Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Reverse (-)

73295054 .. 73299409

Gene Structure 4356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAATGTGGTGAAAGCAGCTCCACCGTCGATTTGTGGCTTTAAACCGCGCGACGTTGAATCTGGACGTCCGGCGACGGCGGCTGCGAAGTCGGGGTTCGTGAAGGTGAATGAGAGCAATGCGATTAAGAGCTTGGGTTTGAGTTGCGGAGTTGATGTAGGATCCAGGGGTTTACGGCCGATTAAGGCCATGGAGGACCAAACCGTCTCTGTGAAAACTGATCGCTCTGCCATTAATGGTAAAAATCTCCGCCAGATGTCGACTGCGGGGAATTCAACGAACATCGTGTGGCATAAATGTGTGGTGGAGAAACTGGATAGGCAGCGTTTACTTCAGCAGAAAGGCTGTGTCATATGGATTACTGGTCTTAGTGGTTCAGGAAAAAGCACTGTGGCGTGTGCTTTGAGTCAAGGCTTGCACTTGAGAGGAAAGCTGACCTACATTCTTGATGGGGACAACGTTCGGCACGGTCTAAATCGTGATCTTGGTTTCAACGCAGAGGATCGTGCAGAAAACATACGAAGAATTGCTGAGGTCGCTAAGCTGTTTGCGGATGCTGGCATCATTTGTATTGCTAGTTTAATATCTCCTTACCGAAAGGACCGAGATGCCTGCCGTGCACTATTTCCGGAAGGAGATTTTATTGAGGTGTTCATGGACGTGCCACTCAACATATGTGAGAATAGGGATCCGAAGGGCCTCTACAAGCTTGCACGAGCTGGAAAAATCAAAGGTTTTACTGGGGTTGATGATCCATATGAGCCACCACTAAACTGCGAGATAGTGTTGCAGCAGAAGGGAAGGGACTGCGTCTCCCCAAGTAGTATGGCTGAAACGGTGATATCTTACTTAGAGGAGAAAGGGTATCTGCAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

292

Amino Acids

31.74

Weight (kDa)

