Rh4BG349000

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011497
Physical Location & Seq
Forward (+)
51117599 .. 51120371
2773 bp
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UTR
Exon/CDS
Intron
Rh4BG349000.1

Sequence Viewer

Length: 570 bp
ATGATTCTAGGGTTGAAATACAGGGCAGCCATTGACGGTATGATAGACGACGCCACGTCACCGACGCCTCTGTCCGCCATAGTCGAGGCCTTTGACAAACTCGCCAAGATTCTGGATTCCCAAGAAGAAGAAGGTGATCTGCATTTGGATACGTTCTGCCAGGCTTGCTCTCTCGTCTCTATTCTCTTCAGTTGCCTCGGCCTCGCTTTCAAGTTCGCCGAGATGGAGTACGTCTCAAAGGTTGATAATCTCTTGCAAGCATCAAAGACTTACGATACTTTAGTGCACATACTTGATTTTGATGTTGCAAATGACACTGTTAAATCACCAGGCAGCCGTTCACGCAACTTACGCCGAGTTAGGCAGGGTCTTGACCTCATCAGAGCTATATTTGAAAACTTTTTGGCGACAGATGACAACTCTTTAAGGGAGGCAGCTTCAACAGCTTATGCCCAAGTTTGTGCGCCATACCACACTTGGGCAGTCAGGACAGCAGTTGCTGCTGGTATGTATGCTCTTCCGTCAAGGGATCAACTTCTGATGAGTCTCAAAGAAACCCGTAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

189

Amino Acids

20.98

Weight (kDa)

