AT4G39940

Catalyzes the synthesis of activated sulfate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010698
Physical Location & Seq
Forward (+)
18519599 .. 18521605
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39940.1

Sequence Viewer

Length: 882 bp
ATGGAAGGATTAGCTATCAGAGCATCTCGACCGTCGGTTTTCTGTTCTATTCCAGGTCTCGGCGGCGATTCCCACCGAAAACCTCCAAGTGACGGTTTCCTCAAGCTGCCTGCGTCGTCTATTCCGGCGGACAGCCGAAAATTAGTAGCGAATTCTACTTCCTTTCATCCAATCTCAGCCGTTAACGTCTCTGCTCAAGCTTCCCTCACCGCTGATTTTCCCGCCCTTTCAGAAACTATACTGAAAGAGGGAAGAAATAACGGAAAAGAGAAAGCAGAGAACATCGTGTGGCACGAGAGTTCGATATGCAGATGCGACAGACAACAACTTCTTCAACAAAAGGGTTGTGTCGTTTGGATCACTGGTCTCAGTGGTTCAGGGAAAAGCACTGTTGCTTGTGCACTAAGTAAAGCATTGTTTGAAAGAGGCAAACTTACTTACACACTCGACGGCGACAATGTCCGTCACGGCCTTAACCGTGACCTCACTTTCAAAGCAGAGCACCGCACCGAAAACATTAGAAGAATTGGTGAGGTGGCTAAGTTGTTTGCTGACGTCGGAGTCATTTGTATAGCAAGTTTGATTTCTCCGTACCGGAGAGACAGAGACGCGTGCCGGTCCTTGTTACCTGACGGCGATTTCGTCGAGGTCTTCATGGACGTTCCTCTTCATGTGTGCGAGTCGAGAGATCCAAAGGGGTTGTACAAGCTTGCACGTGCAGGCAAAATCAAAGGCTTCACTGGAATCGACGACCCTTACGAGGCACCAGTGAATTGCGAGGTAGTGCTGAAACACACAGGAGACGACGAGTCGTGTTCGCCACGTCAGATGGCTGAGAACATCATCTCTTACCTGCAAAACAAAGGTTATCTTGAGGGCTAA

Protein Analysis

293

Amino Acids

31.98

Weight (kDa)

