Rh4DG343200

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011497
Physical Location & Seq
Forward (+)
56581935 .. 56583744
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG343200.1

Sequence Viewer

Length: 630 bp
ATGTCGATAGACGACGCCACGTCACCGACGCCTCTGTCCGCCATAGTCGAGGCCTTTGAGAAACTCGCCAAGATTCTGGATTCCCAAGAAGAAGAAGGTGATCTGCATTTGGATACGTTCTGCCAGGCTTGCTCTCTCGTCTCTATTCTCTTCAGTTGCCTCGGCCTCGCTTTCAAGTTCGCCGAGATGGAGTACGTCTCAAAGGTTGATAATCTCTTGCAAGCATCAAAGACTTACGATACTTTAGTACACATACTTGATTTTGATGTTGCAAATGACACAGTCAAATCACCAGGCAGCCGTTCACGCAACTTACGCCGAGTTAGGCAGGGTCTTGACCTCATCAGAGCTATATTTGAAAACTTTTTGGCGACAGATGACAACTCTTTAAGGGAGGCAGCTTCAACAGCTTATGCCCAAGTTTGTGCGCCATACCACACTTGGGCAGTCAGGACAGCAGTTGCTGCTGGTATGTATGCTCTTCCGTCAAGGGATCAACTTCTGATGAGTCTCAAAGAAACCCATGAATCGGCAGAGATTAAAATGAAACAGTACATCCGTGTCTCGCTTCCAGTTATCCAGTACATTGATAAGCTGTACCTTTCTAGAGATATCGTTTTGGACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

209

Amino Acids

23.48

Weight (kDa)

