Rmu_sc0001940.1_g000024

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001940.1
OG0011497
Physical Location & Seq
Forward (+)
83532 .. 87819
4288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001940.1_g000024.1.cds

Sequence Viewer

Length: 1113 bp
atgattgctgcagccaagactaggctattcctactcaatatgatgttgtggtggaaaggtctactgccggaggacatgacggcaggcagaggaaaaggagaattttgttgcaactggtcagcagtctcttttctgtgcgggcgtgccagcaccgttcgggtgcggtcgtcaggggtgtcccttgatctgacttcttttgagcgattgtggacgaagatagcaccaacctcgtcgcaggattctttatgcctcgtggtgaggacttttgctaagattcttcaaaatcacacaatcgatactcgacgtcgtagatcgattagagcgaaaatcattgggaagtggggagaacttgctaaagctcggctcccgaggaaactaggaccgaagcacgttgacagagggtttggtggcactgacagtcggctcctgaggattctgggactggagtgtggtcaccgggcagccattgacggtacggcagagatgtcgatagacgacgccacgtcaccgacgcctctgtccgccatagtcgaggcctttgagaaactcgccaagattctggattcccaagaagaagaaggtgatctgcatttggatacgttctgccacgcttgctctctcgtctctattctcttcagttgcctcggcctcgctttcaagttcgccgagatggagtacgtctcaaaggttgataatctcttgcaagcatcaaagacttacgatactttagtacacatacttgattttgatgttgcaaatgacactgtcaaatcaccaggcagccgttcacgcaacttacgccgagttaggcagggtcttgacctcatcagagctatatttgaaaactttttggcgacagatgacaactctttaagggaggcagcttcaacagcttatgcccaagtttgtgcgccataccacacttgggcagtcaggacagcagttgctgctggtatgtatgctcttccgtcaagggatcaacttctgatgagtctcaaagaaacccatgaatcggcagagattaaaatgaaacagtacatccgtgcctcgcttccagttatccagtacattgataagctgtacctttctagagatatcgttttggactggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

370

Amino Acids

41.37

Weight (kDa)

