Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Forward (+)

18377977 .. 18381584

Gene Structure 3608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G015750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAATGTGGTGAAAGCAGCTCCACCGTCGATTTGTGGCTTTAAACCGCGCGACGTTGAATCTGGGCCGGCGGCGGCGAAGTTGGGGTTCGCGAAGGTGAATGAGAGCAATGCGATTAAGAGCTTGGGTTTGAGTTGCGGAGTTGATGTAGGATCCAGGGGTTTGAGGCCGATCAAGGCCATGGAGGACCAAACCGTCTCTGTGAAAACTGATCGCTCCGCCATTAATGGTAAAAATCTCCGCCAGATGTCAACCGAGGGGAATTCAACGAACATCGTGTGGCATAAATGTGCGGTGGAGAAACTGGATAGGCAGCGTTTACTTCAGCAGAAAGGCTGTGTCATATGGATTACTGGTCTTAGTGGTTCAGGAAAAAGCACTGTGGCGTGTGCTTTGAGTCAAGGCTTGCACTTGAGGGGAAAGCTGACCTACATTCTTGATGGTGACAATGTTCGGCATGGTCTAAATCGTGATCTTGGTTTCAACGCAGAGGATCGTGCAGAAAACATACGAAGAATTGCTGAGGTCGCTAAGCTGTTTGCGGATGCTGGCATCATTTGTATTGCTAGTTTAATATCTCCTTACCGAAAGGACCGAGATGCCTGCCGTGCACTATTTCCGGAAGGAGATTTTATTGAGGTGTTCATGGATGTGCCACTCAACATATGTGAGAATAGGGATCCGAAGGGCCTCTACAAGCTTGCACGAGCTGGAAAAATCAAAGGTTTTACTGGGGTTGATGATCCATATGAGCCACCACTAAACTGCGAGATAGTGTTGCAGCAGAAGGGAAGGGACTGCGTCTCCCCAAGTAGTATGGCTGAAACGGTGGTATCTTACTTAGAGGAGAAAGGGTATCTGCAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

289

Amino Acids

31.43

Weight (kDa)

