Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Forward (+)

19309433 .. 19313104

Gene Structure 3672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017631

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAATGTGGTGAAATCAGCTCCACCGTCGATTTGTGGCTTTAAACCGCAAGACGTTGAATCTGGACCTCCGGCGACGGCGACGGCGGCGGCGAAGTTGGGGTTCGTGAAGGTGAATGAGAGCAATGCGATTAAGAGCTTGGGTTTGAGTTGCGGAGTTGATGTAGGATCCAGGGGTTTAAGGCCGATTAAGGCCATGGAGGACCAAACCGTCTCTGTGAAAACTGATCGCTCTGCCATTAATGGTAAAAATCACCGCCAGATGTCGACTGCGGGGAATTCAACGAACATCGTGTGGCATAAATGTGCGGTCGAGAAACTGGATAGGCAGCGTTTACTTCAGCAGAAGGGCTGTGTCATATGGATTACTGGTCTTAGTGGTTCAGGAAAAAGCACTGTGGCGTGTGCTTTGAGTCAAGGCTTGCACTTGAGAGGAAAGCTGACCTACATTCTTGATGGTGACAACGTTCGGCACGGTCTAAATCGTGATCTTGGTTTCAACGCCGAGGATCGTGCAGAAAACATACGAAGAATTGCTGAGGTCGCTAAGCTGTTTGCGGATGCTGGCATCATTTGTATTGCTAGTTTAATATCTCCTTACCGAAAGGACCGAGATGCCTGCCGTGCACTATTTCCGGAAGGAGATTTTATTGAGGTGTTCATGGACGTGCCACTCAACATATGTGAGAATAGGGATCCGAAGGGCCTCTACAAGCTTGCACGAGCTGGAAAAATCAAAGGTTTTACTGGGGTTGATGATCCATATGAGCCACCACTAAACTGCGAGATAGTGTTGCAGCAGAACGGAAGGGACTGCGTCTCCCCAAGTAGTATGGCTGAAACGGTGATATCTTACTTAGAGGAGAAAGGGTATCTGCAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

295

Amino Acids

31.85

Weight (kDa)