5.2

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 48 - 184 3.8e-36 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 537
AcuI CTGAAG 1 cut(s) 172
AcyI GRCGYC 2 cut(s) 51, 65
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 4 cut(s) 16, 211, 395, 441
AhdI GACNNNNNGTC 1 cut(s) 55
AjiI CACGTC 1 cut(s) 57
AjnI CCWGG 2 cut(s) 159, 328
AluBI AGCT 3 cut(s) 386, 437, 446
AluI AGCT 3 cut(s) 386, 437, 446
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 3 cut(s) 181, 238, 551
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 1 cut(s) 537
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 2 cut(s) 87, 199
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 4 cut(s) 26, 333, 434, 500
AspLEI GCGC 1 cut(s) 466
AsuHPI GGTGA 3 cut(s) 51, 146, 318
BaeGI GKGCMC 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 267, 300
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 4 cut(s) 38, 345, 446, 487
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 2 cut(s) 161, 330
BciVI GTATCC 1 cut(s) 142
BcoDI GTCTC 3 cut(s) 181, 238, 551
BfaI CTAG 1 cut(s) 8
BfuI GTATCC 1 cut(s) 142
BisI GCNGC 4 cut(s) 27, 334, 435, 501
BlsI GCNGC 4 cut(s) 28, 335, 436, 502
Bme1390I CCNGG 2 cut(s) 161, 330
BmeRI GACNNNNNGTC 1 cut(s) 55
BmgBI CACGTC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 161, 330
BmsI GCATC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BsaHI GRCGYC 2 cut(s) 51, 65
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 478
BseBI CCWGG 2 cut(s) 161, 330
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 478
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 4 cut(s) 38, 345, 446, 487
BshFI GGCC 2 cut(s) 89, 201
BsiHKAI GWGCWC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 3 cut(s) 181, 238, 551
BsmBI CGTCTC 2 cut(s) 181, 238
BsnI GGCC 2 cut(s) 89, 201
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 136, 529
BspACI CCGC 1 cut(s) 75
BspANI GGCC 2 cut(s) 89, 201
BspPI GGATC 1 cut(s) 537
BspQI GCTCTTC 1 cut(s) 522
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 136, 529
BssNI GRCGYC 2 cut(s) 51, 65
Bst2UI CCWGG 2 cut(s) 161, 330
Bst4CI ACNGT 2 cut(s) 38, 319
Bst6I CTCTTC 2 cut(s) 191, 522
BstACI GRCGYC 2 cut(s) 51, 65
BstAPI GCANNNNNTGC 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 166, 258
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 2 cut(s) 139, 532
BstMAI GTCTC 3 cut(s) 181, 238, 551
BstMBI GATC 2 cut(s) 136, 529
BstMWI GCNNNNNNNGC 5 cut(s) 165, 342, 351, 443, 500
BstNI CCWGG 2 cut(s) 161, 330
BstSCI CCNGG 2 cut(s) 159, 328
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 4 cut(s) 38, 345, 446, 487
BstXI CCANNNNNNTGG 1 cut(s) 112
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 89, 201
BtrI CACGTC 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 166, 258
CaiI CAGNNNCTG 1 cut(s) 500
CfoI GCGC 1 cut(s) 466
CseI GACGC 2 cut(s) 59, 73
Csp6I GTAC 1 cut(s) 229
CviJI RGCY 8 cut(s) 29, 89, 164, 201, 336, 386, 437, 446
CviKI_1 RGCY 8 cut(s) 29, 89, 164, 201, 336, 386, 437, 446
CviQI GTAC 1 cut(s) 229
DpnI GATC 2 cut(s) 138, 531
DpnII GATC 2 cut(s) 136, 529
DrdI GACNNNNNNGTC 1 cut(s) 70
DriI GACNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 191, 522
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 2 cut(s) 191, 522
EciI GGCGGA 1 cut(s) 64
Eco147I AGGCCT 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 159, 328
Esp3I CGTCTC 2 cut(s) 181, 238
FaiI YATR 8 cut(s) 41, 80, 290, 389, 450, 469, 509, 513
Fnu4HI GCNGC 4 cut(s) 27, 334, 435, 501
Fsp4HI GCNGC 4 cut(s) 27, 334, 435, 501
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 465
GluI GCNGC 4 cut(s) 27, 334, 435, 501
HaeIII GGCC 2 cut(s) 89, 201
HgaI GACGC 2 cut(s) 59, 73
HhaI GCGC 1 cut(s) 466
Hin1I GRCGYC 2 cut(s) 51, 65
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HinfI GANTC 4 cut(s) 4, 109, 116, 544
HphI GGTGA 3 cut(s) 51, 146, 318
Hpy166II GTNNAC 2 cut(s) 286, 341
Hpy188I TCNGA 2 cut(s) 383, 540
Hpy188III TCNNGA 3 cut(s) 113, 371, 487
Hpy8I GTNNAC 2 cut(s) 286, 341
Hpy99I CGWCG 2 cut(s) 53, 67
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 38, 319
HpyCH4IV ACGT 3 cut(s) 56, 152, 231
HpyCH4V TGCA 4 cut(s) 142, 256, 286, 308
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 342, 351, 443, 500
HpySE526I ACGT 3 cut(s) 56, 152, 231
Hsp92I GRCGYC 2 cut(s) 51, 65
HspAI GCGC 1 cut(s) 464
Kzo9I GATC 2 cut(s) 136, 529
LguI GCTCTTC 1 cut(s) 522
LpnPI CCDG 9 cut(s) 7, 98, 146, 173, 315, 342, 350, 472, 489
Lsp1109I GCAGC 4 cut(s) 38, 345, 446, 487
LweI GCATC 1 cut(s) 269
MaeI CTAG 1 cut(s) 8
MaeII ACGT 3 cut(s) 56, 152, 231
MaeIII GTNAC 1 cut(s) 57
MalI GATC 2 cut(s) 138, 531
MboI GATC 2 cut(s) 136, 529
MboII GAAGA 4 cut(s) 137, 140, 178, 509
MhlI GDGCHC 1 cut(s) 288
MlyI GAGTC 1 cut(s) 553
MnlI CCTC 6 cut(s) 78, 79, 206, 212, 386, 424
MseI TTAA 3 cut(s) 321, 425, 568
MspR9I CCNGG 2 cut(s) 161, 330
MvaI CCWGG 2 cut(s) 161, 330
MwoI GCNNNNNNNGC 5 cut(s) 165, 342, 351, 443, 500
NdeII GATC 2 cut(s) 136, 529
NmeAIII GCCGAG 3 cut(s) 177, 244, 380
NmuCI GTSAC 1 cut(s) 57
PceI AGGCCT 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 522
PfeI GAWTC 3 cut(s) 4, 109, 116
PkrI GCNGC 4 cut(s) 28, 335, 436, 502
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 159, 328
PspGI CCWGG 2 cut(s) 159, 328
PstNI CAGNNNCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 3 cut(s) 321, 425, 568
SatI GCNGC 4 cut(s) 27, 334, 435, 501
Sau3AI GATC 2 cut(s) 136, 529
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 2 cut(s) 161, 330
SduI GDGCHC 1 cut(s) 288
SetI ASST 9 cut(s) 59, 136, 155, 234, 243, 378, 388, 439, 448
SfaNI GCATC 1 cut(s) 269
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 8
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 159, 328
TaaI ACNGT 2 cut(s) 38, 319
TaiI ACGT 3 cut(s) 59, 155, 234
TaqI TCGA 1 cut(s) 84
TfiI GAWTC 3 cut(s) 4, 109, 116
Tru1I TTAA 3 cut(s) 321, 425, 568
Tru9I TTAA 3 cut(s) 321, 425, 568
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 4 cut(s) 26, 333, 434, 500
Tsp45I GTSAC 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 1 cut(s) 322
VneI GTGCAC 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 474
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.