8.75

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	111 - 260	2.9e-70	Adenylylsulphate kinase
AAA_33	PF13671	114 - 226	3.7e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AccII	CGCG	3 cut(s)	49, 51, 92
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	8 cut(s)	47, 71, 74, 138, 219, 241, 293, 542
AclWI	GGATC	6 cut(s)	147, 160, 501, 674, 687, 737
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	59, 267, 484
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	6 cut(s)	20, 123, 424, 535, 700, 710
AluI	AGCT	6 cut(s)	20, 123, 424, 535, 700, 710
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	2 cut(s)	202, 808
Alw44I	GTGCAC	1 cut(s)	609
AlwI	GGATC	6 cut(s)	147, 160, 501, 674, 687, 737
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	5 cut(s)	65, 167, 177, 688, 864
ApaLI	GTGCAC	1 cut(s)	609
ApeKI	GCWGC	3 cut(s)	17, 313, 781
ApoI	RAATTY	1 cut(s)	262
AseI	ATTAAT	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	4 cut(s)	65, 187, 592, 688
AsuHPI	GGTGA	3 cut(s)	22, 109, 455
AvaII	GGWCC	2 cut(s)	187, 592
BaeGI	GKGCMC	1 cut(s)	613
BaeI	ACNNNNGTAYC	2 cut(s)	816, 849
BamHI	GGATCC	2 cut(s)	152, 679
BarI	GAAGNNNNNNTAC	2 cut(s)	677, 709
BauI	CACGAG	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	613
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	3 cut(s)	29, 325, 793
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	591
BcgI	CGANNNNNNTGC	2 cut(s)	585, 619
BciT130I	CCWGG	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	202, 808
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	860
BisI	GCNGC	5 cut(s)	18, 72, 75, 314, 782
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	5 cut(s)	19, 73, 76, 315, 783
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	2 cut(s)	187, 592
BmgT120I	GGNCC	4 cut(s)	65, 187, 592, 688
BmiI	GGNNCC	2 cut(s)	154, 681
BmrFI	CCNGG	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	741
BmsI	GCATC	3 cut(s)	535, 561, 589
BmuI	ACTGGG	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu1102I	GCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	433
BsaJI	CCNNGG	3 cut(s)	156, 180, 255
BsaWI	WCCGGW	1 cut(s)	619
BsaXI	ACNNNNNCTCC	6 cut(s)	132, 162, 788, 818, 839, 869
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	3 cut(s)	309, 358, 736
Bse3DI	GCAATG	1 cut(s)	115
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	3 cut(s)	156, 180, 255
BseGI	GGATG	2 cut(s)	550, 655
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	3 cut(s)	309, 358, 736
BseRI	GAGGAG	1 cut(s)	860
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	3 cut(s)	29, 325, 793
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	3 cut(s)	49, 51, 92
BshFI	GGCC	5 cut(s)	67, 169, 179, 690, 866
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	2 cut(s)	68, 620
BslFI	GGGAC	1 cut(s)	809
BsmAI	GTCTC	2 cut(s)	202, 808
BsmBI	CGTCTC	2 cut(s)	202, 808
BsmFI	GGGAC	1 cut(s)	809
BsnI	GGCC	5 cut(s)	67, 169, 179, 690, 866
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	7 cut(s)	152, 171, 211, 472, 493, 679, 742
Bsp1720I	GCTNAGC	1 cut(s)	531
Bsp19I	CCATGG	1 cut(s)	180
Bsp68I	TCGCGA	1 cut(s)	92
BspACI	CCGC	8 cut(s)	47, 71, 74, 138, 219, 241, 293, 542
BspANI	GGCC	5 cut(s)	67, 169, 179, 690, 866
BspCNI	CTCAG	1 cut(s)	514
BspEI	TCCGGA	1 cut(s)	619
BspFNI	CGCG	3 cut(s)	49, 51, 92
BspLI	GGNNCC	2 cut(s)	154, 681
BspMAI	CTGCAG	1 cut(s)	864
BspPI	GGATC	6 cut(s)	147, 160, 501, 674, 687, 737
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	3 cut(s)	309, 358, 736
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	3 cut(s)	156, 180, 255
BssMI	GATC	7 cut(s)	152, 171, 211, 472, 493, 679, 742
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	4 cut(s)	27, 196, 382, 829
BstC8I	GCNNGC	6 cut(s)	69, 407, 550, 604, 702, 864
BstDEI	CTNAG	4 cut(s)	359, 522, 531, 841
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	550, 655
BstFNI	CGCG	3 cut(s)	49, 51, 92
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	7 cut(s)	155, 174, 214, 475, 496, 682, 745
BstMAI	GTCTC	2 cut(s)	202, 808
BstMBI	GATC	7 cut(s)	152, 171, 211, 472, 493, 679, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 608
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	860
BstSLI	GKGCMC	1 cut(s)	613
BstUI	CGCG	3 cut(s)	49, 51, 92
BstV1I	GCAGC	3 cut(s)	29, 325, 793
BstX2I	RGATCY	2 cut(s)	152, 679
BstYI	RGATCY	2 cut(s)	152, 679
BsuRI	GGCC	5 cut(s)	67, 169, 179, 690, 866
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	550, 655
BtsIMutI	CAGTG	1 cut(s)	378
BtuMI	TCGCGA	1 cut(s)	92
Cac8I	GCNNGC	6 cut(s)	69, 407, 550, 604, 702, 864
CfoI	GCGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	4 cut(s)	65, 187, 592, 688
CseI	GACGC	1 cut(s)	790
