AT5G01190

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
72292 .. 74769
2478 bp
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UTR
Exon/CDS
Intron
AT5G01190.2

Sequence Viewer

Length: 1677 bp
ATGGTATTTCCAATTCGGATTTTGGTTCTTTTCGCATTGCTCGCCTTCCCGGCATGCGTCCACGGTGCAATCCGCAAGTACACCTTCAACGTGGTAACGAAACAAGTGACGCGGATTTGTTCAACGAAACAGATCGTTACCGTTAACGGTAAATTCCCAGGACCCACAATCTACGCTAATGAAGACGACACAATTCTCGTTAACGTCGTTAACAACGTCAAGTATAACGTCTCTATCCATTGGCATGGGATAAGACAATTAAGAACCGGTTGGGCTGACGGACCGGCCTACATAACTCAATGTCCAATTAAGCCGGGTCACAGCTACGTGTATAATTTCACGGTCACGGGTCAACGTGGTACGCTCTGGTGGCACGCACATGTTCTCTGGCTCCGAGCTACGGTTCATGGTGCCATCGTGATTCTGCCTAAACTGGGTCTACCTTACCCGTTCCCTAAACCACATAGAGAAGAAGTCATCATACTCGGTGAGTGGTGGAAATCAGATACCGAAACGGTAGTAAATGAAGCATTAAAATCCGGTTTAGCACCAAATGTCTCAGATGCTCACGTCATTAACGGTCATCCCGGTTTCGTTCCAAATTGTCCGTCGCAAGGTAATTTTAAATTAGCGGTAGAGAGCGGGAAAACATACATGCTACGACTAATAAACGCAGCATTGAACGAAGAACTCTTCTTCAAGATCGCCGGCCACCGTTTCACCGTTGTGGAAGTCGACGCCGTATATGTCAAACCCTTCAACACCGACACAATCCTAATCGCCCCCGGTCAAACCACCACCGCCTTAGTCTCCGCCGCACGTCCTTCCGGTCAATATCTAATCGCCGCTGCTCCTTTCCAAGACTCCGCCGTCGTCGCCGTCGATAATCGCACCGCCACCGCTACCGTTCATTACTCCGGCACGCTCTCCGCCACACCCACCAAAACCACTTCACCACCGCCTCAAAACGCCACCTCTGTCGCAAATACATTCGTTAATTCCCTCAGAAGTCTCAATTCCAAGACATATCCGGCTAACGTTCCGATCACCGTTGACCACGATCTTCTATTCACCGTTGGATTAGGAATCAACCGATGTCACAGCTGTAAAGCCGGAAACTTCTCACGAGTCGTCGCCGCCATAAACAACATTACATTCAAGATGCCTAAAACGGCTCTGCTTCAAGCGCATTACTTTAACCTAACCGGAATATACACAACCGATTTTCCTGCAAAACCAAGACGGGTTTTCGATTTTACCGGAAAACCGCCTTCCAATTTAGCAACCATGAAGGCTACAAAGCTTTACAAGCTTCCATATAATTCGACGGTGCAAGTTGTTTTGCAAGACACCGGAAATGTAGCGCCGGAGAATCATCCGATTCATCTACATGGATTTAATTTCTTTGTGGTTGGTTTAGGAACTGGAAACTATAATTCCAAGAAAGATTCTAACAAGTTTAATCTTGTTGATCCGGTGGAGAGAAATACCGTCGGTGTACCTTCCGGTGGTTGGGCGGCGATCAGATTCCGAGCAGATAATCCAGGGGTTTGGTTTATGCATTGCCATTTAGAGGTACATACAACATGGGGACTAAAAATGGCTTTCTTGGTGGAGAATGGTAAAGGCCCTAACCAATCAATTCGTCCTCCTCCAAGTGATCTTCCCAAATGTTGA

Protein Analysis

558

Amino Acids

61.3

Weight (kDa)