8.01

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APS_kinase PF01583 114 - 264 4.6e-71 Adenylylsulphate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39940
fragaria_vesca FvH4_1g17660 FvH4_1g17660
malus_domestica MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica Prupe.6G221200_v2.0.a1
pyrus_communis pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis RchiOBHm_Chr2g0107981
rosa_laevigata RLG00000017631
rosa_multiflora Rmu_sc0001484.1_g000028
rosa_roxburghii Rroxscaffold_2G00135760
rosa_rugosa Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana Rw2G015750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 560
AatII GACGTC 1 cut(s) 558
Acc36I ACCTGC 1 cut(s) 861
AccB1I GGYRCC 1 cut(s) 763
AccII CGCG 1 cut(s) 611
AciI CCGC 5 cut(s) 63, 128, 210, 222, 505
AclWI GGATC 2 cut(s) 365, 683
AcsI RAATTY 1 cut(s) 151
AcvI CACGTG 1 cut(s) 716
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 2 cut(s) 593, 704
AfiI CCNNNNNNNGG 3 cut(s) 59, 92, 760
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 3 cut(s) 335, 422, 493
AhdI GACNNNNNGTC 1 cut(s) 808
AjiI CACGTC 1 cut(s) 824
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 4 cut(s) 14, 106, 200, 709
AluI AGCT 4 cut(s) 14, 106, 200, 709
Alw21I GWGCWC 2 cut(s) 403, 504
Alw26I GTCTC 6 cut(s) 62, 193, 371, 594, 600, 795
Alw44I GTGCAC 1 cut(s) 399
AlwI GGATC 2 cut(s) 365, 683
AoxI GGCC 1 cut(s) 469
ApaLI GTGCAC 1 cut(s) 399
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 151
ArsI GACNNNNNNTTYG 2 cut(s) 623, 655
AspS9I GGNCC 1 cut(s) 618
AsuHPI GGTGA 2 cut(s) 199, 542
AvaII GGWCC 1 cut(s) 618
BaeGI GKGCMC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 763
BauI CACGAG 1 cut(s) 293
BbrPI CACGTG 1 cut(s) 716
BbsI GAAGAC 1 cut(s) 643
Bbv12I GWGCWC 2 cut(s) 403, 504
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 823
BceAI ACGGC 4 cut(s) 164, 466, 484, 649
BciT130I CCWGG 1 cut(s) 54
BcoDI GTCTC 6 cut(s) 62, 193, 371, 594, 600, 795
BfuAI ACCTGC 1 cut(s) 861
BisI GCNGC 2 cut(s) 64, 107
BlsI GCNGC 2 cut(s) 65, 108
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 618
BmeRI GACNNNNNGTC 1 cut(s) 808
BmgBI CACGTC 1 cut(s) 824
BmgT120I GGNCC 1 cut(s) 618
BmiI GGNNCC 1 cut(s) 765
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 2 cut(s) 32, 302
BpiI GAAGAC 1 cut(s) 643
BpuEI CTTGAG 2 cut(s) 86, 180
BsaAI YACGTR 1 cut(s) 716
BsaHI GRCGYC 1 cut(s) 555
BsaI GGTCTC 2 cut(s) 62, 371
BsaWI WCCGGW 1 cut(s) 594
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 92, 760
Bse118I RCCGGY 1 cut(s) 615
Bse1I ACTGG 3 cut(s) 367, 745, 767
BseBI CCWGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 59, 92, 760
BseMII CTCAG 3 cut(s) 189, 382, 825
BseNI ACTGG 3 cut(s) 367, 745, 767
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 1 cut(s) 93
BsgI GTGCAG 1 cut(s) 738
Bsh1236I CGCG 1 cut(s) 611
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 471
BshNI GGYRCC 1 cut(s) 763
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 2 cut(s) 403, 504
BsiSI CCGG 3 cut(s) 125, 595, 616
BslI CCNNNNNNNGG 3 cut(s) 59, 92, 760
BsmAI GTCTC 6 cut(s) 62, 193, 371, 594, 600, 795
BsmBI CGTCTC 3 cut(s) 193, 600, 795
BsnI GGCC 1 cut(s) 471
Bso31I GGTCTC 2 cut(s) 62, 371
Bsp1286I GDGCHC 2 cut(s) 403, 504
Bsp1407I TGTACA 1 cut(s) 702
Bsp143I GATC 2 cut(s) 357, 688
BspACI CCGC 5 cut(s) 63, 128, 210, 222, 505
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 3 cut(s) 188, 381, 826
BspFNI CGCG 1 cut(s) 611
BspLI GGNNCC 1 cut(s) 765
BspMI ACCTGC 1 cut(s) 861
BspPI GGATC 2 cut(s) 365, 683
BspT107I GGYRCC 1 cut(s) 763
BspTNI GGTCTC 2 cut(s) 62, 371
BsrFI RCCGGY 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 702
BsrI ACTGG 3 cut(s) 367, 745, 767
BssAI RCCGGY 1 cut(s) 615
BssMI GATC 2 cut(s) 357, 688
BssNI GRCGYC 1 cut(s) 555
BssSI CACGAG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 4 cut(s) 33, 95, 391, 479
Bst6I CTCTTC 1 cut(s) 672
BstACI GRCGYC 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 702
BstBAI YACGTR 1 cut(s) 716
BstC8I GCNNGC 4 cut(s) 111, 613, 711, 721
BstDEI CTNAG 5 cut(s) 175, 368, 404, 540, 834
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 1 cut(s) 611
BstKTI GATC 2 cut(s) 360, 691
BstMAI GTCTC 6 cut(s) 62, 193, 371, 594, 600, 795
BstMBI GATC 2 cut(s) 357, 688
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 403
BstUI CGCG 1 cut(s) 611
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 643
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BsuRI GGCC 1 cut(s) 471
BtrI CACGTC 1 cut(s) 824
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 5 cut(s) 360, 376, 387, 738, 774
BveI ACCTGC 1 cut(s) 861
