Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Forward (+)

27880155 .. 27883682

Gene Structure 3528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1297000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGAACCCGGAAAACATTGTGTGGCATAAGTGCTCGGTGGAGAAACTTGATAGGCAACAATTACTTAAGCAGAAAGGCTGTGTCATATGGATTACTGGTTTAAGTGGTTCAGGAAAAAGCACTGTGGCATGTGCTTTGAGTCAAGGCTTGCACATGAGAGGAAGGCTAACCTACATACTTGATGGTGACAACGTTCGTCATGGTCTAAATCGTGATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGCCGAGGTAGCTAAGCTCTTTGCGGATGCTGGCGTCATTTGTATTGCTAGCTTAATATCTCCCTACGGAAAGGACCGAGATGCCTGCCGTGCATTATTTCCTGAAGGAGATTTTATTGAGGTGTACATGGACGTGCCGCTGCACGTGTGTGAGAATAGGGACCCAAAGGGACTCTACAAGCTTGCACGAGCTGGAAAAATCAAAGGCTTTACAGGGGTTGATGATCCATATGAGCCACCATTAAAGTGTGAGATAGTATTGCAGCAGAAGGGTACGGATTGTGTCACCCCAGGCGAGATGGCTGAAACCGTGATATCATATTTGGAGGAGAAAGGGTATCTGCAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

205

Amino Acids

22.67

Weight (kDa)

