Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Forward (+)

11769291 .. 11770829

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15050.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAGAGGAAAGCTCACCTACATCCTTGATGGTGACAATGTTCGTCACGGTCTAAATCGTGATCGATCCTTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGCCGAGGTAGCTAAGCTCTTTGCGGATGCTGGTATCATTTGTATTGCTAGCTTAATATCTCCCTACAGAAAGGACCGAGATGCCTGCCGTGCACTATTTCCCCAAGGAGATTTTATTGAGGTGTACATGGACGTGCCGCTGCATGTGTGTGAGAATAGGGACCCAAAGGGACTGTACAAGCTTGCACGAGCTGGAAAAATTAAAAGCTTTACAGGGGTTGATGATCCATATGAGCCACCATTAAAGTGCGAGATGGTATTGCAGCAGAAGGGTGGGGATTGTGTCTCCCCAGGCGAGATGGCTGAAACCGTGATATCATATTTGGACGAGAAAGGGTATCTGCAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

155

Amino Acids

17.31

Weight (kDa)

6.14

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	137, 251
AclWI	GGATC	2 cut(s)	60, 332
AfaI	GTAC	2 cut(s)	239, 290
AgsI	TTSAA	1 cut(s)	79
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	7 cut(s)	13, 125, 130, 165, 295, 305, 321
AluI	AGCT	7 cut(s)	13, 125, 130, 165, 295, 305, 321
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	403
Alw44I	GTGCAC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	60, 332
ApaLI	GTGCAC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	253, 376
AspS9I	GGNCC	2 cut(s)	187, 274
AsuHPI	GGTGA	2 cut(s)	7, 44
AsuNHI	GCTAGC	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	187, 274
BaeGI	GKGCMC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	240, 388
BccI	CCATC	3 cut(s)	23, 361, 406
BceAI	ACGGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	2 cut(s)	178, 455
BisI	GCNGC	3 cut(s)	251, 254, 377
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	3 cut(s)	252, 255, 378
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	2 cut(s)	187, 274
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	187, 274
BmiI	GGNNCC	2 cut(s)	275, 276
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	130, 184
BmtI	GCTAGC	1 cut(s)	165
BplI	GAGNNNNNCTC	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	117, 217, 403
BseBI	CCWGG	1 cut(s)	405
BseCI	ATCGAT	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	117, 217, 403
BseGI	GGATG	2 cut(s)	21, 145
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	240, 388
BsgI	GTGCAG	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	2 cut(s)	287, 297
BsmAI	GTCTC	1 cut(s)	403
BsmFI	GGGAC	2 cut(s)	287, 297
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp1407I	TGTACA	2 cut(s)	237, 288
Bsp143I	GATC	4 cut(s)	61, 65, 88, 337
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	137, 251
BspDI	ATCGAT	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	275, 276
BspMAI	CTGCAG	1 cut(s)	459
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	60, 332
BsrGI	TGTACA	2 cut(s)	237, 288
BssECI	CCNNGG	3 cut(s)	117, 217, 403
BssMI	GATC	4 cut(s)	61, 65, 88, 337
BssSI	CACGAG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	3 cut(s)	50, 288, 424
BstAUI	TGTACA	2 cut(s)	237, 288
BstC8I	GCNNGC	4 cut(s)	163, 199, 297, 459
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	21, 145
BstKTI	GATC	4 cut(s)	64, 68, 91, 340
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	4 cut(s)	61, 65, 88, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 203
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	2 cut(s)	178, 455
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	240, 388
Bsu15I	ATCGAT	1 cut(s)	64
BsuTUI	ATCGAT	1 cut(s)	64
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	21, 145
