Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001484.1

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Reverse (-)

110356 .. 115259

Gene Structure 4904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001484.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgaatgtggtgaaagcagctccaccgtcgatttgtggctttaaaccgcgcgacgttgaatctgggcctccggcgacggcggcggcgaagttgggcttcgcgaaggtgaatgagagcaatgcgattaagagcttgggtttgagttgcggagttgatgtaggatccaggggtttgaggccgatcaaggccatggaggaccaaaccgtctctgtgaaaactgatcgctctgccattaatggcttttgcttacttcatattcatcctatatctctttgcttttgtcaactcctctttgcattttcttcaatatacaaccacattcattctgctattgtcatcagcgccgcagctctgttcgttttgagcgcaaatcaaagcttttcgaagctgttctccgaaaagatgtcgaccgaggggaattcaacgaacatcgtgtggcataaatgtgcggtggagaaactggataggcagcgtttacttcagcagaaaggctgtgtcatatggattactggtcttagtggttcaggaaaaagcactgtggcgtgtgctttgagtcaaggcttgcacttgagaggaaagctgacctacattcttgatggtgacaatgttcggcatggtctaaatcgtgatcttggtttcaacgcagaggatcgtgcagaaaacatacgaagaattgctgaggtcgctaagctgtttgcggatgctggcatcatttgtattgctagtttaatatctccttaccgaaaggaccgagatgcctgccgtgcactatttccggaaggagattttattgaggtgttcatggacgtgccactcaacatatgtgagaatagggatccgaagggcctctacaagcttgcacgagctggaaaaatcaaaggttttactggggttgatgatccatatgagccaccactaaactgcgagatagtgttgcagcagaagggaagggactgcgtctccccaagtagtatggctgaaacggtgatatcttacttagaggagaaaaggtatctgcaggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

341

Amino Acids

37.18

Weight (kDa)