9.52

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 29 - 130 1e-40 Multicopper oxidase
Cu-oxidase PF00394 144 - 293 4.5e-46 Multicopper oxidase
Cu-oxidase_2 PF07731 395 - 527 2e-42 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 869
AccB1I GGYRCC 1 cut(s) 410
AccBSI CCGCTC 1 cut(s) 642
AccI GTMKAC 2 cut(s) 439, 735
AccII CGCG 1 cut(s) 112
AclI AACGTT 1 cut(s) 1038
AclWI GGATC 1 cut(s) 1466
AcoI YGGCCR 1 cut(s) 709
AcsI RAATTY 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 4 cut(s) 80, 361, 1500, 1578
AfiI CCNNNNNNNGG 6 cut(s) 400, 434, 614, 1508, 1512, 1573
AflIII ACRYGT 2 cut(s) 327, 379
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 7 cut(s) 88, 123, 682, 700, 760, 1159, 1184
AjiI CACGTC 2 cut(s) 571, 821
AjnI CCWGG 2 cut(s) 157, 1543
AleI CACNNNNGTG 1 cut(s) 725
AluBI AGCT 5 cut(s) 324, 398, 1104, 1303, 1312
AluI AGCT 5 cut(s) 324, 398, 1104, 1303, 1312
Alw26I GTCTC 4 cut(s) 235, 562, 814, 1016
AlwI GGATC 1 cut(s) 1466
AoxI GGCC 3 cut(s) 285, 709, 1627
ApeKI GCWGC 2 cut(s) 674, 848
ApoI RAATTY 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
AsiGI ACCGGT 1 cut(s) 266
AspLEI GCGC 2 cut(s) 1189, 1366
AspS9I GGNCC 3 cut(s) 161, 281, 1628
AsuC2I CCSGG 4 cut(s) 50, 315, 588, 786
AsuHPI GGTGA 5 cut(s) 500, 712, 945, 1039, 1063
AvaII GGWCC 2 cut(s) 161, 281
BanI GGYRCC 1 cut(s) 410
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BauI CACGAG 1 cut(s) 1125
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 686, 835
BccI CCATC 1 cut(s) 422
BceAI ACGGC 4 cut(s) 725, 854, 863, 1188
BcgI CGANNNNNNTGC 2 cut(s) 1211, 1245
BciT130I CCWGG 2 cut(s) 159, 1545
BcnI CCSGG 4 cut(s) 50, 315, 588, 786
BcoDI GTCTC 4 cut(s) 235, 562, 814, 1016
BfoI RGCGCY 1 cut(s) 1367
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 6 cut(s) 675, 816, 846, 849, 1137, 1518
BlsI GCNGC 6 cut(s) 676, 817, 847, 850, 1138, 1519
Bme1390I CCNGG 6 cut(s) 50, 159, 315, 588, 786, 1545
Bme18I GGWCC 2 cut(s) 161, 281
BmgBI CACGTC 2 cut(s) 571, 821
BmgT120I GGNCC 3 cut(s) 161, 281, 1628
BmiI GGNNCC 3 cut(s) 163, 392, 412
BmrFI CCNGG 6 cut(s) 50, 159, 315, 588, 786, 1545
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 2 cut(s) 553, 1152
BmuI ACTGGG 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 189
BpuMI CCSGG 4 cut(s) 50, 315, 588, 786
BsaAI YACGTR 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 738
BsaJI CCNNGG 4 cut(s) 61, 157, 784, 1544
BsaWI WCCGGW 8 cut(s) 266, 539, 827, 1205, 1259, 1352, 1474, 1505
