Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Forward (+)

19839486 .. 19845731

Gene Structure 6246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG211300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCGACCGCGGGGAATTCAACGAACATCGTGTGGCATAAATGTGCGGTGGAGAAACTGGATAGGCAGCGTTTACTTCAGCAGAAAGGCTGTGTCATATGGATTACTGGTCTTAGTGGTTCAGGAAAAAGCACTGTGGCATGTGCTTTGAGTCAAGGCTTGCACTTGAAAGGAAAGCTGACCTACATTCTTGATGGTGACAACGTTCGGCACGGTCTAAATCGTGATCTTGGTTTCAACGCAGAGGATCGTGCAGAAAATATACGAAGAATTGCTGAGGTCGCTAAGCTCTTTGCGGATGCTGGCATCATTTGTATTGCTAGTTTAATATCTCCTTACCGAAAGGACCGAGATGCCTGCCGTGTGCTATTTCCTGAAGGAGATTTTATTGAGGTGTTCATGGACGTGCCACTCAACATATGTGAGAATAGGGATCCGAAGGGCCTCTACAAGCTTGCACGAGCTGGAAAAATCAAAGGTTTTACTGGGGTTGATGATCCATATGAGCCACCACTAAACTGCGAGATAGTGTTGCAGCAGAAGGGAAGGGACTGCGTCTCCCCAAGTAGTATGGCTGAAACGGTGATATCTTACTTAGAGGAGAAAGGGTATCTGCAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

207

Amino Acids

22.85

Weight (kDa)