8.63

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	407
AccII	CGCG	3 cut(s)	49, 51, 101
AccIII	TCCGGA	1 cut(s)	775
AciI	CCGC	7 cut(s)	47, 80, 83, 147, 345, 449, 698
AclWI	GGATC	6 cut(s)	156, 169, 657, 830, 843, 893
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	59, 306, 423, 640
AjiI	CACGTC	1 cut(s)	808
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	9 cut(s)	20, 132, 350, 378, 388, 580, 691, 856, 866
AluI	AGCT	9 cut(s)	20, 132, 350, 378, 388, 580, 691, 856, 866
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	2 cut(s)	211, 964
Alw44I	GTGCAC	1 cut(s)	765
AlwI	GGATC	6 cut(s)	156, 169, 657, 830, 843, 893
Aor13HI	TCCGGA	1 cut(s)	775
AoxI	GGCC	5 cut(s)	65, 176, 186, 844, 1020
ApaLI	GTGCAC	1 cut(s)	765
ApeKI	GCWGC	4 cut(s)	17, 347, 469, 937
ApoI	RAATTY	1 cut(s)	418
AseI	ATTAAT	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	3 cut(s)	51, 344, 368
AspS9I	GGNCC	4 cut(s)	65, 196, 748, 844
AsuHPI	GGTGA	4 cut(s)	22, 118, 611, 997
AsuII	TTCGAA	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	196, 748
BaeGI	GKGCMC	1 cut(s)	769
BamHI	GGATCC	2 cut(s)	161, 835
BarI	GAAGNNNNNNTAC	2 cut(s)	833, 865
BauI	CACGAG	1 cut(s)	861
Bbv12I	GWGCWC	1 cut(s)	769
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	4 cut(s)	29, 359, 481, 949
BccI	CCATC	1 cut(s)	590
BceAI	ACGGC	2 cut(s)	93, 747
BcgI	CGANNNNNNTGC	2 cut(s)	741, 775
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	211, 964
BfaI	CTAG	1 cut(s)	723
BfmI	CTRYAG	1 cut(s)	1016
BfoI	RGCGCY	1 cut(s)	345
BisI	GCNGC	7 cut(s)	18, 81, 84, 345, 348, 470, 938
BlpI	GCTNAGC	1 cut(s)	687
BlsI	GCNGC	7 cut(s)	19, 82, 85, 346, 349, 471, 939
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	2 cut(s)	196, 748
BmgBI	CACGTC	1 cut(s)	808
BmgT120I	GGNCC	4 cut(s)	65, 196, 748, 844
BmiI	GGNNCC	2 cut(s)	163, 837
BmrFI	CCNGG	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	3 cut(s)	691, 717, 745
BmuI	ACTGGG	1 cut(s)	897
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu1102I	GCTNAGC	1 cut(s)	687
Bpu14I	TTCGAA	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	589
BsaJI	CCNNGG	3 cut(s)	165, 189, 411
BsaWI	WCCGGW	1 cut(s)	775
BsaXI	ACNNNNNCTCC	6 cut(s)	141, 171, 944, 974, 995, 1025
Bse1I	ACTGG	3 cut(s)	465, 514, 892
Bse3DI	GCAATG	1 cut(s)	124
BseAI	TCCGGA	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	3 cut(s)	165, 189, 411
BseGI	GGATG	2 cut(s)	259, 706
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	3 cut(s)	465, 514, 892
BseRI	GAGGAG	2 cut(s)	278, 1016
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	4 cut(s)	29, 359, 481, 949
BsgI	GTGCAG	1 cut(s)	675
Bsh1236I	CGCG	3 cut(s)	49, 51, 101
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	5 cut(s)	67, 178, 188, 846, 1022
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	2 cut(s)	71, 776
BslFI	GGGAC	1 cut(s)	965
BsmAI	GTCTC	2 cut(s)	211, 964
BsmBI	CGTCTC	2 cut(s)	211, 964
BsmFI	GGGAC	1 cut(s)	965
BsnI	GGCC	5 cut(s)	67, 178, 188, 846, 1022
Bsp119I	TTCGAA	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp13I	TCCGGA	1 cut(s)	775
Bsp143I	GATC	7 cut(s)	161, 180, 220, 628, 649, 835, 898
Bsp1720I	GCTNAGC	1 cut(s)	687
Bsp19I	CCATGG	1 cut(s)	189
Bsp68I	TCGCGA	1 cut(s)	101
BspACI	CCGC	7 cut(s)	47, 80, 83, 147, 345, 449, 698
BspANI	GGCC	5 cut(s)	67, 178, 188, 846, 1022