Bsc4I CCNNNNNNNGG 6 cut(s) 400, 434, 614, 1508, 1512, 1573
Bse118I RCCGGY 3 cut(s) 266, 283, 707
Bse1I ACTGG 2 cut(s) 438, 1429
Bse3DI GCAATG 2 cut(s) 35, 1561
BseBI CCWGG 2 cut(s) 159, 1545
BseDI CCNNGG 4 cut(s) 61, 157, 784, 1544
BseGI GGATG 2 cut(s) 583, 1375
BseLI CCNNNNNNNGG 6 cut(s) 400, 434, 614, 1508, 1512, 1573
BseMI GCAATG 2 cut(s) 35, 1561
BseMII CTCAG 2 cut(s) 573, 1018
BseNI ACTGG 2 cut(s) 438, 1429
BseRI GAGGAG 1 cut(s) 1641
BseXI GCAGC 2 cut(s) 686, 835
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 3 cut(s) 287, 711, 1629
BshNI GGYRCC 1 cut(s) 410
BshTI ACCGGT 1 cut(s) 266
BslFI GGGAC 1 cut(s) 1605
BslI CCNNNNNNNGG 6 cut(s) 400, 434, 614, 1508, 1512, 1573
BsmAI GTCTC 4 cut(s) 235, 562, 814, 1016
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 1605
BsnI GGCC 3 cut(s) 287, 711, 1629
Bsp143I GATC 7 cut(s) 132, 702, 1044, 1060, 1471, 1521, 1660
BspANI GGCC 3 cut(s) 287, 711, 1629
BspCNI CTCAG 2 cut(s) 572, 1017
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 3 cut(s) 163, 392, 412
BspPI GGATC 1 cut(s) 1466
BspT107I GGYRCC 1 cut(s) 410
BsrBI CCGCTC 1 cut(s) 642
BsrDI GCAATG 2 cut(s) 35, 1561
BsrFI RCCGGY 3 cut(s) 266, 283, 707
BsrI ACTGG 2 cut(s) 438, 1429
BssAI RCCGGY 3 cut(s) 266, 283, 707
BssECI CCNNGG 4 cut(s) 61, 157, 784, 1544
BssMI GATC 7 cut(s) 132, 702, 1044, 1060, 1471, 1521, 1660
BssNI GRCGYC 1 cut(s) 738
BssSI CACGAG 1 cut(s) 1125
Bst2BI CACGAG 1 cut(s) 1125
Bst2UI CCWGG 2 cut(s) 159, 1545
Bst6I CTCTTC 1 cut(s) 698
BstACI GRCGYC 1 cut(s) 738
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 5 cut(s) 42, 55, 375, 709, 923
BstDEI CTNAG 3 cut(s) 559, 805, 1004
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 2 cut(s) 583, 1375
BstFNI CGCG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 1367
BstHHI GCGC 2 cut(s) 1189, 1366
BstKTI GATC 7 cut(s) 135, 705, 1047, 1063, 1474, 1524, 1663
BstMAI GTCTC 4 cut(s) 235, 562, 814, 1016
BstMBI GATC 7 cut(s) 132, 702, 1044, 1060, 1471, 1521, 1660
BstMWI GCNNNNNNNGC 6 cut(s) 41, 50, 370, 875, 1186, 1309
BstNI CCWGG 2 cut(s) 159, 1545
BstNSI RCATGY 3 cut(s) 57, 383, 658
BstSCI CCNGG 6 cut(s) 48, 157, 313, 586, 784, 1543
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 686, 835
BstV2I GAAGAC 1 cut(s) 189
BstXI CCANNNNNNTGG 2 cut(s) 245, 1551
BsuRI GGCC 3 cut(s) 287, 711, 1629
BtgI CCRYGG 1 cut(s) 61
BtrI CACGTC 2 cut(s) 571, 821
BtsCI GGATG 2 cut(s) 583, 1375
Cac8I GCNNGC 5 cut(s) 42, 55, 375, 709, 923
CfoI GCGC 2 cut(s) 1189, 1366
Cfr10I RCCGGY 3 cut(s) 266, 283, 707
