, 458, 499
BshFI GGCC 2 cut(s) 101, 213
BslI CCNNNNNNNGG 2 cut(s) 490, 577
BsmAI GTCTC 3 cut(s) 193, 250, 563
BsmBI CGTCTC 2 cut(s) 193, 250
BsnI GGCC 2 cut(s) 101, 213
Bsp143I GATC 2 cut(s) 148, 541
BspACI CCGC 1 cut(s) 87
BspANI GGCC 2 cut(s) 101, 213
BspPI GGATC 1 cut(s) 549
BspQI GCTCTTC 1 cut(s) 534
BsrI ACTGG 3 cut(s) 620, 628, 677
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 2 cut(s) 148, 541
BssNI GRCGYC 2 cut(s) 63, 77
Bst2UI CCWGG 2 cut(s) 173, 342
Bst4CI ACNGT 3 cut(s) 38, 331, 600
Bst6I CTCTTC 2 cut(s) 203, 534
BstACI GRCGYC 2 cut(s) 63, 77
BstAPI GCANNNNNTGC 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 178, 270
BstF5I GGATG 1 cut(s) 603
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 2 cut(s) 151, 544
BstMAI GTCTC 3 cut(s) 193, 250, 563
BstMBI GATC 2 cut(s) 148, 541
BstMWI GCNNNNNNNGC 5 cut(s) 177, 354, 363, 455, 512
BstNI CCWGG 2 cut(s) 173, 342
BstSCI CCNGG 2 cut(s) 171, 340
BstV1I GCAGC 4 cut(s) 38, 357, 458, 499
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 2 cut(s) 101, 213
BtrI CACGTC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 603
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 2 cut(s) 178, 270
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 1 cut(s) 478
CseI GACGC 2 cut(s) 71, 85
Csp6I GTAC 5 cut(s) 241, 296, 601, 631, 646
CviAII CATG 1 cut(s) 572
CviJI RGCY 9 cut(s) 29, 101, 176, 213, 348, 398, 449, 458, 643
CviKI_1 RGCY 9 cut(s) 29, 101, 176, 213, 348, 398, 449, 458, 643
CviQI GTAC 5 cut(s) 241, 296, 601, 631, 646
DpnI GATC 2 cut(s) 150, 543
DpnII GATC 2 cut(s) 148, 541
DrdI GACNNNNNNGTC 1 cut(s) 82
DriI GACNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 203, 534
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 2 cut(s) 203, 534
EciI GGCGGA 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 101
Eco32I GATATC 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 171, 340
EcoRV GATATC 1 cut(s) 661
Esp3I CGTCTC 2 cut(s) 193, 250
FaeI CATG 1 cut(s) 575
FaiI YATR 9 cut(s) 41, 92, 302, 401, 462, 481, 521, 525, 573
FatI CATG 1 cut(s) 571
Fnu4HI GCNGC 4 cut(s) 27, 346, 447, 513
FokI GGATG 1 cut(s) 590
Fsp4HI GCNGC 4 cut(s) 27, 346, 447, 513
FspBI CTAG 2 cut(s) 8, 654
GlaI GCGC 1 cut(s) 477
GluI GCNGC 4 cut(s) 27, 346, 447, 513
HaeIII GGCC 2 cut(s) 101, 213
HgaI GACGC 2 cut(s) 71, 85
HhaI GCGC 1 cut(s) 478
Hin1I GRCGYC 2 cut(s) 63, 77
Hin1II CATG 1 cut(s) 575
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HinfI GANTC 5 cut(s) 4, 121, 128, 556, 575
HphI GGTGA 3 cut(s) 63, 158, 330
Hpy166II GTNNAC 2 cut(s) 298, 353
Hpy188I TCNGA 2 cut(s) 395, 552
Hpy188III TCNNGA 4 cut(s) 125, 383, 499, 654
Hpy8I GTNNAC 2 cut(s) 298, 353
Hpy99I CGWCG 2 cut(s) 65, 79
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 3 cut(s) 38, 331, 600
HpyCH4IV ACGT 3 cut(s) 68, 164, 243
HpyCH4V TGCA 3 cut(s) 154, 268, 320
HpyF10VI GCNNNNNNNGC 5 cut(s) 177, 354, 363, 455, 512
HpySE526I ACGT 3 cut(s) 68, 164, 243
Hsp92I GRCGYC 2 cut(s) 63, 77
Hsp92II CATG 1 cut(s) 575
HspAI GCGC 1 cut(s) 476
Kzo9I GATC 2 cut(s) 148, 541
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 185
Lsp1109I GCAGC 4 cut(s) 38, 357, 458, 499
LweI GCATC 1 cut(s) 281
MaeI CTAG 2 cut(s) 8, 654
MaeII ACGT 3 cut(s) 68, 164, 243
MaeIII GTNAC 1 cut(s) 69
MalI GATC 2 cut(s) 150, 543
MboI GATC 2 cut(s) 148, 541
MboII GAAGA 4 cut(s) 149, 152, 190, 521
MlyI GAGTC 1 cut(s) 565
MnlI CCTC 8 cut(s) 90, 91, 194, 218, 224, 398, 436, 622
MseI TTAA 2 cut(s) 437, 588
MspR9I CCNGG 2 cut(s) 173, 342
MvaI CCWGG 2 cut(s) 173, 342
MwoI GCNNNNNNNGC 5 cut(s) 177, 354, 363, 455, 512
NdeII GATC 2 cut(s) 148, 541
NlaIII CATG 1 cut(s) 575
NmeAIII GCCGAG 3 cut(s) 189, 256, 392
NmuCI GTSAC 1 cut(s) 69
PceI AGGCCT 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 534
PfeI GAWTC 4 cut(s) 4, 121, 128, 575
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 4 cut(s) 28, 347, 448, 514
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
Psp6I CCWGG 2 cut(s) 171, 340
PspGI CCWGG 2 cut(s) 171, 340
PstNI CAGNNNCTG 1 cut(s) 512
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 5 cut(s) 242, 297, 602, 632, 647
RsaNI GTAC 5 cut(s) 241, 296, 601, 631, 646
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 2 cut(s) 437, 588
SatI GCNGC 4 cut(s) 27, 346, 447, 513
Sau3AI GATC 2 cut(s) 148, 541
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 2 cut(s) 173, 342
SfaNI GCATC 1 cut(s) 281
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 1 cut(s) 87
SspMI CTAG 2 cut(s) 8, 654
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 2 cut(s) 171, 340
TaaI ACNGT 3 cut(s) 38, 331, 600
TaiI ACGT 3 cut(s) 71, 167, 246
TaqI TCGA 2 cut(s) 53, 96
TatI WGTACW 3 cut(s) 295, 600, 630
TfiI GAWTC 4 cut(s) 4, 121, 128, 575
Tru1I TTAA 2 cut(s) 437, 588
Tru9I TTAA 2 cut(s) 437, 588
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 4 cut(s) 26, 345, 446, 512
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 2 cut(s) 588, 608
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 1 cut(s) 334
Tth111I GACNNNGTC 1 cut(s) 329
XbaI TCTAGA 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 2 cut(s) 37, 486
XspI CTAG 2 cut(s) 8, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.