BspCNI	CTCAG	1 cut(s)	670
BspEI	TCCGGA	1 cut(s)	775
BspFNI	CGCG	3 cut(s)	49, 51, 101
BspLI	GGNNCC	2 cut(s)	163, 837
BspMAI	CTGCAG	1 cut(s)	1020
BspPI	GGATC	6 cut(s)	156, 169, 657, 830, 843, 893
BspT104I	TTCGAA	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	3 cut(s)	465, 514, 892
BssECI	CCNNGG	3 cut(s)	165, 189, 411
BssMI	GATC	7 cut(s)	161, 180, 220, 628, 649, 835, 898
BssSI	CACGAG	1 cut(s)	861
BssT1I	CCWWGG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	861
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	4 cut(s)	27, 205, 538, 985
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	5 cut(s)	563, 706, 760, 858, 1020
BstDEI	CTNAG	4 cut(s)	515, 678, 687, 997
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	259, 706
BstFNI	CGCG	3 cut(s)	49, 51, 101
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	3 cut(s)	51, 344, 368
BstKTI	GATC	7 cut(s)	164, 183, 223, 631, 652, 838, 901
BstMAI	GTCTC	2 cut(s)	211, 964
BstMBI	GATC	7 cut(s)	161, 180, 220, 628, 649, 835, 898
BstMCI	CGRYCG	1 cut(s)	411
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 683, 764
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	1016
BstSLI	GKGCMC	1 cut(s)	769
BstUI	CGCG	3 cut(s)	49, 51, 101
BstV1I	GCAGC	4 cut(s)	29, 359, 481, 949
BstX2I	RGATCY	2 cut(s)	161, 835
BstYI	RGATCY	2 cut(s)	161, 835
BsuRI	GGCC	5 cut(s)	67, 178, 188, 846, 1022
BtgI	CCRYGG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	808
BtsCI	GGATG	2 cut(s)	259, 706
BtsIMutI	CAGTG	1 cut(s)	534
BtuMI	TCGCGA	1 cut(s)	101
Cac8I	GCNNGC	5 cut(s)	563, 706, 760, 858, 1020
CfoI	GCGC	3 cut(s)	51, 344, 368
Cfr13I	GGNCC	4 cut(s)	65, 196, 748, 844
CseI	GACGC	1 cut(s)	946
CviAII	CATG	3 cut(s)	190, 614, 802
DdeI	CTNAG	4 cut(s)	515, 678, 687, 997
DpnI	GATC	7 cut(s)	163, 182, 222, 630, 651, 837, 900
DpnII	GATC	7 cut(s)	161, 180, 220, 628, 649, 835, 898
DraI	TTTAAA	1 cut(s)	43
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	1022
Eco32I	GATATC	1 cut(s)	990
Eco47I	GGWCC	2 cut(s)	196, 748
Eco57I	CTGAAG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	844
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	164
EcoRV	GATATC	1 cut(s)	990
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	2 cut(s)	211, 964
FaeI	CATG	3 cut(s)	193, 617, 805
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	965
FatI	CATG	3 cut(s)	189, 613, 801
FauNDI	CATATG	3 cut(s)	500, 821, 904
FblI	GTMKAC	1 cut(s)	407
Fnu4HI	GCNGC	7 cut(s)	18, 81, 84, 345, 348, 470, 938
FokI	GGATG	2 cut(s)	246, 713
Fsp4HI	GCNGC	7 cut(s)	18, 81, 84, 345, 348, 470, 938
FspBI	CTAG	1 cut(s)	723
GlaI	GCGC	3 cut(s)	50, 343, 367
GluI	GCNGC	7 cut(s)	18, 81, 84, 345, 348, 470, 938
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	5 cut(s)	67, 178, 188, 846, 1022
HapII	CCGG	2 cut(s)	71, 776
HgaI	GACGC	1 cut(s)	946
HhaI	GCGC	3 cut(s)	51, 344, 368
Hin1II	CATG	3 cut(s)	193, 617, 805
Hin6I	GCGC	3 cut(s)	49, 342, 366
HinP1I	GCGC	3 cut(s)	49, 342, 366
HincII	GTYRAC	2 cut(s)	284, 408
HindII	GTYRAC	2 cut(s)	284, 408
HindIII	AAGCTT	2 cut(s)	376, 854
HinfI	GANTC	2 cut(s)	59, 553
HpaII	CCGG	2 cut(s)	71, 776
HphI	GGTGA	4 cut(s)	22, 118, 611, 997
Hpy166II	GTNNAC	4 cut(s)	284, 408, 476, 767
Hpy188I	TCNGA	2 cut(s)	397, 840
Hpy188III	TCNNGA	5 cut(s)	100, 525, 593, 626, 776
Hpy8I	GTNNAC	4 cut(s)	284, 408, 476, 767