Cfr13I GGNCC 3 cut(s) 161, 281, 1628
CpoI CGGWCCG 1 cut(s) 281
CseI GACGC 3 cut(s) 46, 118, 746
Csp6I GTAC 4 cut(s) 79, 360, 1499, 1577
CspAI ACCGGT 1 cut(s) 266
CspI CGGWCCG 1 cut(s) 281
CviAII CATG 8 cut(s) 54, 245, 380, 407, 655, 1288, 1391, 1587
CviQI GTAC 4 cut(s) 79, 360, 1499, 1577
DdeI CTNAG 3 cut(s) 559, 805, 1004
DpnI GATC 7 cut(s) 134, 704, 1046, 1062, 1473, 1523, 1662
DpnII GATC 7 cut(s) 132, 702, 1044, 1060, 1471, 1521, 1660
DraI TTTAAA 1 cut(s) 625
DrdI GACNNNNNNGTC 1 cut(s) 869
DseDI GACNNNNNNGTC 1 cut(s) 869
EaeI YGGCCR 1 cut(s) 709
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
EciI GGCGGA 3 cut(s) 802, 856, 919
Eco47I GGWCC 2 cut(s) 161, 281
EcoO109I RGGNCCY 2 cut(s) 161, 1628
EcoRII CCWGG 2 cut(s) 157, 1543
EcoT22I ATGCAT 1 cut(s) 1563
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 8 cut(s) 57, 248, 383, 410, 658, 1291, 1394, 1590
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 1 cut(s) 1605
FatI CATG 8 cut(s) 53, 244, 379, 406, 654, 1287, 1390, 1586
FauI CCCGC 1 cut(s) 635
FblI GTMKAC 2 cut(s) 439, 735
Fnu4HI GCNGC 6 cut(s) 675, 816, 846, 849, 1137, 1518
FokI GGATG 2 cut(s) 570, 1362
Fsp4HI GCNGC 6 cut(s) 675, 816, 846, 849, 1137, 1518
GlaI GCGC 2 cut(s) 1188, 1365
GluI GCNGC 6 cut(s) 675, 816, 846, 849, 1137, 1518
HaeII RGCGCY 1 cut(s) 1367
HaeIII GGCC 3 cut(s) 287, 711, 1629
HgaI GACGC 3 cut(s) 46, 118, 746
HhaI GCGC 2 cut(s) 1189, 1366
Hin1I GRCGYC 1 cut(s) 738
Hin1II CATG 8 cut(s) 57, 248, 383, 410, 658, 1291, 1394, 1590
Hin6I GCGC 2 cut(s) 1187, 1364
HinP1I GCGC 2 cut(s) 1187, 1364
HincII GTYRAC 6 cut(s) 145, 202, 211, 353, 736, 1054
HindII GTYRAC 6 cut(s) 145, 202, 211, 353, 736, 1054
HindIII AAGCTT 2 cut(s) 1301, 1310
HinfI GANTC 8 cut(s) 421, 863, 1086, 1128, 1372, 1381, 1448, 1527
HpaI GTTAAC 3 cut(s) 145, 202, 211
HphI GGTGA 5 cut(s) 500, 712, 945, 1039, 1063
Hpy188I TCNGA 9 cut(s) 18, 395, 505, 562, 1007, 1044, 1380, 1526, 1532
Hpy188III TCNNGA 4 cut(s) 418, 700, 1125, 1159
Hpy99I CGWCG 9 cut(s) 209, 613, 740, 875, 878, 884, 1136, 1330, 1496
HpyAV CCTTC 7 cut(s) 55, 94, 766, 834, 1281, 1285, 1512
HpyCH4IV ACGT 9 cut(s) 90, 204, 216, 228, 327, 355, 570, 820, 1038
HpyCH4V TGCA 5 cut(s) 68, 1232, 1333, 1345, 1561
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 50, 370, 875, 1186, 1309
HpyF3I CTNAG 3 cut(s) 559, 805, 1004
HpySE526I ACGT 9 cut(s) 90, 204, 216, 228, 327, 355, 570, 820, 1038
Hsp92I GRCGYC 1 cut(s) 738
Hsp92II CATG 8 cut(s) 57, 248, 383, 410, 658, 1291, 1394, 1590