5.0

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 36 - 172 5.1e-36 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 501
AcuI CTGAAG 1 cut(s) 136
AcyI GRCGYC 2 cut(s) 15, 29
AfaI GTAC 5 cut(s) 194, 249, 554, 584, 599
AfiI CCNNNNNNNGG 2 cut(s) 442, 529
AgsI TTSAA 3 cut(s) 175, 359, 405
AhdI GACNNNNNGTC 1 cut(s) 19
AjiI CACGTC 1 cut(s) 21
AjnI CCWGG 2 cut(s) 123, 292
AluBI AGCT 4 cut(s) 350, 401, 410, 595
AluI AGCT 4 cut(s) 350, 401, 410, 595
Alw26I GTCTC 4 cut(s) 145, 202, 515, 568
AlwI GGATC 1 cut(s) 501
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 2 cut(s) 51, 163
ApeKI GCWGC 3 cut(s) 297, 398, 464
AspLEI GCGC 1 cut(s) 430
AsuHPI GGTGA 3 cut(s) 15, 110, 282
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BbvI GCAGC 3 cut(s) 309, 410, 451
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 2 cut(s) 125, 294
BciVI GTATCC 1 cut(s) 106
BcoDI GTCTC 4 cut(s) 145, 202, 515, 568
BfaI CTAG 1 cut(s) 606
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 3 cut(s) 298, 399, 465
BlsI GCNGC 3 cut(s) 299, 400, 466
Bme1390I CCNGG 2 cut(s) 125, 294
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgBI CACGTC 1 cut(s) 21
BmrFI CCNGG 2 cut(s) 125, 294
BmsI GCATC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BsaHI GRCGYC 2 cut(s) 15, 29
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 529
Bse1I ACTGG 3 cut(s) 572, 580, 629
BseBI CCWGG 2 cut(s) 125, 294
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 555
BseLI CCNNNNNNNGG 2 cut(s) 442, 529
BseNI ACTGG 3 cut(s) 572, 580, 629
BseXI GCAGC 3 cut(s) 309, 410, 451
BshFI GGCC 2 cut(s) 53, 165
BslI CCNNNNNNNGG 2 cut(s) 442, 529
BsmAI GTCTC 4 cut(s) 145, 202, 515, 568
BsmBI CGTCTC 2 cut(s) 145, 202
BsnI GGCC 2 cut(s) 53, 165
Bsp143I GATC 2 cut(s) 100, 493
BspACI CCGC 1 cut(s) 39
BspANI GGCC 2 cut(s) 53, 165
BspPI GGATC 1 cut(s) 501
BspQI GCTCTTC 1 cut(s) 486
BsrI ACTGG 3 cut(s) 572, 580, 629
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 100, 493
BssNI GRCGYC 2 cut(s) 15, 29
Bst2UI CCWGG 2 cut(s) 125, 294
Bst4CI ACNGT 2 cut(s) 283, 552
Bst6I CTCTTC 2 cut(s) 155, 486
BstACI GRCGYC 2 cut(s) 15, 29
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 130, 222
BstF5I GGATG 1 cut(s) 555
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 2 cut(s) 103, 496
BstMAI GTCTC 4 cut(s) 145, 202, 515, 568
BstMBI GATC 2 cut(s) 100, 493
BstMWI GCNNNNNNNGC 5 cut(s) 129, 306, 315, 407, 464
BstNI CCWGG 2 cut(s) 125, 294
BstSCI CCNGG 2 cut(s) 123, 292
BstV1I GCAGC 3 cut(s) 309, 410, 451
BstXI CCANNNNNNTGG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 53, 165
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 555
Cac8I GCNNGC 2 cut(s) 130, 222
CaiI CAGNNNCTG 1 cut(s) 464
CfoI GCGC 1 cut(s) 430
CseI GACGC 2 cut(s) 23, 37
Csp6I GTAC 5 cut(s) 193, 248, 553, 583, 598
CviAII CATG 1 cut(s) 524
CviJI RGCY 8 cut(s) 53, 128, 165, 300, 350, 401, 410, 595
CviKI_1 RGCY 8 cut(s) 53, 128, 165, 300, 350, 401, 410, 595
CviQI GTAC 5 cut(s) 193, 248, 553, 583, 598
DpnI GATC 2 cut(s) 102, 495
DpnII GATC 2 cut(s) 100, 493
DrdI GACNNNNNNGTC 1 cut(s) 34
DriI GACNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 155, 486
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 2 cut(s) 155, 486
EciI GGCGGA 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 53
Eco32I GATATC 1 cut(s) 613
Eco57I CTGAAG 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 123, 292
EcoRV GATATC 1 cut(s) 613
Esp3I CGTCTC 2 cut(s) 145, 202
FaeI CATG 1 cut(s) 527
FaiI YATR 8 cut(s) 44, 254, 353, 414, 433, 473, 477, 525
FatI CATG 1 cut(s) 523
Fnu4HI GCNGC 3 cut(s) 298, 399, 465
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 3 cut(s) 298, 399, 465
FspBI CTAG 1 cut(s) 606
GlaI GCGC 1 cut(s) 429
GluI GCNGC 3 cut(s) 298, 399, 465
HaeIII GGCC 2 cut(s) 53, 165
HgaI GACGC 2 cut(s) 23, 37
HhaI GCGC 1 cut(s) 430
Hin1I GRCGYC 2 cut(s) 15, 29
Hin1II CATG 1 cut(s) 527
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 4 cut(s) 73, 80, 508, 527
HphI GGTGA 3 cut(s) 15, 110, 282
Hpy166II GTNNAC 2 cut(s) 250, 305
Hpy188I TCNGA 2 cut(s) 347, 504
Hpy188III TCNNGA 4 cut(s) 77, 335, 451, 606
Hpy8I GTNNAC 2 cut(s) 250, 305
Hpy99I CGWCG 2 cut(s) 17, 31
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 283, 552
HpyCH4IV ACGT 3 cut(s) 20, 116, 195
HpyCH4V TGCA 3 cut(s) 106, 220, 272
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 306, 315, 407, 464
HpySE526I ACGT 3 cut(s) 20, 116, 195
Hsp92I GRCGYC 2 cut(s) 15, 29
Hsp92II CATG 1 cut(s) 527
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 2 cut(s) 100, 493
LguI GCTCTTC 1 cut(s) 486
Lsp1109I GCAGC 3 cut(s) 309, 410, 451
LweI GCATC 1 cut(s) 233
MaeI CTAG 1 cut(s) 606
MaeII ACGT 3 cut(s) 20, 116, 195
MaeIII GTNAC 1 cut(s) 21
MalI GATC 2 cut(s) 102, 495
MboI GATC 2 cut(s) 100, 493
MboII GAAGA 4 cut(s) 101, 104, 142, 473
MlyI GAGTC 1 cut(s) 517
MnlI CCTC 6 cut(s) 42, 43, 170, 176, 350, 388
MseI TTAA 2 cut(s) 389, 540
MspR9I CCNGG 2 cut(s) 125, 294
MvaI CCWGG 2 cut(s) 125, 294
MwoI GCNNNNNNNGC 5 cut(s) 129, 306, 315, 407, 464
NdeII GATC 2 cut(s) 100, 493
NlaIII CATG 1 cut(s) 527
NmeAIII GCCGAG 3 cut(s) 141, 208, 344
NmuCI GTSAC 1 cut(s) 21
PceI AGGCCT 1 cut(s) 53
PciSI GCTCTTC 1 cut(s) 486
PfeI GAWTC 3 cut(s) 73, 80, 527
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 3 cut(s) 299, 400, 466
PleI GAGTC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 123, 292
PspGI CCWGG 2 cut(s) 123, 292
PstNI CAGNNNCTG 1 cut(s) 464
PsyI GACNNNGTC 1 cut(s) 281
RsaI GTAC 5 cut(s) 194, 249, 554, 584, 599
RsaNI GTAC 5 cut(s) 193, 248, 553, 583, 598
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 2 cut(s) 389, 540
SatI GCNGC 3 cut(s) 298, 399, 465
Sau3AI GATC 2 cut(s) 100, 493
SchI GAGTC 1 cut(s) 517
ScrFI CCNGG 2 cut(s) 125, 294
SfaNI GCATC 1 cut(s) 233
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 606
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 123, 292
TaaI ACNGT 2 cut(s) 283, 552
TaiI ACGT 3 cut(s) 23, 119, 198
TaqI TCGA 2 cut(s) 5, 48
TatI WGTACW 3 cut(s) 247, 552, 582
TfiI GAWTC 3 cut(s) 73, 80, 527
Tru1I TTAA 2 cut(s) 389, 540
Tru9I TTAA 2 cut(s) 389, 540
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 3 cut(s) 297, 398, 464
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 540, 560
TspGWI ACGGA 2 cut(s) 474, 548
Tth111I GACNNNGTC 1 cut(s) 281
XbaI TCTAGA 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
XspI CTAG 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.