Rmu_co8406707.1_g000001

transfer

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8406707.1
Physical Location & Seq
Forward (+)
814 .. 1116
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8406707.1_g000001.1.cds

Sequence Viewer

Length: 303 bp
atgtcgatagacgacgccacgtcaccgacgcctctgtccgccatagtcgaggcctttgagaaactcgccaagattctggattcccaagaagaagaaggtgatctgcatttggatacgttctgccacgcttgctctctcgtctctattctcttcagttgcctcggcctcgctttcaagttcgccgagatggagtacgtctcaaaggtttcattcacaattttcaaactttcaattgctcaatttgtccatgtttcgaatgatattaagttgaaatcaattaattgtttgggatggaaatgctaa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.08

Weight (kDa)

4.98

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AciI CCGC 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 136
AcyI GRCGYC 2 cut(s) 15, 29
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 4 cut(s) 175, 223, 231, 271
AhdI GACNNNNNGTC 1 cut(s) 19
AjiI CACGTC 1 cut(s) 21
Alw26I GTCTC 2 cut(s) 145, 202
AoxI GGCC 2 cut(s) 51, 163
AseI ATTAAT 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 15, 110
AsuII TTCGAA 1 cut(s) 254
BccI CCATC 2 cut(s) 181, 285
BciVI GTATCC 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 145, 202
BfuI GTATCC 1 cut(s) 106
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgBI CACGTC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 182, 214
Bpu14I TTCGAA 1 cut(s) 254
BsaHI GRCGYC 2 cut(s) 15, 29
BsaJI CCNNGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 296
BshFI GGCC 2 cut(s) 53, 165
BsmAI GTCTC 2 cut(s) 145, 202
BsmBI CGTCTC 2 cut(s) 145, 202
BsnI GGCC 2 cut(s) 53, 165
Bsp119I TTCGAA 1 cut(s) 254
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 39
BspANI GGCC 2 cut(s) 53, 165
BspT104I TTCGAA 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 100
BssNI GRCGYC 2 cut(s) 15, 29
Bst6I CTCTTC 1 cut(s) 155
BstACI GRCGYC 2 cut(s) 15, 29
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 130
BstF5I GGATG 1 cut(s) 296
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 145, 202
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 53, 165
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 130
CseI GACGC 2 cut(s) 23, 37
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 248
CviJI RGCY 2 cut(s) 53, 165
CviKI_1 RGCY 2 cut(s) 53, 165
CviQI GTAC 1 cut(s) 193
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DrdI GACNNNNNNGTC 1 cut(s) 34
DriI GACNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 155
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 155
EciI GGCGGA 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 136
Esp3I CGTCTC 2 cut(s) 145, 202
FaeI CATG 1 cut(s) 251
FaiI YATR 2 cut(s) 44, 249
FatI CATG 1 cut(s) 247
HaeIII GGCC 2 cut(s) 53, 165
HgaI GACGC 2 cut(s) 23, 37
Hin1I GRCGYC 2 cut(s) 15, 29
Hin1II CATG 1 cut(s) 251
HinfI GANTC 2 cut(s) 73, 80
HphI GGTGA 2 cut(s) 15, 110
Hpy188III TCNNGA 1 cut(s) 77
Hpy99I CGWCG 2 cut(s) 17, 31
HpyAV CCTTC 1 cut(s) 89
HpyCH4IV ACGT 3 cut(s) 20, 116, 195
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpySE526I ACGT 3 cut(s) 20, 116, 195
Hsp92I GRCGYC 2 cut(s) 15, 29
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 1 cut(s) 62
MaeII ACGT 3 cut(s) 20, 116, 195
MaeIII GTNAC 1 cut(s) 21
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 3 cut(s) 101, 104, 142
MfeI CAATTG 1 cut(s) 231
MluCI AATT 5 cut(s) 216, 231, 239, 276, 280
MnlI CCTC 4 cut(s) 42, 43, 170, 176
MseI TTAA 2 cut(s) 264, 279
MunI CAATTG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 251
NmeAIII GCCGAG 2 cut(s) 141, 208
NmuCI GTSAC 1 cut(s) 21
NspV TTCGAA 1 cut(s) 254
PceI AGGCCT 1 cut(s) 53
PfeI GAWTC 2 cut(s) 73, 80
PshBI ATTAAT 1 cut(s) 279
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SaqAI TTAA 2 cut(s) 264, 279
Sau3AI GATC 1 cut(s) 100
SetI ASST 5 cut(s) 23, 100, 119, 198, 207
SfuI TTCGAA 1 cut(s) 254
Sse9I AATT 5 cut(s) 216, 231, 239, 276, 280
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 53
TaiI ACGT 3 cut(s) 23, 119, 198
TaqI TCGA 3 cut(s) 5, 48, 254
TasI AATT 5 cut(s) 216, 231, 239, 276, 280
TfiI GAWTC 2 cut(s) 73, 80
Tru1I TTAA 2 cut(s) 264, 279
Tru9I TTAA 2 cut(s) 264, 279
TseFI GTSAC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 198
VspI ATTAAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.