Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Forward (+)

19355989 .. 19360282

Gene Structure 4294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG206100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATGTCGACCGCTGGGAATTCAACGAACATCGTGTGGCATAAATGTGCGGTGGAGAAACTGGATAGGCAGCGTTTACTTCAGCAGAAAGGCTGTGTCATATGGATTACTGGTCTTAGTGGTTCAGGAAAAAGCACTGTGGCGTGTGCTTTGAGTCAAGGCTTGCACTTGAGAGGAAAGCTGACCTACATTCTTGATGGTGACAACGTTCGGCATGGTCTAAATCGTGATCTTGGTTTCAACGCAGAGGATCGTGCAGAAAACATACGAAGAATTGCTGAGGTCGCTAAGCTGTTTGCGGATGCTGGCATCATTTGTATTGCTAGTTTAATATCTCCTTACCGAAAGGACCGAGATGCCTGCCGTGCACTATTTCCGGAAGGAGATTTTATTGAGGTGTTCATGGACGTGCCACTCAACATATGTGAGAATAGGGATCCGAAGGGCCTCTACAAGCTTGCACGAGCTGGAAAAATCAAAGGTTTTACTGGGGTTGATGATCCATATGAGCCACCACTAAACTGCGAGATACTGTTGCAGCAGAAGGGAAGGGACTGCGTCTCCCCAAGTAGTATGGCAGAAACGGTGATATCTTACTTAGAGGAGAAAGGGTATCTGCAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

208

Amino Acids

22.99

Weight (kDa)

