Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036582.1

Orthogroup ID

OG0011497

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3108

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036582.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 674 bp

atgattgctgcagccaagactaggctattcctactcaatatgatgttgtggtggaaaggtctactgccggaggacatgacggcaggcagaggaaaaggagaattttgttgcaactggtcagcagtctcttttctgtgcgggcgtgccagcaccgttcgggtgcggtcgtcaggggtgtcccttgatctgacttcttttgagcgattgtggacgaagatagcaccaacctcgtcgcaggattctttatgcctcgtggtgaggacttttgctaagattcttcaaaatcacacaatcgatactcgacgtcgtagatcgattagagcgaaaatcattgggaagtggggagaacttgctaaagctcggctcccgaggaaactaggaccgaagcacgttgacagagggtttggtggcactgacagtcggctcctgaggattctgggactggagtgtggtcaccgggcagccattgacggtacggcagagatgtcgatagacgacgccacgtcaccgacgcctctgtccgccatagtcgaggcctttgagaaactcgccaagattctggattcccaagaagaagaaggtgatctgcatttggatacgttctgccacgcttgctctctcgtctctattctcttcagttgcctcggcctcgctttcaagttcgccgagatgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

224

Amino Acids

24.76

Weight (kDa)

9.11

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39670
fragaria_vesca	FvH4_4g27590
malus_domestica	MD13G1043300.v1.1 MD16G1044100.v1.1
prunus_persica	Prupe.1G309200_v2.0.a1 Prupe.1G309200_v2.0.a1
pyrus_communis	pycom13g03810 pycom16g03830
rosa_chinensis	RchiOBHm_Chr4g0435431
rosa_laevigata	RLG00000006593
rosa_multiflora	Rmu_co8406707.1_g000001 Rmu_sc0001940.1_g000024 Rmu_sc0036582.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376670
rosa_rugosa	Rorug04G0284800
rosa_samantha	Rh4AG340700 Rh4BG349000 Rh4CG363500 Rh4DG343200
rosa_wichuraiana	Rw4G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	517
AatII	GACGTC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	61
AciI	CCGC	3 cut(s)	138, 163, 522
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	619
AcyI	GRCGYC	3 cut(s)	304, 498, 512
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	281, 658
AhdI	GACNNNNNGTC	1 cut(s)	502
AjiI	CACGTC	1 cut(s)	504
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	130, 628
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	2 cut(s)	534, 646
ApeKI	GCWGC	3 cut(s)	8, 11, 461
ApoI	RAATTY	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	4 cut(s)	268, 446, 498, 593
AvaI	CYCGRG	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	380
AxyI	CCTNAGG	1 cut(s)	428
BauI	CACGAG	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	23, 473
BccI	CCATC	1 cut(s)	664
BceAI	ACGGC	2 cut(s)	96, 492
BcgI	CGANNNNNNTGC	4 cut(s)	210, 244, 468, 502
BciVI	GTATCC	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	2 cut(s)	130, 628
BfaI	CTAG	2 cut(s)	21, 377
BfmI	CTRYAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	589
BisI	GCNGC	3 cut(s)	9, 12, 462
BlsI	GCNGC	3 cut(s)	10, 13, 463
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	1 cut(s)	380
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmeT110I	CYCGRG	1 cut(s)	367
BmgBI	CACGTC	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	365, 425
BmrFI	CCNGG	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	458
Bsa29I	ATCGAT	2 cut(s)	294, 314
BsaHI	GRCGYC	3 cut(s)	304, 498, 512
BsaJI	CCNNGG	2 cut(s)	368, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse1I	ACTGG	2 cut(s)	119, 447
Bse21I	CCTNAGG	1 cut(s)	428
BseCI	ATCGAT	2 cut(s)	294, 314
BseDI	CCNNGG	2 cut(s)	368, 643
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	119, 447
BseXI	GCAGC	2 cut(s)	23, 473
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	536, 648
BshVI	ATCGAT	2 cut(s)	294, 314
BsiEI	CGRYCG	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	68, 457
BslFI	GGGAC	2 cut(s)	163, 453
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	2 cut(s)	130, 628
BsmBI	CGTCTC	1 cut(s)	628
BsmFI	GGGAC	2 cut(s)	163, 453
BsnI	GGCC	2 cut(s)	536, 648
BsoBI	CYCGRG	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	184, 311, 583
BspACI	CCGC	3 cut(s)	138, 163, 522
BspANI	GGCC	2 cut(s)	536, 648
BspCNI	CTCAG	1 cut(s)	420
BspDI	ATCGAT	2 cut(s)	294, 314
BspLI	GGNNCC	2 cut(s)	365, 425
BspMAI	CTGCAG	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	119, 447
BssECI	CCNNGG	2 cut(s)	368, 643
BssMI	GATC	3 cut(s)	184, 311, 583
BssNI	GRCGYC	3 cut(s)	304, 498, 512
BssSI	CACGAG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	251
Bst4CI	ACNGT	3 cut(s)	154, 419, 473
Bst6I	CTCTTC	1 cut(s)	638
BstACI	GRCGYC	3 cut(s)	304, 498, 512
BstC8I	GCNNGC	5 cut(s)	85, 140, 144, 148, 613