Cac8I	GCNNGC	4 cut(s)	163, 199, 297, 459
Cfr13I	GGNCC	2 cut(s)	187, 274
ClaI	ATCGAT	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	238, 289
CviAII	CATG	3 cut(s)	241, 257, 462
CviJI	RGCY	9 cut(s)	13, 125, 130, 165, 295, 305, 321, 349, 416
CviKI_1	RGCY	9 cut(s)	13, 125, 130, 165, 295, 305, 321, 349, 416
CviQI	GTAC	2 cut(s)	238, 289
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	4 cut(s)	63, 67, 90, 339
DpnII	GATC	4 cut(s)	61, 65, 88, 337
Eco130I	CCWWGG	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	187, 274
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	244, 260, 465
FaiI	YATR	7 cut(s)	104, 242, 258, 343, 345, 433, 463
FaqI	GGGAC	2 cut(s)	287, 297
FatI	CATG	3 cut(s)	240, 256, 461
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	3 cut(s)	251, 254, 377
FokI	GGATG	2 cut(s)	8, 152
Fsp4HI	GCNGC	3 cut(s)	251, 254, 377
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	3 cut(s)	251, 254, 377
Hin1II	CATG	3 cut(s)	244, 260, 465
HindIII	AAGCTT	2 cut(s)	293, 319
HphI	GGTGA	2 cut(s)	7, 44
Hpy166II	GTNNAC	2 cut(s)	206, 238
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	2 cut(s)	206, 238
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	3 cut(s)	50, 288, 424
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	6 cut(s)	95, 206, 256, 299, 376, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 203
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	244, 260, 465
KflI	GGGWCCC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	61, 65, 88, 337
LpnPI	CCDG	7 cut(s)	129, 211, 291, 312, 390, 417, 443
Lsp1109I	GCAGC	2 cut(s)	240, 388
LweI	GCATC	2 cut(s)	130, 184
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	32, 44
MalI	GATC	4 cut(s)	63, 67, 90, 339
MboI	GATC	4 cut(s)	61, 65, 88, 337
MboII	GAAGA	2 cut(s)	98, 120
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	2 cut(s)	111, 312
MnlI	CCTC	2 cut(s)	112, 226
MseI	TTAA	3 cut(s)	167, 315, 356
MslI	CAYNNNNRTG	3 cut(s)	245, 261, 358
MspA1I	CMGCKG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	122, 203
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	4 cut(s)	61, 65, 88, 337
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	244, 260, 465
NlaIV	GGNNCC	2 cut(s)	275, 276
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	32, 44
NspI	RCATGY	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	252, 255, 378
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	275, 276
PspPI	GGNCC	2 cut(s)	187, 274
PspPPI	RGGWCCY	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	459
RsaI	GTAC	2 cut(s)	239, 290
RsaNI	GTAC	2 cut(s)	238, 289
RseI	CAYNNNNRTG	3 cut(s)	245, 261, 358
SaqAI	TTAA	3 cut(s)	167, 315, 356
SatI	GCNGC	3 cut(s)	251, 254, 377
Sau3AI	GATC	4 cut(s)	61, 65, 88, 337
Sau96I	GGNCC	2 cut(s)	187, 274
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	2 cut(s)	130, 184
SfcI	CTRYAG	2 cut(s)	178, 455
SinI	GGWCC	2 cut(s)	187, 274
SmiMI	CAYNNNNRTG	3 cut(s)	245, 261, 358
Sse9I	AATT	2 cut(s)	111, 312
SsiI	CCGC	2 cut(s)	137, 251
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	3 cut(s)	50, 288, 424
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	64
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	111, 312
TatI	WGTACW	2 cut(s)	237, 288
TauI	GCSGC	1 cut(s)	253
Tru1I	TTAA	3 cut(s)	167, 315, 356
Tru9I	TTAA	3 cut(s)	167, 315, 356
TseFI	GTSAC	2 cut(s)	32, 44
TseI	GCWGC	2 cut(s)	253, 376
Tsp45I	GTSAC	2 cut(s)	32, 44
VneI	GTGCAC	1 cut(s)	204
VpaK11BI	GGWCC	2 cut(s)	187, 274
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.