Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Forward (+)

10284367 .. 10288802

Gene Structure 4436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17660.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAATGCGGTGAAGGCAGCTCGGCCGTCGAGTTTTGGCCTGACGCCGTCGGACGCTGAATTTGGATCTCCGCCGCCGCCGGCGAGGTTAGGATTCGTGAAGGTGAACGGAAGCAATGTGAATATGAGGTTGAGTTTGAGCGGCGGAGTTGATGCAGGATCTAAGGGTTTACGGCCGATTAAGGCCACGGAGGACCAAACCGTGTCCGTCAAGTCTGATCGCGCCGCCATTAATGGTAAAAATTCCCACCAGATGTCAACTGCGGGGAACTCAACGAACATCGTGTGGCATAAATGTGCGGTCGAGAAAGTGGATAGGCAGCAGTTACTTAAGCAGAAAGGCTGTGTCATATGGATTACTGGTCTTAGTGGTTCAGGAAAAAGCACTGTGGCATGTGCTTTGAGTCAAGGCTTGCACATAAGAGGAAAACTGACCTACATTCTTGATGGTGACAACGTCAGGCATGGTCTAAATCGTGATCTTGGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGCTGAGGTCGCTAAGCTCTTTGCGGATGCTGGCATCATTTGTATTGCTAGTTTAATATCTCCTTACCGAAAGGACCGAGAGGCCTGCCGTGCACTATTTCCAGAAGGAGATTTTATTGAGGTGTTCATGGACGTGCCACTTAATGTATGTGAGAATAGAGATCCGAAGGGCCTCTACAAGCTTGCACGAGCTGGAAAAATCAAAGGTTTTACTGGGGTTGATGATCCATATGAGCCACCACTAAACTGTGAGATAGTGTTGCAGCAGAAGGGAAGGGATTGCGTCTCCCCAAGTAGTATGGCTGAAACGGTGATATCTTACTTAGAGGAGAAAGGCTATTTGCAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

292

Amino Acids

31.45

Weight (kDa)