8.9

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 517
AatII GACGTC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 61
AciI CCGC 3 cut(s) 138, 163, 522
AclWI GGATC 1 cut(s) 984
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 619
AcyI GRCGYC 3 cut(s) 304, 498, 512
AfaI GTAC 6 cut(s) 475, 677, 732, 1037, 1067, 1082
AfiI CCNNNNNNNGG 3 cut(s) 21, 925, 1012
AgsI TTSAA 4 cut(s) 281, 658, 842, 888
AhdI GACNNNNNGTC 1 cut(s) 502
AjiI CACGTC 1 cut(s) 504
AjnI CCWGG 1 cut(s) 775
AluBI AGCT 5 cut(s) 359, 833, 884, 893, 1078
AluI AGCT 5 cut(s) 359, 833, 884, 893, 1078
Alw26I GTCTC 4 cut(s) 130, 628, 685, 998
AlwI GGATC 1 cut(s) 984
AlwNI CAGNNNCTG 1 cut(s) 947
Ama87I CYCGRG 1 cut(s) 367
AoxI GGCC 2 cut(s) 534, 646
ApeKI GCWGC 6 cut(s) 8, 11, 461, 780, 881, 947
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AspLEI GCGC 1 cut(s) 913
AspS9I GGNCC 1 cut(s) 380
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 5 cut(s) 268, 446, 498, 593, 765
AvaI CYCGRG 1 cut(s) 367
AvaII GGWCC 1 cut(s) 380
AxyI CCTNAGG 1 cut(s) 428
BaeI ACNNNNGTAYC 2 cut(s) 714, 747
BauI CACGAG 1 cut(s) 251
BbvI GCAGC 5 cut(s) 23, 473, 792, 893, 934
BccI CCATC 1 cut(s) 664
BceAI ACGGC 3 cut(s) 96, 492, 768
BcgI CGANNNNNNTGC 4 cut(s) 210, 244, 468, 502
BciT130I CCWGG 1 cut(s) 777
BciVI GTATCC 1 cut(s) 589
BcnI CCSGG 1 cut(s) 458
BcoDI GTCTC 4 cut(s) 130, 628, 685, 998
BfaI CTAG 3 cut(s) 21, 377, 1089
BfmI CTRYAG 1 cut(s) 9
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 6 cut(s) 9, 12, 462, 781, 882, 948
BlsI GCNGC 6 cut(s) 10, 13, 463, 782, 883, 949
Bme1390I CCNGG 2 cut(s) 458, 777
Bme18I GGWCC 1 cut(s) 380
BmeRI GACNNNNNGTC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 2 cut(s) 365, 425
BmrFI CCNGG 2 cut(s) 458, 777
BmsI GCATC 1 cut(s) 716
BplI GAGNNNNNCTC 2 cut(s) 665, 697
BpmI CTGGAG 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 458
Bsa29I ATCGAT 2 cut(s) 294, 314
BsaHI GRCGYC 3 cut(s) 304, 498, 512
BsaJI CCNNGG 2 cut(s) 368, 643
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 925, 1012
Bse1I ACTGG 5 cut(s) 119, 447, 1055, 1063, 1112
Bse21I CCTNAGG 1 cut(s) 428
BseBI CCWGG 1 cut(s) 777
BseCI ATCGAT 2 cut(s) 294, 314
BseDI CCNNGG 2 cut(s) 368, 643
BseGI GGATG 1 cut(s) 1038
BseLI CCNNNNNNNGG 3 cut(s) 21, 925, 1012
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 5 cut(s) 119, 447, 1055, 1063, 1112
BseXI GCAGC 5 cut(s) 23, 473, 792, 893, 934
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 2 cut(s) 536, 648
BshVI ATCGAT 2 cut(s) 294, 314
BsiEI CGRYCG 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 2 cut(s) 68, 457
BslFI GGGAC 2 cut(s) 163, 453
BslI CCNNNNNNNGG 3 cut(s) 21, 925, 1012
BsmAI GTCTC 4 cut(s) 130, 628, 685, 998
BsmBI CGTCTC 2 cut(s) 628, 685
BsmFI GGGAC 2 cut(s) 163, 453
BsnI GGCC 2 cut(s) 536, 648
BsoBI CYCGRG 1 cut(s) 367
Bsp143I GATC 4 cut(s) 184, 311, 583, 976
BspACI CCGC 3 cut(s) 138, 163, 522
BspANI GGCC 2 cut(s) 536, 648
BspCNI CTCAG 1 cut(s) 420
BspDI ATCGAT 2 cut(s) 294, 314
BspLI GGNNCC 2 cut(s) 365, 425
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 984
BspQI GCTCTTC 1 cut(s) 969
BsrI ACTGG 5 cut(s) 119, 447, 1055, 1063, 1112
BssECI CCNNGG 2 cut(s) 368, 643