Hpy99I	CGWCG	3 cut(s)	31, 56, 79
HpyAV	CCTTC	5 cut(s)	97, 773, 835, 937, 942
HpyCH4III	ACNGT	4 cut(s)	27, 205, 538, 985
HpyCH4IV	ACGT	2 cut(s)	54, 807
HpyCH4V	TGCA	7 cut(s)	296, 565, 656, 767, 860, 937, 1018
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 683, 764
HpyF3I	CTNAG	4 cut(s)	515, 678, 687, 997
HpySE526I	ACGT	2 cut(s)	54, 807
Hsp92II	CATG	3 cut(s)	193, 617, 805
HspAI	GCGC	3 cut(s)	49, 342, 366
Kpn2I	TCCGGA	1 cut(s)	775
Kzo9I	GATC	7 cut(s)	161, 180, 220, 628, 649, 835, 898
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	4 cut(s)	29, 359, 481, 949
LweI	GCATC	3 cut(s)	691, 717, 745
MaeI	CTAG	1 cut(s)	723
MaeII	ACGT	2 cut(s)	54, 807
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	7 cut(s)	163, 182, 222, 630, 651, 837, 900
MboI	GATC	7 cut(s)	161, 180, 220, 628, 649, 835, 898
MboII	GAAGA	2 cut(s)	294, 681
MflI	RGATCY	2 cut(s)	161, 835
MhlI	GDGCHC	1 cut(s)	769
MluCI	AATT	2 cut(s)	418, 672
MlyI	GAGTC	1 cut(s)	562
MroI	TCCGGA	1 cut(s)	775
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	4 cut(s)	42, 126, 234, 728
MslI	CAYNNNNRTG	2 cut(s)	444, 806
MspI	CCGG	2 cut(s)	71, 776
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	3 cut(s)	49, 51, 101
MwoI	GCNNNNNNNGC	3 cut(s)	80, 683, 764
NcoI	CCATGG	1 cut(s)	189
NdeI	CATATG	3 cut(s)	500, 821, 904
NdeII	GATC	7 cut(s)	161, 180, 220, 628, 649, 835, 898
NlaIII	CATG	3 cut(s)	193, 617, 805
NlaIV	GGNNCC	2 cut(s)	163, 837
NmuCI	GTSAC	1 cut(s)	599
NruI	TCGCGA	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	383
PceI	AGGCCT	1 cut(s)	1022
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	956
PkrI	GCNGC	7 cut(s)	19, 82, 85, 346, 349, 471, 939
PleI	GAGTC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	561
PshBI	ATTAAT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	163, 837
PspPI	GGNCC	4 cut(s)	65, 196, 748, 844
PstI	CTGCAG	1 cut(s)	1020
PsuI	RGATCY	2 cut(s)	161, 835
PsyI	GACNNNGTC	1 cut(s)	956
RruI	TCGCGA	1 cut(s)	101
RseI	CAYNNNNRTG	2 cut(s)	444, 806
SalI	GTCGAC	1 cut(s)	406
SaqAI	TTAA	4 cut(s)	42, 126, 234, 728
SatI	GCNGC	7 cut(s)	18, 81, 84, 345, 348, 470, 938
Sau3AI	GATC	7 cut(s)	161, 180, 220, 628, 649, 835, 898
Sau96I	GGNCC	4 cut(s)	65, 196, 748, 844
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	769
SfaNI	GCATC	3 cut(s)	691, 717, 745
SfcI	CTRYAG	1 cut(s)	1016
SfuI	TTCGAA	1 cut(s)	383
SinI	GGWCC	2 cut(s)	196, 748
SmiMI	CAYNNNNRTG	2 cut(s)	444, 806
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	2 cut(s)	418, 672
SseBI	AGGCCT	1 cut(s)	1022
SsiI	CCGC	7 cut(s)	47, 80, 83, 147, 345, 449, 698
SspMI	CTAG	1 cut(s)	723
StuI	AGGCCT	1 cut(s)	1022
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	4 cut(s)	27, 205, 538, 985
TaiI	ACGT	2 cut(s)	57, 810
TaqI	TCGA	3 cut(s)	29, 383, 407
TaqII	GACCGA	2 cut(s)	425, 765
TasI	AATT	2 cut(s)	418, 672
TauI	GCSGC	3 cut(s)	83, 86, 347
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	4 cut(s)	42, 126, 234, 728
Tru9I	TTAA	4 cut(s)	42, 126, 234, 728
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	4 cut(s)	17, 347, 469, 937
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	5 cut(s)	17, 242, 248, 311, 790
TspRI	CASTG	1 cut(s)	541
Tth111I	GACNNNGTC	1 cut(s)	956
VneI	GTGCAC	1 cut(s)	765
VpaK11BI	GGWCC	2 cut(s)	196, 748
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.