7.53

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	30 - 179	2.8e-70	Adenylylsulphate kinase
AAA_33	PF13671	33 - 145	1.7e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	8
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	3 cut(s)	12, 50, 299
AclI	AACGTT	1 cut(s)	207
AclWI	GGATC	4 cut(s)	258, 431, 444, 494
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	24, 241
AjiI	CACGTC	1 cut(s)	409
AluBI	AGCT	4 cut(s)	181, 292, 457, 467
AluI	AGCT	4 cut(s)	181, 292, 457, 467
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	565
Alw44I	GTGCAC	1 cut(s)	366
AlwI	GGATC	4 cut(s)	258, 431, 444, 494
Aor13HI	TCCGGA	1 cut(s)	376
AoxI	GGCC	2 cut(s)	445, 621
ApaLI	GTGCAC	1 cut(s)	366
ApeKI	GCWGC	2 cut(s)	70, 538
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	349, 445
AsuHPI	GGTGA	2 cut(s)	212, 598
AvaII	GGWCC	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	436
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BauI	CACGAG	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	370
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	82, 550
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	348
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	617
BisI	GCNGC	2 cut(s)	71, 539
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	2 cut(s)	72, 540
Bme18I	GGWCC	1 cut(s)	349
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	349, 445
BmiI	GGNNCC	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	292, 318, 346
BmuI	ACTGGG	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	4 cut(s)	545, 575, 596, 626
Bse1I	ACTGG	3 cut(s)	66, 115, 493
BseAI	TCCGGA	1 cut(s)	376
BseGI	GGATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	3 cut(s)	66, 115, 493
BseRI	GAGGAG	1 cut(s)	617
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	82, 550
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	447, 623
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	566
BsmAI	GTCTC	1 cut(s)	565
BsmBI	CGTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	2 cut(s)	447, 623
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	4 cut(s)	229, 250, 436, 499
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	3 cut(s)	12, 50, 299
BspANI	GGCC	2 cut(s)	447, 623
BspCNI	CTCAG	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	621
BspPI	GGATC	4 cut(s)	258, 431, 444, 494
BsrI	ACTGG	3 cut(s)	66, 115, 493
BssMI	GATC	4 cut(s)	229, 250, 436, 499
BssSI	CACGAG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	462
Bst4CI	ACNGT	3 cut(s)	139, 534, 586
BstC8I	GCNNGC	5 cut(s)	164, 307, 361, 459, 621
BstDEI	CTNAG	4 cut(s)	116, 279, 288, 598
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	4 cut(s)	232, 253, 439, 502
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	4 cut(s)	229, 250, 436, 499
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 365
BstSFI	CTRYAG	1 cut(s)	617
BstSLI	GKGCMC	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	82, 550
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	447, 623
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	5 cut(s)	164, 307, 361, 459, 621
Cfr13I	GGNCC	2 cut(s)	349, 445
CseI	GACGC	1 cut(s)	547
CviAII	CATG	2 cut(s)	215, 403
CviJI	RGCY	9 cut(s)	93, 162, 181, 292, 447, 457, 467, 511, 623
CviKI_1	RGCY	9 cut(s)	93, 162, 181, 292, 447, 457, 467, 511, 623
DdeI	CTNAG	4 cut(s)	116, 279, 288, 598
DpnI	GATC	4 cut(s)	231, 252, 438, 501
DpnII	GATC	4 cut(s)	229, 250, 436, 499
Eco147I	AGGCCT	1 cut(s)	623
Eco32I	GATATC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	591
Esp3I	CGTCTC	1 cut(s)	565
FaeI	CATG	2 cut(s)	218, 406
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	2 cut(s)	214, 402
FauNDI	CATATG	3 cut(s)	101, 422, 505
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	2 cut(s)	71, 539
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	71, 539
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	2 cut(s)	71, 539
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	447, 623
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	547
Hin1II	CATG	2 cut(s)	218, 406
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	212, 598
Hpy166II	GTNNAC	3 cut(s)	9, 77, 368
Hpy188I	TCNGA	1 cut(s)	441
Hpy188III	TCNNGA	4 cut(s)	126, 194, 227, 377
Hpy8I	GTNNAC	3 cut(s)	9, 77, 368
HpyAV	CCTTC	4 cut(s)	374, 436, 538, 543
HpyCH4III	ACNGT	3 cut(s)	139, 534, 586
HpyCH4IV	ACGT	2 cut(s)	207, 408
HpyCH4V	TGCA	6 cut(s)	166, 257, 368, 461, 538, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 365
HpyF3I	CTNAG	4 cut(s)	116, 279, 288, 598
HpySE526I	ACGT	2 cut(s)	207, 408
Hsp92II	CATG	2 cut(s)	218, 406
Kpn2I	TCCGGA	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	229, 250, 436, 499
LpnPI	CCDG	9 cut(s)	47, 96, 111, 291, 373, 390, 453, 474, 605
Lsp1109I	GCAGC	2 cut(s)	82, 550
LweI	GCATC	3 cut(s)	292, 318, 346
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	207, 408
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	4 cut(s)	231, 252, 438, 501
MboI	GATC	4 cut(s)	229, 250, 436, 499
MboII	GAAGA	1 cut(s)	282
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	2 cut(s)	19, 273
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	6 cut(s)	167, 241, 274, 388, 458, 595
MroI	TCCGGA	1 cut(s)	376
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	2 cut(s)	45, 407
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	284, 365
NdeI	CATATG	3 cut(s)	101, 422, 505
NdeII	GATC	4 cut(s)	229, 250, 436, 499
NlaIII	CATG	2 cut(s)	218, 406
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	623
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	72, 540
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	2 cut(s)	349, 445
PstI	CTGCAG	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	436
PsyI	GACNNNGTC	1 cut(s)	557
RseI	CAYNNNNRTG	2 cut(s)	45, 407
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	2 cut(s)	71, 539
Sau3AI	GATC	4 cut(s)	229, 250, 436, 499
Sau96I	GGNCC	2 cut(s)	349, 445
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	370
SfaNI	GCATC	3 cut(s)	292, 318, 346
SfcI	CTRYAG	1 cut(s)	617
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	2 cut(s)	45, 407
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	19, 273
SseBI	AGGCCT	1 cut(s)	623
SsiI	CCGC	3 cut(s)	12, 50, 299
SspMI	CTAG	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	623
TaaI	ACNGT	3 cut(s)	139, 534, 586
TaiI	ACGT	2 cut(s)	210, 411
TaqI	TCGA	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	2 cut(s)	19, 273
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	70, 538
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	557
VneI	GTGCAC	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.