BssMI GATC 4 cut(s) 184, 311, 583, 976
BssNI GRCGYC 3 cut(s) 304, 498, 512
BssSI CACGAG 1 cut(s) 251
Bst2BI CACGAG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 777
Bst4CI ACNGT 5 cut(s) 154, 419, 473, 766, 1035
Bst6I CTCTTC 2 cut(s) 638, 969
BstACI GRCGYC 3 cut(s) 304, 498, 512
BstAPI GCANNNNNTGC 1 cut(s) 947
BstC8I GCNNGC 6 cut(s) 85, 140, 144, 148, 613, 705
BstDEI CTNAG 2 cut(s) 270, 428
BstEII GGTNACC 1 cut(s) 452
BstF5I GGATG 1 cut(s) 1038
BstHHI GCGC 1 cut(s) 913
BstKTI GATC 4 cut(s) 187, 314, 586, 979
BstMAI GTCTC 4 cut(s) 130, 628, 685, 998
BstMBI GATC 4 cut(s) 184, 311, 583, 976
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 5 cut(s) 612, 789, 798, 890, 947
BstNI CCWGG 1 cut(s) 777
BstPI GGTNACC 1 cut(s) 452
BstSCI CCNGG 2 cut(s) 456, 775
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 5 cut(s) 23, 473, 792, 893, 934
BstXI CCANNNNNNTGG 1 cut(s) 559
Bsu15I ATCGAT 2 cut(s) 294, 314
Bsu36I CCTNAGG 1 cut(s) 428
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 2 cut(s) 536, 648
BsuTUI ATCGAT 2 cut(s) 294, 314
BtrI CACGTC 1 cut(s) 504
BtsCI GGATG 1 cut(s) 1038
BtsIMutI CAGTG 2 cut(s) 411, 762
Cac8I GCNNGC 6 cut(s) 85, 140, 144, 148, 613, 705
CaiI CAGNNNCTG 1 cut(s) 947
CfoI GCGC 1 cut(s) 913
Cfr13I GGNCC 1 cut(s) 380
ClaI ATCGAT 2 cut(s) 294, 314
CseI GACGC 2 cut(s) 506, 520
Csp6I GTAC 6 cut(s) 474, 676, 731, 1036, 1066, 1081
CviAII CATG 2 cut(s) 76, 1007
CviQI GTAC 6 cut(s) 474, 676, 731, 1036, 1066, 1081
DdeI CTNAG 2 cut(s) 270, 428
DpnI GATC 4 cut(s) 186, 313, 585, 978
DpnII GATC 4 cut(s) 184, 311, 583, 976
DrdI GACNNNNNNGTC 1 cut(s) 517
DriI GACNNNNNGTC 1 cut(s) 502
DseDI GACNNNNNNGTC 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 638, 969
Eam1105I GACNNNNNGTC 1 cut(s) 502
EarI CTCTTC 2 cut(s) 638, 969
EciI GGCGGA 1 cut(s) 511
Eco147I AGGCCT 1 cut(s) 536
Eco32I GATATC 1 cut(s) 1096
Eco47I GGWCC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 619
Eco81I CCTNAGG 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 367
Eco91I GGTNACC 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 775
EcoRV GATATC 1 cut(s) 1096
Esp3I CGTCTC 2 cut(s) 628, 685
FaeI CATG 2 cut(s) 79, 1010
FaqI GGGAC 2 cut(s) 163, 453
FatI CATG 2 cut(s) 75, 1006
FauI CCCGC 1 cut(s) 131
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 6 cut(s) 9, 12, 462, 781, 882, 948
FokI GGATG 1 cut(s) 1025
Fsp4HI GCNGC 6 cut(s) 9, 12, 462, 781, 882, 948
FspBI CTAG 3 cut(s) 21, 377, 1089
GlaI GCGC 1 cut(s) 912
GluI GCNGC 6 cut(s) 9, 12, 462, 781, 882, 948
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 2 cut(s) 536, 648
HapII CCGG 2 cut(s) 68, 457
HgaI GACGC 2 cut(s) 506, 520
HhaI GCGC 1 cut(s) 913
Hin1I GRCGYC 3 cut(s) 304, 498, 512
Hin1II CATG 2 cut(s) 79, 1010
Hin6I GCGC 1 cut(s) 911
HinP1I GCGC 1 cut(s) 911
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 7 cut(s) 239, 274, 433, 556, 563, 991, 1010
HpaII CCGG 2 cut(s) 68, 457
HphI GGTGA 5 cut(s) 268, 446, 498, 593, 765
Hpy166II GTNNAC 5 cut(s) 62, 210, 394, 733, 788
Hpy188I TCNGA 3 cut(s) 189, 830, 987
Hpy188III TCNNGA 6 cut(s) 367, 427, 560, 818, 934, 1089
Hpy8I GTNNAC 5 cut(s) 62, 210, 394, 733, 788
Hpy99I CGWCG 5 cut(s) 235, 306, 309, 500, 514