6.12

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	26 - 175	7.8e-70	Adenylylsulphate kinase
AAA_33	PF13671	29 - 141	3.8e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	287, 401
AclI	AACGTT	1 cut(s)	195
AclWI	GGATC	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	387
AcvI	CACGTG	1 cut(s)	409
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	2 cut(s)	389, 538
AflII	CTTAAG	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	1 cut(s)	229
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	553
AleI	CACNNNNGTG	1 cut(s)	411
AluBI	AGCT	5 cut(s)	275, 280, 315, 445, 455
AluI	AGCT	5 cut(s)	275, 280, 315, 445, 455
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	482
ApeKI	GCWGC	2 cut(s)	403, 526
AspS9I	GGNCC	2 cut(s)	337, 424
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	200, 541
AsuNHI	GCTAGC	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	337, 424
BauI	CACGAG	1 cut(s)	450
BbrPI	CACGTG	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	390, 538
BccI	CCATC	2 cut(s)	179, 556
BceAI	ACGGC	1 cut(s)	336
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BciT130I	CCWGG	1 cut(s)	555
BcnI	CCSGG	1 cut(s)	11
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	605
BfrI	CTTAAG	1 cut(s)	68
BisI	GCNGC	3 cut(s)	401, 404, 527
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	3 cut(s)	402, 405, 528
Bme1390I	CCNGG	2 cut(s)	11, 555
Bme18I	GGWCC	2 cut(s)	337, 424
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	337, 424
BmiI	GGNNCC	2 cut(s)	425, 426
BmrFI	CCNGG	2 cut(s)	11, 555
BmsI	GCATC	2 cut(s)	280, 334
BmtI	GCTAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	11
BsaAI	YACGTR	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	267, 553
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	267, 553
BseGI	GGATG	1 cut(s)	295
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	2 cut(s)	390, 538
BsgI	GTGCAG	2 cut(s)	264, 389
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	437, 447
BsmFI	GGGAC	2 cut(s)	437, 447
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	217, 238, 487
Bsp1720I	GCTNAGC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	287, 401
BspLI	GGNNCC	2 cut(s)	425, 426
BspMAI	CTGCAG	1 cut(s)	609
BspOI	GCTAGC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	482
BspTI	CTTAAG	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	267, 553
BssMI	GATC	3 cut(s)	217, 238, 487
BssNI	GRCGYC	1 cut(s)	297
BssSI	CACGAG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	127, 574
BstACI	GRCGYC	1 cut(s)	297
BstAFI	CTTAAG	1 cut(s)	68
BstAUI	TGTACA	1 cut(s)	387
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	6 cut(s)	152, 295, 313, 349, 447, 609
BstDEI	CTNAG	2 cut(s)	221, 276
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	3 cut(s)	220, 241, 490
BstMBI	GATC	3 cut(s)	217, 238, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 353
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	1 cut(s)	135
BstSCI	CCNGG	2 cut(s)	9, 553
BstSFI	CTRYAG	1 cut(s)	605
BstV1I	GCAGC	2 cut(s)	390, 538
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	6 cut(s)	152, 295, 313, 349, 447, 609
Cfr13I	GGNCC	2 cut(s)	337, 424
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	388, 537
CviAII	CATG	4 cut(s)	132, 157, 203, 391
CviQI	GTAC	2 cut(s)	388, 537
DdeI	CTNAG	2 cut(s)	221, 276
DpnI	GATC	3 cut(s)	219, 240, 489
DpnII	GATC	3 cut(s)	217, 238, 487
Eco32I	GATATC	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	337, 424
Eco57I	CTGAAG	1 cut(s)	387
Eco72I	CACGTG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	553
EcoRV	GATATC	1 cut(s)	579
FaeI	CATG	4 cut(s)	135, 160, 206, 394
FaqI	GGGAC	2 cut(s)	437, 447
FatI	CATG	4 cut(s)	131, 156, 202, 390
FauNDI	CATATG	2 cut(s)	89, 493
Fnu4HI	GCNGC	3 cut(s)	401, 404, 527
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	401, 404, 527
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	3 cut(s)	401, 404, 527
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	4 cut(s)	135, 160, 206, 394
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	2 cut(s)	142, 435
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	2 cut(s)	200, 541
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188III	TCNNGA	3 cut(s)	114, 215, 365
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	3 cut(s)	159, 362, 526
HpyCH4III	ACNGT	2 cut(s)	127, 574
HpyCH4IV	ACGT	3 cut(s)	195, 396, 408
HpyCH4V	TGCA	7 cut(s)	154, 245, 356, 406, 449, 526, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 353
HpyF3I	CTNAG	2 cut(s)	221, 276
HpySE526I	ACGT	3 cut(s)	195, 396, 408
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	4 cut(s)	135, 160, 206, 394
KflI	GGGWCCC	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	217, 238, 487
Lsp1109I	GCAGC	2 cut(s)	390, 538
LweI	GCATC	2 cut(s)	280, 334
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	3 cut(s)	195, 396, 408
MaeIII	GTNAC	2 cut(s)	188, 547
MalI	GATC	3 cut(s)	219, 240, 489
MboI	GATC	3 cut(s)	217, 238, 487
MboII	GAAGA	2 cut(s)	248, 270
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	62, 261
MlyI	GAGTC	2 cut(s)	151, 429
MnlI	CCTC	4 cut(s)	155, 262, 376, 583
MseI	TTAA	4 cut(s)	69, 104, 317, 506
MslI	CAYNNNNRTG	3 cut(s)	395, 411, 508
MspA1I	CMGCKG	1 cut(s)	403
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	11, 555
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	2 cut(s)	272, 353
NciI	CCSGG	1 cut(s)	11
NdeI	CATATG	2 cut(s)	89, 493
NdeII	GATC	3 cut(s)	217, 238, 487
NheI	GCTAGC	1 cut(s)	311
NlaIII	CATG	4 cut(s)	135, 160, 206, 394
NlaIV	GGNNCC	2 cut(s)	425, 426
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	2 cut(s)	188, 547
NspI	RCATGY	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	411
PkrI	GCNGC	3 cut(s)	402, 405, 528
PleI	GAGTC	2 cut(s)	150, 429
PmaCI	CACGTG	1 cut(s)	409
PmlI	CACGTG	1 cut(s)	409
PpsI	GAGTC	2 cut(s)	150, 429
Ppu21I	YACGTR	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	424
Psp1406I	AACGTT	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	553
PspCI	CACGTG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	425, 426
PspPI	GGNCC	2 cut(s)	337, 424
PspPPI	RGGWCCY	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	609
RsaI	GTAC	2 cut(s)	389, 538
RsaNI	GTAC	2 cut(s)	388, 537
RseI	CAYNNNNRTG	3 cut(s)	395, 411, 508
SaqAI	TTAA	4 cut(s)	69, 104, 317, 506
SatI	GCNGC	3 cut(s)	401, 404, 527
Sau3AI	GATC	3 cut(s)	217, 238, 487
Sau96I	GGNCC	2 cut(s)	337, 424
SchI	GAGTC	2 cut(s)	151, 429
ScrFI	CCNGG	2 cut(s)	11, 555
SduI	GDGCHC	1 cut(s)	38
SfaNI	GCATC	2 cut(s)	280, 334
SfcI	CTRYAG	1 cut(s)	605
SinI	GGWCC	2 cut(s)	337, 424
SmiMI	CAYNNNNRTG	3 cut(s)	395, 411, 508
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	62, 261
SsiI	CCGC	2 cut(s)	287, 401
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	9, 553
TaaI	ACNGT	2 cut(s)	127, 574
TaiI	ACGT	3 cut(s)	198, 399, 411
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	62, 261
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	403
Tru1I	TTAA	4 cut(s)	69, 104, 317, 506
Tru9I	TTAA	4 cut(s)	69, 104, 317, 506
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	188, 547
TseI	GCWGC	2 cut(s)	403, 526
Tsp45I	GTSAC	2 cut(s)	188, 547
TspGWI	ACGGA	2 cut(s)	345, 554
TspRI	CASTG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	337, 424
XceI	RCATGY	1 cut(s)	135
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.