BstDEI	CTNAG	2 cut(s)	270, 428
BstEII	GGTNACC	1 cut(s)	452
BstKTI	GATC	3 cut(s)	187, 314, 586
BstMAI	GTCTC	2 cut(s)	130, 628
BstMBI	GATC	3 cut(s)	184, 311, 583
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	612
BstPI	GGTNACC	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	23, 473
BstXI	CCANNNNNNTGG	1 cut(s)	559
Bsu15I	ATCGAT	2 cut(s)	294, 314
Bsu36I	CCTNAGG	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	589
BsuRI	GGCC	2 cut(s)	536, 648
BsuTUI	ATCGAT	2 cut(s)	294, 314
BtrI	CACGTC	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	5 cut(s)	85, 140, 144, 148, 613
Cfr13I	GGNCC	1 cut(s)	380
ClaI	ATCGAT	2 cut(s)	294, 314
CseI	GACGC	2 cut(s)	506, 520
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	8 cut(s)	14, 25, 359, 364, 424, 464, 536, 648
CviKI_1	RGCY	8 cut(s)	14, 25, 359, 364, 424, 464, 536, 648
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	2 cut(s)	270, 428
DpnI	GATC	3 cut(s)	186, 313, 585
DpnII	GATC	3 cut(s)	184, 311, 583
DrdI	GACNNNNNNGTC	1 cut(s)	517
DriI	GACNNNNNGTC	1 cut(s)	502
DseDI	GACNNNNNNGTC	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	638
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EarI	CTCTTC	1 cut(s)	638
EciI	GGCGGA	1 cut(s)	511
Eco147I	AGGCCT	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	619
Eco81I	CCTNAGG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	367
Eco91I	GGTNACC	1 cut(s)	452
EcoO65I	GGTNACC	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	628
FaeI	CATG	1 cut(s)	79
FaiI	YATR	4 cut(s)	41, 77, 247, 527
FaqI	GGGAC	2 cut(s)	163, 453
FatI	CATG	1 cut(s)	75
FauI	CCCGC	1 cut(s)	131
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	9, 12, 462
Fsp4HI	GCNGC	3 cut(s)	9, 12, 462
FspBI	CTAG	2 cut(s)	21, 377
GluI	GCNGC	3 cut(s)	9, 12, 462
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	536, 648
HapII	CCGG	2 cut(s)	68, 457
HgaI	GACGC	2 cut(s)	506, 520
Hin1I	GRCGYC	3 cut(s)	304, 498, 512
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	5 cut(s)	239, 274, 433, 556, 563
HpaII	CCGG	2 cut(s)	68, 457
HphI	GGTGA	4 cut(s)	268, 446, 498, 593
Hpy166II	GTNNAC	3 cut(s)	62, 210, 394
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	3 cut(s)	367, 427, 560
Hpy8I	GTNNAC	3 cut(s)	62, 210, 394
Hpy99I	CGWCG	5 cut(s)	235, 306, 309, 500, 514
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	3 cut(s)	154, 419, 473
HpyCH4IV	ACGT	4 cut(s)	304, 390, 503, 599
HpyCH4V	TGCA	3 cut(s)	11, 111, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	612
HpyF3I	CTNAG	2 cut(s)	270, 428
HpySE526I	ACGT	4 cut(s)	304, 390, 503, 599
Hsp92I	GRCGYC	3 cut(s)	304, 498, 512
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	184, 311, 583
LmnI	GCTCC	2 cut(s)	369, 429
Lsp1109I	GCAGC	2 cut(s)	23, 473
MaeI	CTAG	2 cut(s)	21, 377
MaeII	ACGT	4 cut(s)	304, 390, 503, 599
MaeIII	GTNAC	2 cut(s)	452, 504
MalI	GATC	3 cut(s)	186, 313, 585
MboI	GATC	3 cut(s)	184, 311, 583
MboII	GAAGA	5 cut(s)	226, 269, 584, 587, 625
MluCI	AATT	1 cut(s)	101
MspI	CCGG	2 cut(s)	68, 457
MspR9I	CCNGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	612
NciI	CCSGG	1 cut(s)	458
NdeII	GATC	3 cut(s)	184, 311, 583
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	365, 425
NmeAIII	GCCGAG	2 cut(s)	340, 624
NmuCI	GTSAC	2 cut(s)	452, 504
PceI	AGGCCT	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PfeI	GAWTC	5 cut(s)	239, 274, 433, 556, 563
PkrI	GCNGC	3 cut(s)	10, 13, 463
PspEI	GGTNACC	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	365, 425
PspPI	GGNCC	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SatI	GCNGC	3 cut(s)	9, 12, 462
Sau3AI	GATC	3 cut(s)	184, 311, 583
Sau96I	GGNCC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	458
SetI	ASST	8 cut(s)	61, 230, 307, 361, 393, 506, 583, 602
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	380
Sse9I	AATT	1 cut(s)	101
SseBI	AGGCCT	1 cut(s)	536
SsiI	CCGC	3 cut(s)	138, 163, 522
SspMI	CTAG	2 cut(s)	21, 377
StuI	AGGCCT	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	456
TaaI	ACNGT	3 cut(s)	154, 419, 473
TaiI	ACGT	4 cut(s)	307, 393, 506, 602
TaqI	TCGA	5 cut(s)	294, 301, 314, 488, 531
TaqII	GACCGA	1 cut(s)	397
TasI	AATT	1 cut(s)	101
TfiI	GAWTC	5 cut(s)	239, 274, 433, 556, 563
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	2 cut(s)	452, 504
TseI	GCWGC	3 cut(s)	8, 11, 461
Tsp45I	GTSAC	2 cut(s)	452, 504
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	2 cut(s)	21, 377
ZraI	GACGTC	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.