HpyAV CCTTC 1 cut(s) 572
HpyCH4III ACNGT 5 cut(s) 154, 419, 473, 766, 1035
HpyCH4IV ACGT 5 cut(s) 304, 390, 503, 599, 678
HpyCH4V TGCA 5 cut(s) 11, 111, 589, 703, 755
HpyF10VI GCNNNNNNNGC 5 cut(s) 612, 789, 798, 890, 947
HpyF3I CTNAG 2 cut(s) 270, 428
HpySE526I ACGT 5 cut(s) 304, 390, 503, 599, 678
Hsp92I GRCGYC 3 cut(s) 304, 498, 512
Hsp92II CATG 2 cut(s) 79, 1010
HspAI GCGC 1 cut(s) 911
Kzo9I GATC 4 cut(s) 184, 311, 583, 976
LguI GCTCTTC 1 cut(s) 969
LmnI GCTCC 2 cut(s) 369, 429
Lsp1109I GCAGC 5 cut(s) 23, 473, 792, 893, 934
LweI GCATC 1 cut(s) 716
MaeI CTAG 3 cut(s) 21, 377, 1089
MaeII ACGT 5 cut(s) 304, 390, 503, 599, 678
MaeIII GTNAC 2 cut(s) 452, 504
MalI GATC 4 cut(s) 186, 313, 585, 978
MboI GATC 4 cut(s) 184, 311, 583, 976
MboII GAAGA 6 cut(s) 226, 269, 584, 587, 625, 956
MluCI AATT 1 cut(s) 101
MlyI GAGTC 1 cut(s) 1000
MseI TTAA 2 cut(s) 872, 1023
MspI CCGG 2 cut(s) 68, 457
MspR9I CCNGG 2 cut(s) 458, 777
MvaI CCWGG 1 cut(s) 777
MwoI GCNNNNNNNGC 5 cut(s) 612, 789, 798, 890, 947
NciI CCSGG 1 cut(s) 458
NdeII GATC 4 cut(s) 184, 311, 583, 976
NlaIII CATG 2 cut(s) 79, 1010
NlaIV GGNNCC 2 cut(s) 365, 425
NmeAIII GCCGAG 4 cut(s) 340, 624, 691, 827
NmuCI GTSAC 2 cut(s) 452, 504
PceI AGGCCT 1 cut(s) 536
PciSI GCTCTTC 1 cut(s) 969
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PfeI GAWTC 6 cut(s) 239, 274, 433, 556, 563, 1010
PflFI GACNNNGTC 1 cut(s) 764
PkrI GCNGC 6 cut(s) 10, 13, 463, 782, 883, 949
PleI GAGTC 1 cut(s) 999
PpsI GAGTC 1 cut(s) 999
Psp6I CCWGG 1 cut(s) 775
PspEI GGTNACC 1 cut(s) 452
PspGI CCWGG 1 cut(s) 775
PspN4I GGNNCC 2 cut(s) 365, 425
PspPI GGNCC 1 cut(s) 380
PstI CTGCAG 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 947
PsyI GACNNNGTC 1 cut(s) 764
RsaI GTAC 6 cut(s) 475, 677, 732, 1037, 1067, 1082
RsaNI GTAC 6 cut(s) 474, 676, 731, 1036, 1066, 1081
SapI GCTCTTC 1 cut(s) 969
SaqAI TTAA 2 cut(s) 872, 1023
SatI GCNGC 6 cut(s) 9, 12, 462, 781, 882, 948
Sau3AI GATC 4 cut(s) 184, 311, 583, 976
Sau96I GGNCC 1 cut(s) 380
SchI GAGTC 1 cut(s) 1000
ScrFI CCNGG 2 cut(s) 458, 777
SfaNI GCATC 1 cut(s) 716
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 380
Sse9I AATT 1 cut(s) 101
SseBI AGGCCT 1 cut(s) 536
SsiI CCGC 3 cut(s) 138, 163, 522
SspMI CTAG 3 cut(s) 21, 377, 1089
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 456, 775
TaaI ACNGT 5 cut(s) 154, 419, 473, 766, 1035
TaiI ACGT 5 cut(s) 307, 393, 506, 602, 681
TaqI TCGA 5 cut(s) 294, 301, 314, 488, 531
TaqII GACCGA 1 cut(s) 397
TasI AATT 1 cut(s) 101
TatI WGTACW 3 cut(s) 730, 1035, 1065
TfiI GAWTC 6 cut(s) 239, 274, 433, 556, 563, 1010
Tru1I TTAA 2 cut(s) 872, 1023
Tru9I TTAA 2 cut(s) 872, 1023
TscAI CASTG 2 cut(s) 418, 769
TseFI GTSAC 2 cut(s) 452, 504
TseI GCWGC 6 cut(s) 8, 11, 461, 780, 881, 947
Tsp45I GTSAC 2 cut(s) 452, 504
TspDTI ATGAA 2 cut(s) 1023, 1043
TspGWI ACGGA 2 cut(s) 957, 1031
TspRI CASTG 2 cut(s) 418, 769
Tth111I GACNNNGTC 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 380
XapI RAATTY 1 cut(s) 101
XbaI TCTAGA 1 cut(s) 1088
XcmI CCANNNNNNNNNTGG 1 cut(s) 921
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 3 cut(s) 21, 377, 1089
ZraI GACGTC 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.