Cac8I GCNNGC 4 cut(s) 111, 613, 711, 721
Cfr10I RCCGGY 1 cut(s) 615
Cfr13I GGNCC 1 cut(s) 618
CseI GACGC 2 cut(s) 102, 617
Csp6I GTAC 2 cut(s) 592, 703
CviAII CATG 2 cut(s) 655, 671
CviQI GTAC 2 cut(s) 592, 703
DdeI CTNAG 5 cut(s) 175, 368, 404, 540, 834
DpnI GATC 2 cut(s) 359, 690
DpnII GATC 2 cut(s) 357, 688
DrdI GACNNNNNNGTC 1 cut(s) 560
DriI GACNNNNNGTC 1 cut(s) 808
DseDI GACNNNNNNGTC 1 cut(s) 560
Eam1104I CTCTTC 1 cut(s) 672
Eam1105I GACNNNNNGTC 1 cut(s) 808
EarI CTCTTC 1 cut(s) 672
EciI GGCGGA 1 cut(s) 143
Eco31I GGTCTC 2 cut(s) 62, 371
Eco47I GGWCC 1 cut(s) 618
Eco72I CACGTG 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 52
Esp3I CGTCTC 3 cut(s) 193, 600, 795
FaeI CATG 2 cut(s) 658, 674
FaiI YATR 5 cut(s) 239, 307, 572, 656, 672
FalI AAGNNNNNCTT 1 cut(s) 855
FatI CATG 2 cut(s) 654, 670
FauI CCCGC 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 64, 107
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 64, 107
GluI GCNGC 2 cut(s) 64, 107
HaeIII GGCC 1 cut(s) 471
HapII CCGG 3 cut(s) 125, 595, 616
HgaI GACGC 2 cut(s) 102, 617
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 2 cut(s) 658, 674
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 2 cut(s) 198, 707
HinfI GANTC 5 cut(s) 68, 561, 680, 744, 809
HpaI GTTAAC 1 cut(s) 184
HpaII CCGG 3 cut(s) 125, 595, 616
HphI GGTGA 2 cut(s) 199, 542
Hpy166II GTNNAC 2 cut(s) 184, 401
Hpy188I TCNGA 4 cut(s) 20, 232, 560, 828
Hpy188III TCNNGA 3 cut(s) 27, 684, 872
Hpy8I GTNNAC 2 cut(s) 184, 401
Hpy99I CGWCG 7 cut(s) 37, 118, 452, 560, 647, 752, 809
HpyCH4III ACNGT 4 cut(s) 33, 95, 391, 479
HpyCH4IV ACGT 5 cut(s) 186, 555, 660, 715, 823
HpyCH4V TGCA 5 cut(s) 309, 401, 713, 719, 856
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 5 cut(s) 175, 368, 404, 540, 834
HpySE526I ACGT 5 cut(s) 186, 555, 660, 715, 823
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 2 cut(s) 658, 674
KspAI GTTAAC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 357, 688
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 2 cut(s) 32, 302
MaeII ACGT 5 cut(s) 186, 555, 660, 715, 823
MaeIII GTNAC 4 cut(s) 89, 464, 479, 624
MalI GATC 2 cut(s) 359, 690
MboI GATC 2 cut(s) 357, 688
MboII GAAGA 5 cut(s) 264, 323, 534, 643, 659
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 2 cut(s) 403, 504
MluCI AATT 4 cut(s) 140, 151, 525, 772
MluI ACGCGT 1 cut(s) 609
MlyI GAGTC 3 cut(s) 570, 689, 818
MmeI TCCRAC 1 cut(s) 538
MseI TTAA 2 cut(s) 183, 474
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 3 cut(s) 125, 595, 616
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
MvnI CGCG 1 cut(s) 611
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 2 cut(s) 357, 688
NlaIII CATG 2 cut(s) 658, 674
NlaIV GGNNCC 1 cut(s) 765
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 3 cut(s) 89, 464, 479
PcsI WCGNNNNNNNCGW 3 cut(s) 291, 639, 756
PfeI GAWTC 2 cut(s) 68, 744
PflFI GACNNNGTC 1 cut(s) 458
PkrI GCNGC 2 cut(s) 65, 108
PleI GAGTC 3 cut(s) 569, 688, 817
PmaCI CACGTG 1 cut(s) 716
PmlI CACGTG 1 cut(s) 716
PpsI GAGTC 3 cut(s) 569, 688, 817
Ppu21I YACGTR 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 52
PspCI CACGTG 1 cut(s) 716
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 765
PspPI GGNCC 1 cut(s) 618
PsuI RGATCY 1 cut(s) 688
PsyI GACNNNGTC 1 cut(s) 458
RsaI GTAC 2 cut(s) 593, 704
RsaNI GTAC 2 cut(s) 592, 703
SaqAI TTAA 2 cut(s) 183, 474
SatI GCNGC 2 cut(s) 64, 107
Sau3AI GATC 2 cut(s) 357, 688
Sau96I GGNCC 1 cut(s) 618
SchI GAGTC 3 cut(s) 570, 689, 818
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 2 cut(s) 403, 504
SfaNI GCATC 2 cut(s) 32, 302
SinI GGWCC 1 cut(s) 618
SmlI CTYRAG 3 cut(s) 101, 195, 872
SmoI CTYRAG 3 cut(s) 101, 195, 872
Sse9I AATT 4 cut(s) 140, 151, 525, 772
SsiI CCGC 5 cut(s) 63, 128, 210, 222, 505
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 4 cut(s) 33, 95, 391, 479
TaiI ACGT 5 cut(s) 189, 558, 663, 718, 826
TaqI TCGA 6 cut(s) 28, 302, 447, 645, 683, 747
TasI AATT 4 cut(s) 140, 151, 525, 772
TatI WGTACW 1 cut(s) 702
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 2 cut(s) 68, 744
Tru1I TTAA 2 cut(s) 183, 474
Tru9I TTAA 2 cut(s) 183, 474
TscAI CASTG 5 cut(s) 367, 376, 394, 745, 774
TseFI GTSAC 3 cut(s) 89, 464, 479
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 3 cut(s) 89, 464, 479
TspDTI ATGAA 3 cut(s) 155, 643, 659
TspGWI ACGGA 3 cut(s) 276, 452, 579
TspRI CASTG 5 cut(s) 367, 376, 394, 745, 774
Tth111I GACNNNGTC 1 cut(s) 458
VneI GTGCAC 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 618
XapI RAATTY 1 cut(s) 151
ZraI GACGTC 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.