8.96

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	114 - 263	3e-70	Adenylylsulphate kinase
AAA_33	PF13671	117 - 229	3.8e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AatII	GACGTC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	2 cut(s)	49, 51
AccIII	TCCGGA	1 cut(s)	628
AciI	CCGC	6 cut(s)	47, 80, 147, 250, 266, 551
AclI	AACGTT	1 cut(s)	459
AclWI	GGATC	6 cut(s)	156, 169, 510, 683, 696, 746
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	59, 276, 493
AjiI	CACGTC	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	6 cut(s)	20, 132, 433, 544, 709, 719
AluI	AGCT	6 cut(s)	20, 132, 433, 544, 709, 719
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	2 cut(s)	211, 817
Alw44I	GTGCAC	1 cut(s)	618
AlwI	GGATC	6 cut(s)	156, 169, 510, 683, 696, 746
Aor13HI	TCCGGA	1 cut(s)	628
AoxI	GGCC	4 cut(s)	176, 186, 697, 873
ApaLI	GTGCAC	1 cut(s)	618
ApeKI	GCWGC	4 cut(s)	17, 83, 322, 790
ApoI	RAATTY	1 cut(s)	271
AseI	ATTAAT	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	3 cut(s)	196, 601, 697
AsuHPI	GGTGA	3 cut(s)	22, 118, 850
AvaII	GGWCC	2 cut(s)	196, 601
BaeGI	GKGCMC	1 cut(s)	622
BamHI	GGATCC	2 cut(s)	161, 688
BarI	GAAGNNNNNNTAC	2 cut(s)	686, 718
BauI	CACGAG	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	622
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	29, 70, 334, 802
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	3 cut(s)	93, 191, 600
BcgI	CGANNNNNNTGC	2 cut(s)	594, 628
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	211, 817
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	869
BisI	GCNGC	5 cut(s)	18, 81, 84, 323, 791
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	5 cut(s)	19, 82, 85, 324, 792
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	2 cut(s)	196, 601
BmgBI	CACGTC	1 cut(s)	661
BmgT120I	GGNCC	3 cut(s)	196, 601, 697
BmiI	GGNNCC	2 cut(s)	163, 690
BmrFI	CCNGG	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	3 cut(s)	544, 570, 598
BmuI	ACTGGG	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	531
Bpu1102I	GCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	442
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	165, 189
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	6 cut(s)	141, 171, 797, 827, 848, 878
Bse1I	ACTGG	3 cut(s)	318, 367, 745
Bse3DI	GCAATG	1 cut(s)	124
BseAI	TCCGGA	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	165, 189
BseGI	GGATG	1 cut(s)	559
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	3 cut(s)	318, 367, 745
BseRI	GAGGAG	1 cut(s)	869
BseSI	GKGCMC	1 cut(s)	622
BseX3I	CGGCCG	1 cut(s)	176
BseXI	GCAGC	4 cut(s)	29, 70, 334, 802
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	2 cut(s)	49, 51
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	178, 188, 699, 875
BsiEI	CGRYCG	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	71, 629
BslFI	GGGAC	2 cut(s)	467, 818
BsmAI	GTCTC	2 cut(s)	211, 817
BsmBI	CGTCTC	2 cut(s)	211, 817
BsmFI	GGGAC	2 cut(s)	467, 818
BsnI	GGCC	4 cut(s)	178, 188, 699, 875
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp13I	TCCGGA	1 cut(s)	628
Bsp143I	GATC	6 cut(s)	161, 220, 481, 502, 688, 751
Bsp1720I	GCTNAGC	1 cut(s)	540
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	6 cut(s)	47, 80, 147, 250, 266, 551
BspANI	GGCC	4 cut(s)	178, 188, 699, 875
BspCNI	CTCAG	1 cut(s)	523
BspEI	TCCGGA	1 cut(s)	628
BspFNI	CGCG	2 cut(s)	49, 51
BspLI	GGNNCC	2 cut(s)	163, 690
BspMAI	CTGCAG	1 cut(s)	873
BspPI	GGATC	6 cut(s)	156, 169, 510, 683, 696, 746
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	3 cut(s)	318, 367, 745
BssECI	CCNNGG	2 cut(s)	165, 189
BssMI	GATC	6 cut(s)	161, 220, 481, 502, 688, 751
BssNI	GRCGYC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	5 cut(s)	27, 205, 391, 470, 838
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	5 cut(s)	416, 559, 613, 711, 873
BstDEI	CTNAG	4 cut(s)	368, 531, 540, 850
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	2 cut(s)	49, 51
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	6 cut(s)	164, 223, 484, 505, 691, 754
BstMAI	GTCTC	2 cut(s)	211, 817
BstMBI	GATC	6 cut(s)	161, 220, 481, 502, 688, 751
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 536, 617
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	869
BstSLI	GKGCMC	1 cut(s)	622
BstUI	CGCG	2 cut(s)	49, 51
BstV1I	GCAGC	4 cut(s)	29, 70, 334, 802
BstX2I	RGATCY	2 cut(s)	161, 688
BstYI	RGATCY	2 cut(s)	161, 688
BstZI	CGGCCG	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	178, 188, 699, 875
BtgI	CCRYGG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	661
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	5 cut(s)	416, 559, 613, 711, 873