7.53

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	29 - 178	2.5e-70	Adenylylsulphate kinase
AAA_33	PF13671	32 - 144	5.2e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	11
AciI	CCGC	4 cut(s)	9, 11, 47, 296
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	4 cut(s)	255, 428, 441, 491
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	2 cut(s)	62, 396
AgsI	TTSAA	3 cut(s)	21, 169, 238
AjiI	CACGTC	1 cut(s)	406
AluBI	AGCT	4 cut(s)	178, 289, 454, 464
AluI	AGCT	4 cut(s)	178, 289, 454, 464
Alw26I	GTCTC	1 cut(s)	562
AlwI	GGATC	4 cut(s)	255, 428, 441, 491
AoxI	GGCC	2 cut(s)	442, 618
ApeKI	GCWGC	2 cut(s)	67, 535
ApoI	RAATTY	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	346, 442
AsuHPI	GGTGA	2 cut(s)	209, 595
AvaII	GGWCC	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	433
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
BauI	CACGAG	1 cut(s)	459
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	79, 547
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	345
BcgI	CGANNNNNNTGC	2 cut(s)	339, 373
BcoDI	GTCTC	1 cut(s)	562
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	614
BisI	GCNGC	2 cut(s)	68, 536
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	2 cut(s)	69, 537
Bme18I	GGWCC	1 cut(s)	346
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	346, 442
BmiI	GGNNCC	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	3 cut(s)	289, 315, 343
BmuI	ACTGGG	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	9
BsaXI	ACNNNNNCTCC	4 cut(s)	542, 572, 593, 623
Bse1I	ACTGG	3 cut(s)	63, 112, 490
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	3 cut(s)	63, 112, 490
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	2 cut(s)	79, 547
BsgI	GTGCAG	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	444, 620
BsiEI	CGRYCG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	563
BsmAI	GTCTC	1 cut(s)	562
BsmBI	CGTCTC	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	2 cut(s)	444, 620
Bsp143I	GATC	4 cut(s)	226, 247, 433, 496
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	4 cut(s)	9, 11, 47, 296
BspANI	GGCC	2 cut(s)	444, 620
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	618
BspPI	GGATC	4 cut(s)	255, 428, 441, 491
BsrI	ACTGG	3 cut(s)	63, 112, 490
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	4 cut(s)	226, 247, 433, 496
BssSI	CACGAG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	136, 215, 583
BstC8I	GCNNGC	5 cut(s)	161, 304, 358, 456, 618
BstDEI	CTNAG	4 cut(s)	113, 276, 285, 595
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	4 cut(s)	229, 250, 436, 499
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	4 cut(s)	226, 247, 433, 496
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	614
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	79, 547
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	444, 620
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	5 cut(s)	161, 304, 358, 456, 618
Cfr13I	GGNCC	2 cut(s)	346, 442
Cfr42I	CCGCGG	1 cut(s)	12
CseI	GACGC	1 cut(s)	544
CviAII	CATG	2 cut(s)	141, 400
DdeI	CTNAG	4 cut(s)	113, 276, 285, 595
DpnI	GATC	4 cut(s)	228, 249, 435, 498
DpnII	GATC	4 cut(s)	226, 247, 433, 496
Eco147I	AGGCCT	1 cut(s)	620
Eco32I	GATATC	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	2 cut(s)	62, 396
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	588
Esp3I	CGTCTC	1 cut(s)	562
FaeI	CATG	2 cut(s)	144, 403
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	2 cut(s)	140, 399
FauI	CCCGC	1 cut(s)	4
FauNDI	CATATG	3 cut(s)	98, 419, 502
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	68, 536
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	2 cut(s)	68, 536
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	2 cut(s)	68, 536
HaeIII	GGCC	2 cut(s)	444, 620
HgaI	GACGC	1 cut(s)	544
Hin1II	CATG	2 cut(s)	144, 403
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	2 cut(s)	209, 595
Hpy166II	GTNNAC	2 cut(s)	6, 74
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	4 cut(s)	123, 191, 224, 374
Hpy8I	GTNNAC	2 cut(s)	6, 74
HpyAV	CCTTC	4 cut(s)	371, 433, 535, 540
HpyCH4III	ACNGT	3 cut(s)	136, 215, 583
HpyCH4IV	ACGT	2 cut(s)	204, 405
HpyCH4V	TGCA	5 cut(s)	163, 254, 458, 535, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	4 cut(s)	113, 276, 285, 595
HpySE526I	ACGT	2 cut(s)	204, 405
Hsp92II	CATG	2 cut(s)	144, 403
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	226, 247, 433, 496
LpnPI	CCDG	9 cut(s)	44, 93, 108, 288, 370, 387, 450, 471, 602
Lsp1109I	GCAGC	2 cut(s)	79, 547
LweI	GCATC	3 cut(s)	289, 315, 343
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	2 cut(s)	204, 405
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	4 cut(s)	228, 249, 435, 498
MboI	GATC	4 cut(s)	226, 247, 433, 496
MboII	GAAGA	1 cut(s)	279
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	2 cut(s)	16, 270
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	238, 271, 385, 455, 592
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	2 cut(s)	42, 404
MspA1I	CMGCKG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeI	CATATG	3 cut(s)	98, 419, 502
NdeII	GATC	4 cut(s)	226, 247, 433, 496
NlaIII	CATG	2 cut(s)	144, 403
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	620
PflFI	GACNNNGTC	1 cut(s)	554
PkrI	GCNGC	2 cut(s)	69, 537
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Psp1406I	AACGTT	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	2 cut(s)	346, 442
PstI	CTGCAG	1 cut(s)	618
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	554
RseI	CAYNNNNRTG	2 cut(s)	42, 404
SacII	CCGCGG	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	68, 536
Sau3AI	GATC	4 cut(s)	226, 247, 433, 496
Sau96I	GGNCC	2 cut(s)	346, 442
SchI	GAGTC	1 cut(s)	160
SfaNI	GCATC	3 cut(s)	289, 315, 343
SfcI	CTRYAG	1 cut(s)	614
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	42, 404
Sse9I	AATT	2 cut(s)	16, 270
SseBI	AGGCCT	1 cut(s)	620
SsiI	CCGC	4 cut(s)	9, 11, 47, 296
SspMI	CTAG	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	620
TaaI	ACNGT	3 cut(s)	136, 215, 583
TaiI	ACGT	2 cut(s)	207, 408
TaqI	TCGA	1 cut(s)	5
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	16, 270
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	67, 535
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	388
TspRI	CASTG	1 cut(s)	139
Tth111I	GACNNNGTC	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.