8.95

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	57 - 206	7.1e-71	Adenylylsulphate kinase
AAA_33	PF13671	60 - 172	1.1e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	141
AccII	CGCG	1 cut(s)	222
AclWI	GGATC	4 cut(s)	73, 166, 680, 743
AcoI	YGGCCR	2 cut(s)	23, 173
AcsI	RAATTY	2 cut(s)	59, 241
AcyI	GRCGYC	1 cut(s)	44
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	490
AjiI	CACGTC	1 cut(s)	658
AluBI	AGCT	4 cut(s)	20, 541, 706, 716
AluI	AGCT	4 cut(s)	20, 541, 706, 716
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	1 cut(s)	814
Alw44I	GTGCAC	1 cut(s)	615
AlwI	GGATC	4 cut(s)	73, 166, 680, 743
AoxI	GGCC	7 cut(s)	23, 37, 173, 183, 606, 694, 870
ApaLI	GTGCAC	1 cut(s)	615
ApeKI	GCWGC	3 cut(s)	17, 319, 787
ApoI	RAATTY	2 cut(s)	59, 241
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	3 cut(s)	193, 598, 694
AsuHPI	GGTGA	4 cut(s)	22, 115, 461, 847
AvaII	GGWCC	2 cut(s)	193, 598
BaeGI	GKGCMC	1 cut(s)	619
BarI	GAAGNNNNNNTAC	2 cut(s)	683, 715
BauI	CACGAG	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	619
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	3 cut(s)	29, 331, 799
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	4 cut(s)	10, 31, 188, 597
BcgI	CGANNNNNNTGC	2 cut(s)	591, 625
BcoDI	GTCTC	1 cut(s)	814
BfaI	CTAG	1 cut(s)	573
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	7 cut(s)	18, 74, 77, 142, 225, 320, 788
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	7 cut(s)	19, 75, 78, 143, 226, 321, 789
Bme18I	GGWCC	2 cut(s)	193, 598
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	3 cut(s)	193, 598, 694
BmrI	ACTGGG	1 cut(s)	747
BmsI	GCATC	3 cut(s)	142, 541, 567
BmuI	ACTGGG	1 cut(s)	747
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu1102I	GCTNAGC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	364, 742
Bse3DI	GCAATG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	556
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	364, 742
BseRI	GAGGAG	1 cut(s)	866
BseSI	GKGCMC	1 cut(s)	619
BseX3I	CGGCCG	2 cut(s)	23, 173
BseXI	GCAGC	3 cut(s)	29, 331, 799
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	3 cut(s)	26, 176, 303
BshFI	GGCC	7 cut(s)	25, 39, 175, 185, 608, 696, 872
BsiEI	CGRYCG	3 cut(s)	26, 176, 303
BsiHKAI	GWGCWC	1 cut(s)	619
BsiSI	CCGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	814
BsmBI	CGTCTC	1 cut(s)	814
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	7 cut(s)	25, 39, 175, 185, 608, 696, 872
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	7 cut(s)	65, 158, 217, 478, 499, 685, 748
Bsp1720I	GCTNAGC	1 cut(s)	537
BspANI	GGCC	7 cut(s)	25, 39, 175, 185, 608, 696, 872
BspCNI	CTCAG	1 cut(s)	520
BspFNI	CGCG	1 cut(s)	222
BspPI	GGATC	4 cut(s)	73, 166, 680, 743
BspTI	CTTAAG	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	364, 742
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	7 cut(s)	65, 158, 217, 478, 499, 685, 748
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	711
Bst2BI	CACGAG	1 cut(s)	711
Bst4CI	ACNGT	4 cut(s)	202, 388, 773, 835
BstACI	GRCGYC	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	6 cut(s)	81, 413, 556, 610, 708, 870
BstDEI	CTNAG	5 cut(s)	162, 365, 528, 537, 847
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	556
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	7 cut(s)	68, 161, 220, 481, 502, 688, 751
BstMAI	GTCTC	1 cut(s)	814
BstMBI	GATC	7 cut(s)	65, 158, 217, 478, 499, 685, 748
BstMCI	CGRYCG	3 cut(s)	26, 176, 303
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 533, 614
BstNSI	RCATGY	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	29, 331, 799
BstX2I	RGATCY	3 cut(s)	65, 158, 685
BstYI	RGATCY	3 cut(s)	65, 158, 685
BstZI	CGGCCG	2 cut(s)	23, 173
BsuRI	GGCC	7 cut(s)	25, 39, 175, 185, 608, 696, 872
BtgI	CCRYGG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	6 cut(s)	81, 413, 556, 610, 708, 870
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	193, 598, 694
CseI	GACGC	3 cut(s)	52, 62, 796
CviAII	CATG	3 cut(s)	393, 464, 652
DdeI	CTNAG	5 cut(s)	162, 365, 528, 537, 847
DpnI	GATC	7 cut(s)	67, 160, 219, 480, 501, 687, 750
DpnII	GATC	7 cut(s)	65, 158, 217, 478, 499, 685, 748
EaeI	YGGCCR	2 cut(s)	23, 173
EagI	CGGCCG	2 cut(s)	23, 173
EciI	GGCGGA	2 cut(s)	60, 159
EclXI	CGGCCG	2 cut(s)	23, 173
Eco147I	AGGCCT	2 cut(s)	608, 872
Eco32I	GATATC	1 cut(s)	840
