Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Forward (+)

11766805 .. 11769249

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGTTTGGTGAAGTTATTGAAACCGTCGATTTGCGGCCCCCCGCGGGACATTGAATCTGGACCGTCGGTGGCGGTGGCGCCGTCGTTGTCGGCGGCGAAGCTGGGGGTTTCGAAGGTGAAAAAGGCCGGCGCTGCGATTGGATCCAGGCTTTTGCGCCCCATTAAGGCAATGGAGGACCCGACAGTTTCTTTGAGGAATGATTACCCCGCCATTTCTGGTAGAAATTTGCACCAGATGTCAACCATGGATAACTCGGCAAACATTGTGTGGCATAAGTGCTCGGTGGAGAAACTTGATAGGCAACAATTGCTTAAGCAGAAGGGCTGTGTCATATGGATTACTGGTCTAAGTGGTTCAGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

123

Amino Acids

13.02

Weight (kDa)

9.9

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccII	CGCG	1 cut(s)	46
AciI	CCGC	6 cut(s)	36, 44, 46, 74, 95, 210
AclWI	GGATC	2 cut(s)	138, 151
AcsI	RAATTY	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	46, 166
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	22, 56
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	284
AlwI	GGATC	2 cut(s)	138, 151
AoxI	GGCC	2 cut(s)	37, 126
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
AspLEI	GCGC	3 cut(s)	82, 134, 159
AspS9I	GGNCC	3 cut(s)	38, 62, 178
AsuHPI	GGTGA	2 cut(s)	22, 130
AsuII	TTCGAA	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	62, 178
BamHI	GGATCC	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	148
BfoI	RGCGCY	2 cut(s)	83, 135
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	3 cut(s)	37, 96, 135
BlsI	GCNGC	3 cut(s)	38, 97, 136
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	2 cut(s)	62, 178
BmgT120I	GGNCC	3 cut(s)	38, 62, 178
BmiI	GGNNCC	4 cut(s)	40, 81, 145, 180
BmrFI	CCNGG	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	44, 246
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 166
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	44, 246
BseLI	CCNNNNNNNGG	2 cut(s)	46, 166
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	39, 128
BshNI	GGYRCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	46, 166
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	39, 128
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	6 cut(s)	36, 44, 46, 74, 95, 210
BspANI	GGCC	2 cut(s)	39, 128
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	4 cut(s)	40, 81, 145, 180
BspPI	GGATC	2 cut(s)	138, 151
BspT104I	TTCGAA	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	44, 246
BssMI	GATC	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	27, 66, 187
BstACI	GRCGYC	1 cut(s)	80
BstAFI	CTTAAG	1 cut(s)	314
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	350
BstDSI	CCRYGG	2 cut(s)	44, 246
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	2 cut(s)	83, 135
BstHHI	GCGC	3 cut(s)	82, 134, 159
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 310
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	39, 128
BtgI	CCRYGG	2 cut(s)	44, 246
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	3 cut(s)	82, 134, 159
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	38, 62, 178
Cfr42I	CCGCGG	1 cut(s)	47
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	5 cut(s)	39, 103, 128, 151, 327
CviKI_1	RGCY	5 cut(s)	39, 103, 128, 151, 327
DdeI	CTNAG	1 cut(s)	350
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	246
Eco47I	GGWCC	2 cut(s)	62, 178
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	1 cut(s)	250
FaiI	YATR	4 cut(s)	248, 276, 335, 337
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	246
FauI	CCCGC	3 cut(s)	39, 51, 217
FauNDI	CATATG	1 cut(s)	335
Fnu4HI	GCNGC	3 cut(s)	37, 96, 135
Fsp4HI	GCNGC	3 cut(s)	37, 96, 135
GlaI	GCGC	3 cut(s)	81, 133, 158
GluI	GCNGC	3 cut(s)	37, 96, 135
GsaI	CCCAGC	1 cut(s)	107
HaeII	RGCGCY	2 cut(s)	83, 135
HaeIII	GGCC	2 cut(s)	39, 128
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	3 cut(s)	82, 134, 159
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	3 cut(s)	80, 132, 157
HinP1I	GCGC	3 cut(s)	80, 132, 157
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	22, 130
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	3 cut(s)	31, 70, 88
HpyAV	CCTTC	2 cut(s)	109, 316
HpyCH4III	ACNGT	3 cut(s)	27, 66, 187
HpyCH4V	TGCA	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 310
HpyF3I	CTNAG	1 cut(s)	350
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	3 cut(s)	80, 132, 157
KasI	GGCGCC	1 cut(s)	79
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	143
LpnPI	CCDG	9 cut(s)	45, 89, 133, 142, 160, 204, 248, 330, 345
Lsp1109I	GCAGC	1 cut(s)	121
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MfeI	CAATTG	1 cut(s)	308
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	2 cut(s)	226, 308
Mly113I	GGCGCC	1 cut(s)	80
MnlI	CCTC	2 cut(s)	169, 189
MroNI	GCCGGC	1 cut(s)	128
MseI	TTAA	2 cut(s)	165, 315
MspA1I	CMGCKG	1 cut(s)	46
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	134, 310
NaeI	GCCGGC	1 cut(s)	130
NarI	GGCGCC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	335
NdeII	GATC	1 cut(s)	143
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	4 cut(s)	40, 81, 145, 180
NmeAIII	GCCGAG	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	113
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	38, 97, 136
PluTI	GGCGCC	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	4 cut(s)	40, 81, 145, 180
PspPI	GGNCC	3 cut(s)	38, 62, 178
PspPPI	RGGWCCY	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	143
SacII	CCGCGG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	165, 315
SatI	GCNGC	3 cut(s)	37, 96, 135
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	3 cut(s)	38, 62, 178
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	3 cut(s)	105, 120, 364
SfoI	GGCGCC	1 cut(s)	81
Sfr303I	CCGCGG	1 cut(s)	47
SfuI	TTCGAA	1 cut(s)	113
SgrBI	CCGCGG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	62, 178
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	226, 308
SsiI	CCGC	6 cut(s)	36, 44, 46, 74, 95, 210
SspDI	GGCGCC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	27, 66, 187
TaqI	TCGA	2 cut(s)	29, 113
TasI	AATT	2 cut(s)	226, 308
TauI	GCSGC	2 cut(s)	39, 98
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	165, 315
Tru9I	TTAA	2 cut(s)	165, 315
TseI	GCWGC	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	62, 178
XapI	RAATTY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.