8.63

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	116 - 265	3.1e-70	Adenylylsulphate kinase
AAA_33	PF13671	119 - 231	3.9e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	266
AccIII	TCCGGA	1 cut(s)	634
AciI	CCGC	8 cut(s)	47, 86, 89, 153, 256, 272, 308, 557
AclI	AACGTT	1 cut(s)	465
AclWI	GGATC	6 cut(s)	162, 175, 516, 689, 702, 752
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	59, 282, 499
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	6 cut(s)	20, 138, 439, 550, 715, 725
AluI	AGCT	6 cut(s)	20, 138, 439, 550, 715, 725
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	217, 823
Alw44I	GTGCAC	1 cut(s)	624
AlwI	GGATC	6 cut(s)	162, 175, 516, 689, 702, 752
Aor13HI	TCCGGA	1 cut(s)	634
AoxI	GGCC	4 cut(s)	182, 192, 703, 879
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	2 cut(s)	328, 796
ApoI	RAATTY	1 cut(s)	277
AseI	ATTAAT	1 cut(s)	240
AspS9I	GGNCC	4 cut(s)	65, 202, 607, 703
AsuHPI	GGTGA	5 cut(s)	22, 124, 245, 470, 856
AvaII	GGWCC	3 cut(s)	65, 202, 607
BaeGI	GKGCMC	1 cut(s)	628
BamHI	GGATCC	2 cut(s)	167, 694
BarI	GAAGNNNNNNTAC	2 cut(s)	692, 724
BauI	CACGAG	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	628
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	340, 808
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	3 cut(s)	93, 99, 606
BcgI	CGANNNNNNTGC	4 cut(s)	494, 528, 600, 634
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	217, 823
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	875
BisI	GCNGC	4 cut(s)	87, 90, 329, 797
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	4 cut(s)	88, 91, 330, 798
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	3 cut(s)	65, 202, 607
BmgBI	CACGTC	1 cut(s)	667
BmgT120I	GGNCC	4 cut(s)	65, 202, 607, 703
BmiI	GGNNCC	2 cut(s)	169, 696
BmrFI	CCNGG	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	3 cut(s)	550, 576, 604
BmuI	ACTGGG	1 cut(s)	756
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	448
BsaJI	CCNNGG	3 cut(s)	171, 195, 504
BsaWI	WCCGGW	1 cut(s)	634
BsaXI	ACNNNNNCTCC	6 cut(s)	147, 177, 803, 833, 854, 884
Bse1I	ACTGG	3 cut(s)	324, 373, 751
Bse3DI	GCAATG	1 cut(s)	130
BseAI	TCCGGA	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	171, 195, 504
BseGI	GGATG	1 cut(s)	565
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	3 cut(s)	324, 373, 751
BseRI	GAGGAG	1 cut(s)	875
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	2 cut(s)	340, 808
BsgI	GTGCAG	1 cut(s)	534
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	4 cut(s)	184, 194, 705, 881
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	2 cut(s)	71, 635
BslFI	GGGAC	1 cut(s)	824
BsmAI	GTCTC	2 cut(s)	217, 823
BsmBI	CGTCTC	2 cut(s)	217, 823
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	4 cut(s)	184, 194, 705, 881
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp13I	TCCGGA	1 cut(s)	634
Bsp143I	GATC	6 cut(s)	167, 226, 487, 508, 694, 757
Bsp1720I	GCTNAGC	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	8 cut(s)	47, 86, 89, 153, 256, 272, 308, 557
BspANI	GGCC	4 cut(s)	184, 194, 705, 881
BspCNI	CTCAG	1 cut(s)	529
BspEI	TCCGGA	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	169, 696
BspMAI	CTGCAG	1 cut(s)	879
BspPI	GGATC	6 cut(s)	162, 175, 516, 689, 702, 752
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	3 cut(s)	324, 373, 751
BssECI	CCNNGG	3 cut(s)	171, 195, 504
BssMI	GATC	6 cut(s)	167, 226, 487, 508, 694, 757
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	5 cut(s)	27, 211, 397, 476, 844
BstC8I	GCNNGC	5 cut(s)	422, 565, 619, 717, 879
BstDEI	CTNAG	4 cut(s)	374, 537, 546, 856
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	565
BstKTI	GATC	6 cut(s)	170, 229, 490, 511, 697, 760
BstMAI	GTCTC	2 cut(s)	217, 823
BstMBI	GATC	6 cut(s)	167, 226, 487, 508, 694, 757
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 542, 623
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	875
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	2 cut(s)	340, 808
BstX2I	RGATCY	2 cut(s)	167, 694
BstYI	RGATCY	2 cut(s)	167, 694
BsuRI	GGCC	4 cut(s)	184, 194, 705, 881
BtgI	CCRYGG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	667
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	5 cut(s)	422, 565, 619, 717, 879
Cfr13I	GGNCC	4 cut(s)	65, 202, 607, 703
CseI	GACGC	1 cut(s)	805
CviAII	CATG	2 cut(s)	196, 661
DdeI	CTNAG	4 cut(s)	374, 537, 546, 856
DpnI	GATC	6 cut(s)	169, 228, 489, 510, 696, 759