Eco47I	GGWCC	2 cut(s)	193, 598
Eco52I	CGGCCG	2 cut(s)	23, 173
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRV	GATATC	1 cut(s)	840
Esp3I	CGTCTC	1 cut(s)	814
FaeI	CATG	3 cut(s)	396, 467, 655
FatI	CATG	3 cut(s)	392, 463, 651
FauI	CCCGC	1 cut(s)	256
FauNDI	CATATG	2 cut(s)	350, 754
Fnu4HI	GCNGC	7 cut(s)	18, 74, 77, 142, 225, 320, 788
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	7 cut(s)	18, 74, 77, 142, 225, 320, 788
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	7 cut(s)	18, 74, 77, 142, 225, 320, 788
HaeIII	GGCC	7 cut(s)	25, 39, 175, 185, 608, 696, 872
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	3 cut(s)	52, 62, 796
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	396, 467, 655
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	2 cut(s)	93, 403
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	4 cut(s)	22, 115, 461, 847
Hpy166II	GTNNAC	4 cut(s)	106, 170, 258, 617
Hpy188I	TCNGA	3 cut(s)	52, 217, 690
Hpy188III	TCNNGA	6 cut(s)	97, 304, 375, 443, 476, 626
Hpy8I	GTNNAC	4 cut(s)	106, 170, 258, 617
Hpy99I	CGWCG	2 cut(s)	31, 52
HpyAV	CCTTC	6 cut(s)	7, 94, 623, 685, 787, 792
HpyCH4III	ACNGT	4 cut(s)	202, 388, 773, 835
HpyCH4IV	ACGT	2 cut(s)	456, 657
HpyCH4V	TGCA	7 cut(s)	155, 415, 506, 617, 710, 787, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 533, 614
HpyF3I	CTNAG	5 cut(s)	162, 365, 528, 537, 847
HpySE526I	ACGT	2 cut(s)	456, 657
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	396, 467, 655
HspAI	GCGC	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	7 cut(s)	65, 158, 217, 478, 499, 685, 748
Lsp1109I	GCAGC	3 cut(s)	29, 331, 799
LweI	GCATC	3 cut(s)	142, 541, 567
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	2 cut(s)	456, 657
MaeIII	GTNAC	2 cut(s)	324, 449
MalI	GATC	7 cut(s)	67, 160, 219, 480, 501, 687, 750
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	7 cut(s)	65, 158, 217, 478, 499, 685, 748
MboII	GAAGA	2 cut(s)	509, 531
MflI	RGATCY	3 cut(s)	65, 158, 685
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	3 cut(s)	59, 241, 522
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	78, 120, 184, 416, 523, 598, 637, 707, 844
MreI	CGCCGGCG	1 cut(s)	79
MroNI	GCCGGC	1 cut(s)	79
MseI	TTAA	5 cut(s)	180, 231, 330, 578, 666
MslI	CAYNNNNRTG	2 cut(s)	294, 656
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	14, 533, 614
NaeI	GCCGGC	1 cut(s)	81
NdeI	CATATG	2 cut(s)	350, 754
NdeII	GATC	7 cut(s)	65, 158, 217, 478, 499, 685, 748
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	396, 467, 655
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	396
PceI	AGGCCT	2 cut(s)	608, 872
PctI	GAATGC	1 cut(s)	10
PdiI	GCCGGC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	93
PflFI	GACNNNGTC	2 cut(s)	46, 455
PkrI	GCNGC	7 cut(s)	19, 75, 78, 143, 226, 321, 789
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	231
PspPI	GGNCC	3 cut(s)	193, 598, 694
PsuI	RGATCY	3 cut(s)	65, 158, 685
PsyI	GACNNNGTC	2 cut(s)	46, 455
RseI	CAYNNNNRTG	2 cut(s)	294, 656
SaqAI	TTAA	5 cut(s)	180, 231, 330, 578, 666
SatI	GCNGC	7 cut(s)	18, 74, 77, 142, 225, 320, 788
Sau3AI	GATC	7 cut(s)	65, 158, 217, 478, 499, 685, 748
Sau96I	GGNCC	3 cut(s)	193, 598, 694
SchI	GAGTC	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	3 cut(s)	142, 541, 567
SgrAI	CRCCGGYG	1 cut(s)	79
SinI	GGWCC	2 cut(s)	193, 598
SmiMI	CAYNNNNRTG	2 cut(s)	294, 656
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	59, 241, 522
SseBI	AGGCCT	2 cut(s)	608, 872
SspMI	CTAG	1 cut(s)	573
StuI	AGGCCT	2 cut(s)	608, 872
TaaI	ACNGT	4 cut(s)	202, 388, 773, 835
TaiI	ACGT	2 cut(s)	459, 660
TaqI	TCGA	2 cut(s)	29, 303
TaqII	GACCGA	1 cut(s)	615
TasI	AATT	3 cut(s)	59, 241, 522
TauI	GCSGC	4 cut(s)	76, 79, 144, 227
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	5 cut(s)	180, 231, 330, 578, 666
Tru9I	TTAA	5 cut(s)	180, 231, 330, 578, 666
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	3 cut(s)	17, 319, 787
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	2 cut(s)	17, 640
TspGWI	ACGGA	3 cut(s)	123, 196, 203
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	2 cut(s)	46, 455
Vha464I	CTTAAG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	615
VpaK11BI	GGWCC	2 cut(s)	193, 598
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	2 cut(s)	59, 241
XceI	RCATGY	1 cut(s)	396
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.