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	3 cut(s)	196, 601, 697
CseI	GACGC	1 cut(s)	799
CviAII	CATG	2 cut(s)	190, 655
DdeI	CTNAG	4 cut(s)	368, 531, 540, 850
DpnI	GATC	6 cut(s)	163, 222, 483, 504, 690, 753
DpnII	GATC	6 cut(s)	161, 220, 481, 502, 688, 751
DraI	TTTAAA	1 cut(s)	43
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	176
EagI	CGGCCG	1 cut(s)	176
EciI	GGCGGA	1 cut(s)	239
EclXI	CGGCCG	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	875
Eco32I	GATATC	1 cut(s)	843
Eco47I	GGWCC	2 cut(s)	196, 601
Eco52I	CGGCCG	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	164
EcoRV	GATATC	1 cut(s)	843
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	2 cut(s)	211, 817
FaeI	CATG	2 cut(s)	193, 658
FaqI	GGGAC	2 cut(s)	467, 818
FatI	CATG	2 cut(s)	189, 654
FauI	CCCGC	1 cut(s)	259
FauNDI	CATATG	3 cut(s)	353, 674, 757
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	5 cut(s)	18, 81, 84, 323, 791
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	5 cut(s)	18, 81, 84, 323, 791
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	5 cut(s)	18, 81, 84, 323, 791
HaeIII	GGCC	4 cut(s)	178, 188, 699, 875
HapII	CCGG	2 cut(s)	71, 629
HgaI	GACGC	1 cut(s)	799
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	193, 658
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	2 cut(s)	59, 406
HpaII	CCGG	2 cut(s)	71, 629
HphI	GGTGA	3 cut(s)	22, 118, 850
Hpy166II	GTNNAC	4 cut(s)	173, 261, 329, 620
Hpy188I	TCNGA	1 cut(s)	693
Hpy188III	TCNNGA	6 cut(s)	63, 100, 378, 446, 479, 629
Hpy8I	GTNNAC	4 cut(s)	173, 261, 329, 620
Hpy99I	CGWCG	3 cut(s)	31, 56, 79
HpyAV	CCTTC	5 cut(s)	97, 626, 688, 790, 795
HpyCH4III	ACNGT	5 cut(s)	27, 205, 391, 470, 838
HpyCH4IV	ACGT	4 cut(s)	54, 67, 459, 660
HpyCH4V	TGCA	6 cut(s)	418, 509, 620, 713, 790, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 536, 617
HpyF3I	CTNAG	4 cut(s)	368, 531, 540, 850
HpySE526I	ACGT	4 cut(s)	54, 67, 459, 660
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	193, 658
HspAI	GCGC	1 cut(s)	49
Kpn2I	TCCGGA	1 cut(s)	628
Kzo9I	GATC	6 cut(s)	161, 220, 481, 502, 688, 751
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	4 cut(s)	29, 70, 334, 802
LweI	GCATC	3 cut(s)	544, 570, 598
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	4 cut(s)	54, 67, 459, 660
MalI	GATC	6 cut(s)	163, 222, 483, 504, 690, 753
MboI	GATC	6 cut(s)	161, 220, 481, 502, 688, 751
MboII	GAAGA	1 cut(s)	534
MflI	RGATCY	2 cut(s)	161, 688
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	2 cut(s)	271, 525
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	7 cut(s)	187, 419, 493, 526, 640, 710, 847
MroI	TCCGGA	1 cut(s)	628
MseI	TTAA	5 cut(s)	42, 126, 183, 234, 581
MslI	CAYNNNNRTG	2 cut(s)	297, 659
MspI	CCGG	2 cut(s)	71, 629
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	2 cut(s)	49, 51
MwoI	GCNNNNNNNGC	3 cut(s)	80, 536, 617
NcoI	CCATGG	1 cut(s)	189
NdeI	CATATG	3 cut(s)	353, 674, 757
NdeII	GATC	6 cut(s)	161, 220, 481, 502, 688, 751
NlaIII	CATG	2 cut(s)	193, 658
NlaIV	GGNNCC	2 cut(s)	163, 690
PceI	AGGCCT	1 cut(s)	875
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	809
PkrI	GCNGC	5 cut(s)	19, 82, 85, 324, 792
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	163, 690
PspPI	GGNCC	3 cut(s)	196, 601, 697
PstI	CTGCAG	1 cut(s)	873
PsuI	RGATCY	2 cut(s)	161, 688
PsyI	GACNNNGTC	1 cut(s)	809
RseI	CAYNNNNRTG	2 cut(s)	297, 659
SalI	GTCGAC	1 cut(s)	259
SaqAI	TTAA	5 cut(s)	42, 126, 183, 234, 581
SatI	GCNGC	5 cut(s)	18, 81, 84, 323, 791
Sau3AI	GATC	6 cut(s)	161, 220, 481, 502, 688, 751
Sau96I	GGNCC	3 cut(s)	196, 601, 697
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	3 cut(s)	544, 570, 598
SfcI	CTRYAG	1 cut(s)	869
SinI	GGWCC	2 cut(s)	196, 601
SmiMI	CAYNNNNRTG	2 cut(s)	297, 659
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	2 cut(s)	271, 525
SseBI	AGGCCT	1 cut(s)	875
SsiI	CCGC	6 cut(s)	47, 80, 147, 250, 266, 551
SspMI	CTAG	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	875
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	5 cut(s)	27, 205, 391, 470, 838
TaiI	ACGT	4 cut(s)	57, 70, 462, 663
TaqI	TCGA	2 cut(s)	29, 260
TaqII	GACCGA	1 cut(s)	618
TasI	AATT	2 cut(s)	271, 525
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	5 cut(s)	42, 126, 183, 234, 581
Tru9I	TTAA	5 cut(s)	42, 126, 183, 234, 581
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	4 cut(s)	17, 83, 322, 790
TspDTI	ATGAA	2 cut(s)	17, 643
TspRI	CASTG	1 cut(s)	394
Tth111I	GACNNNGTC	1 cut(s)	809
VneI	GTGCAC	1 cut(s)	618
VpaK11BI	GGWCC	2 cut(s)	196, 601
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	1 cut(s)	576
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.