DpnII	GATC	6 cut(s)	167, 226, 487, 508, 694, 757
DraI	TTTAAA	1 cut(s)	43
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	881
Eco32I	GATATC	1 cut(s)	849
Eco47I	GGWCC	3 cut(s)	65, 202, 607
Eco57I	CTGAAG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	703
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	2 cut(s)	217, 823
FaeI	CATG	2 cut(s)	199, 664
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	2 cut(s)	195, 660
FauI	CCCGC	1 cut(s)	265
FauNDI	CATATG	3 cut(s)	359, 680, 763
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	4 cut(s)	87, 90, 329, 797
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	4 cut(s)	87, 90, 329, 797
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	4 cut(s)	87, 90, 329, 797
HaeIII	GGCC	4 cut(s)	184, 194, 705, 881
HapII	CCGG	2 cut(s)	71, 635
HgaI	GACGC	1 cut(s)	805
Hin1II	CATG	2 cut(s)	199, 664
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	2 cut(s)	59, 412
HpaII	CCGG	2 cut(s)	71, 635
HphI	GGTGA	5 cut(s)	22, 124, 245, 470, 856
Hpy166II	GTNNAC	3 cut(s)	267, 335, 626
Hpy188I	TCNGA	1 cut(s)	699
Hpy188III	TCNNGA	7 cut(s)	63, 106, 313, 384, 452, 485, 635
Hpy8I	GTNNAC	3 cut(s)	267, 335, 626
Hpy99I	CGWCG	3 cut(s)	31, 79, 85
HpyAV	CCTTC	5 cut(s)	103, 340, 632, 694, 801
HpyCH4III	ACNGT	5 cut(s)	27, 211, 397, 476, 844
HpyCH4IV	ACGT	3 cut(s)	54, 465, 666
HpyCH4V	TGCA	6 cut(s)	424, 515, 626, 719, 796, 877
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 542, 623
HpyF3I	CTNAG	4 cut(s)	374, 537, 546, 856
HpySE526I	ACGT	3 cut(s)	54, 465, 666
Hsp92II	CATG	2 cut(s)	199, 664
Kpn2I	TCCGGA	1 cut(s)	634
Kzo9I	GATC	6 cut(s)	167, 226, 487, 508, 694, 757
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	2 cut(s)	340, 808
LweI	GCATC	3 cut(s)	550, 576, 604
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	3 cut(s)	54, 465, 666
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	6 cut(s)	169, 228, 489, 510, 696, 759
MboI	GATC	6 cut(s)	167, 226, 487, 508, 694, 757
MboII	GAAGA	1 cut(s)	540
MflI	RGATCY	2 cut(s)	167, 694
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	2 cut(s)	277, 531
MlyI	GAGTC	1 cut(s)	421
MnlI	CCTC	8 cut(s)	78, 193, 425, 499, 532, 646, 716, 853
MroI	TCCGGA	1 cut(s)	634
MseI	TTAA	6 cut(s)	42, 132, 179, 189, 240, 587
MslI	CAYNNNNRTG	2 cut(s)	303, 665
MspI	CCGG	2 cut(s)	71, 635
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	86, 542, 623
NcoI	CCATGG	1 cut(s)	195
NdeI	CATATG	3 cut(s)	359, 680, 763
NdeII	GATC	6 cut(s)	167, 226, 487, 508, 694, 757
NlaIII	CATG	2 cut(s)	199, 664
NlaIV	GGNNCC	2 cut(s)	169, 696
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	1 cut(s)	458
PceI	AGGCCT	1 cut(s)	881
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	815
PkrI	GCNGC	4 cut(s)	88, 91, 330, 798
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PshBI	ATTAAT	1 cut(s)	240
Psp1406I	AACGTT	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	169, 696
PspPI	GGNCC	4 cut(s)	65, 202, 607, 703
PstI	CTGCAG	1 cut(s)	879
PsuI	RGATCY	2 cut(s)	167, 694
PsyI	GACNNNGTC	1 cut(s)	815
RseI	CAYNNNNRTG	2 cut(s)	303, 665
SalI	GTCGAC	1 cut(s)	265
SaqAI	TTAA	6 cut(s)	42, 132, 179, 189, 240, 587
SatI	GCNGC	4 cut(s)	87, 90, 329, 797
Sau3AI	GATC	6 cut(s)	167, 226, 487, 508, 694, 757
Sau96I	GGNCC	4 cut(s)	65, 202, 607, 703
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	3 cut(s)	550, 576, 604
SfcI	CTRYAG	1 cut(s)	875
SinI	GGWCC	3 cut(s)	65, 202, 607
SmiMI	CAYNNNNRTG	2 cut(s)	303, 665
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	2 cut(s)	277, 531
SseBI	AGGCCT	1 cut(s)	881
SsiI	CCGC	8 cut(s)	47, 86, 89, 153, 256, 272, 308, 557
SspMI	CTAG	1 cut(s)	582
StuI	AGGCCT	1 cut(s)	881
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	5 cut(s)	27, 211, 397, 476, 844
TaiI	ACGT	3 cut(s)	57, 468, 669
TaqI	TCGA	3 cut(s)	29, 266, 312
TaqII	GACCGA	1 cut(s)	624
TasI	AATT	2 cut(s)	277, 531
TauI	GCSGC	2 cut(s)	89, 92
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	6 cut(s)	42, 132, 179, 189, 240, 587
Tru9I	TTAA	6 cut(s)	42, 132, 179, 189, 240, 587
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	2 cut(s)	328, 796
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	2 cut(s)	17, 649
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	1 cut(s)	400
Tth111I	GACNNNGTC	1 cut(s)	815
VneI	GTGCAC	1 cut(s)	624
VpaK11BI	GGWCC	3 cut(s)	65, 202, 607
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	266
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.