CviAII	CATG	3 cut(s)	181, 458, 646
DdeI	CTNAG	4 cut(s)	359, 522, 531, 841
DpnI	GATC	7 cut(s)	154, 173, 213, 474, 495, 681, 744
DpnII	GATC	7 cut(s)	152, 171, 211, 472, 493, 679, 742
DraI	TTTAAA	1 cut(s)	43
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
EciI	GGCGGA	2 cut(s)	208, 230
Eco130I	CCWWGG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	866
Eco47I	GGWCC	2 cut(s)	187, 592
Eco57I	CTGAAG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	688
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	2 cut(s)	202, 808
FaeI	CATG	3 cut(s)	184, 461, 649
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	3 cut(s)	180, 457, 645
FauNDI	CATATG	3 cut(s)	344, 665, 748
Fnu4HI	GCNGC	5 cut(s)	18, 72, 75, 314, 782
FokI	GGATG	2 cut(s)	557, 662
Fsp4HI	GCNGC	5 cut(s)	18, 72, 75, 314, 782
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	5 cut(s)	18, 72, 75, 314, 782
HaeIII	GGCC	5 cut(s)	67, 169, 179, 690, 866
HapII	CCGG	2 cut(s)	68, 620
HgaI	GACGC	1 cut(s)	790
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	184, 461, 649
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	2 cut(s)	59, 397
HpaII	CCGG	2 cut(s)	68, 620
HphI	GGTGA	3 cut(s)	22, 109, 455
Hpy166II	GTNNAC	3 cut(s)	252, 320, 611
Hpy188I	TCNGA	1 cut(s)	684
Hpy188III	TCNNGA	5 cut(s)	91, 369, 437, 470, 620
Hpy8I	GTNNAC	3 cut(s)	252, 320, 611
Hpy99I	CGWCG	2 cut(s)	31, 56
HpyAV	CCTTC	5 cut(s)	88, 617, 679, 781, 786
HpyCH4III	ACNGT	4 cut(s)	27, 196, 382, 829
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	6 cut(s)	409, 500, 611, 704, 781, 862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 608
HpyF3I	CTNAG	4 cut(s)	359, 522, 531, 841
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	184, 461, 649
HspAI	GCGC	1 cut(s)	49
Kpn2I	TCCGGA	1 cut(s)	619
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Kzo9I	GATC	7 cut(s)	152, 171, 211, 472, 493, 679, 742
LmnI	GCTCC	2 cut(s)	25, 221
Lsp1109I	GCAGC	3 cut(s)	29, 325, 793
LweI	GCATC	3 cut(s)	535, 561, 589
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	7 cut(s)	154, 173, 213, 474, 495, 681, 744
MboI	GATC	7 cut(s)	152, 171, 211, 472, 493, 679, 742
MboII	GAAGA	1 cut(s)	525
MflI	RGATCY	2 cut(s)	152, 679
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	2 cut(s)	262, 516
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	9 cut(s)	159, 178, 250, 408, 484, 517, 631, 701, 838
MroI	TCCGGA	1 cut(s)	619
MroNI	GCCGGC	1 cut(s)	67
MseI	TTAA	4 cut(s)	42, 117, 225, 572
MslI	CAYNNNNRTG	2 cut(s)	288, 650
MspI	CCGG	2 cut(s)	68, 620
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	3 cut(s)	49, 51, 92
MwoI	GCNNNNNNNGC	2 cut(s)	527, 608
NaeI	GCCGGC	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	180
NdeI	CATATG	3 cut(s)	344, 665, 748
NdeII	GATC	7 cut(s)	152, 171, 211, 472, 493, 679, 742
NgoMIV	GCCGGC	1 cut(s)	67
NlaIII	CATG	3 cut(s)	184, 461, 649
NlaIV	GGNNCC	2 cut(s)	154, 681
NmuCI	GTSAC	1 cut(s)	443
NruI	TCGCGA	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	866
PdiI	GCCGGC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	800
PkrI	GCNGC	5 cut(s)	19, 73, 76, 315, 783
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PshBI	ATTAAT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	154, 681
PspPI	GGNCC	4 cut(s)	65, 187, 592, 688
PstI	CTGCAG	1 cut(s)	864
PsuI	RGATCY	2 cut(s)	152, 679
PsyI	GACNNNGTC	1 cut(s)	800
RruI	TCGCGA	1 cut(s)	92
RseI	CAYNNNNRTG	2 cut(s)	288, 650
SaqAI	TTAA	4 cut(s)	42, 117, 225, 572
SatI	GCNGC	5 cut(s)	18, 72, 75, 314, 782
Sau3AI	GATC	7 cut(s)	152, 171, 211, 472, 493, 679, 742
Sau96I	GGNCC	4 cut(s)	65, 187, 592, 688
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	3 cut(s)	535, 561, 589
SfcI	CTRYAG	1 cut(s)	860
SinI	GGWCC	2 cut(s)	187, 592
SmiMI	CAYNNNNRTG	2 cut(s)	288, 650
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	2 cut(s)	262, 516
SseBI	AGGCCT	1 cut(s)	866
SsiI	CCGC	8 cut(s)	47, 71, 74, 138, 219, 241, 293, 542
SspMI	CTAG	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	866
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	4 cut(s)	27, 196, 382, 829
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	29
TaqII	GACCGA	1 cut(s)	609
TasI	AATT	2 cut(s)	262, 516
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	4 cut(s)	42, 117, 225, 572
Tru9I	TTAA	4 cut(s)	42, 117, 225, 572
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	3 cut(s)	17, 313, 781
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	2 cut(s)	17, 634
TspRI	CASTG	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	800
VneI	GTGCAC	1 cut(s)	609
VpaK11BI	GGWCC	2 cut(s)	187, 592
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	1 cut(s)	262
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.