HspAI GCGC 2 cut(s) 1187, 1364
KroI GCCGGC 1 cut(s) 707
KroNI GCCGGC 1 cut(s) 709
KspAI GTTAAC 3 cut(s) 145, 202, 211
Kzo9I GATC 7 cut(s) 132, 702, 1044, 1060, 1471, 1521, 1660
LmnI GCTCC 2 cut(s) 396, 856
Lsp1109I GCAGC 2 cut(s) 686, 835
LweI GCATC 2 cut(s) 553, 1152
MaeII ACGT 9 cut(s) 90, 204, 216, 228, 327, 355, 570, 820, 1038
MaeIII GTNAC 6 cut(s) 94, 106, 136, 317, 343, 1097
MalI GATC 7 cut(s) 134, 704, 1046, 1062, 1473, 1523, 1662
MbiI CCGCTC 1 cut(s) 642
MboI GATC 7 cut(s) 132, 702, 1044, 1060, 1471, 1521, 1660
MboII GAAGA 7 cut(s) 194, 482, 685, 688, 698, 1055, 1655
MlyI GAGTC 2 cut(s) 857, 1137
MmeI TCCRAC 1 cut(s) 1057
MnlI CCTC 6 cut(s) 972, 985, 1013, 1567, 1659, 1662
Mph1103I ATGCAT 1 cut(s) 1563
MroNI GCCGGC 1 cut(s) 707
MslI CAYNNNNRTG 4 cut(s) 243, 378, 725, 1389
MspA1I CMGCKG 2 cut(s) 848, 1104
MspR9I CCNGG 6 cut(s) 50, 159, 315, 588, 786, 1545
MvaI CCWGG 2 cut(s) 159, 1545
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 6 cut(s) 41, 50, 370, 875, 1186, 1309
NaeI GCCGGC 1 cut(s) 709
NciI CCSGG 4 cut(s) 50, 315, 588, 786
NdeII GATC 7 cut(s) 132, 702, 1044, 1060, 1471, 1521, 1660
NgoMIV GCCGGC 1 cut(s) 707
NlaIII CATG 8 cut(s) 57, 248, 383, 410, 658, 1291, 1394, 1590
NlaIV GGNNCC 3 cut(s) 163, 392, 412
NmuCI GTSAC 4 cut(s) 106, 317, 343, 1097
NsiI ATGCAT 1 cut(s) 1563
NspI RCATGY 3 cut(s) 57, 383, 658
OliI CACNNNNGTG 1 cut(s) 725
PaeI GCATGC 1 cut(s) 57
PciI ACATGT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 213, 879
PdiI GCCGGC 1 cut(s) 709
PfeI GAWTC 6 cut(s) 421, 1086, 1372, 1381, 1448, 1527
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 6 cut(s) 676, 817, 847, 850, 1138, 1519
PleI GAGTC 2 cut(s) 857, 1136
PpsI GAGTC 2 cut(s) 857, 1136
Ppu21I YACGTR 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 161
PscI ACATGT 1 cut(s) 379
Psp1406I AACGTT 1 cut(s) 1038
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 2 cut(s) 157, 1543
PspGI CCWGG 2 cut(s) 157, 1543
PspN4I GGNNCC 3 cut(s) 163, 392, 412
PspPI GGNCC 3 cut(s) 161, 281, 1628
PspPPI RGGWCCY 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 1104
RsaI GTAC 4 cut(s) 80, 361, 1500, 1578
RsaNI GTAC 4 cut(s) 79, 360, 1499, 1577
RseI CAYNNNNRTG 4 cut(s) 243, 378, 725, 1389
Rsr2I CGGWCCG 1 cut(s) 281
RsrII CGGWCCG 1 cut(s) 281
SalI GTCGAC 1 cut(s) 734
SatI GCNGC 6 cut(s) 675, 816, 846, 849, 1137, 1518
Sau3AI GATC 7 cut(s) 132, 702, 1044, 1060, 1471, 1521, 1660
Sau96I GGNCC 3 cut(s) 161, 281, 1628
SchI GAGTC 2 cut(s) 857, 1137
ScrFI CCNGG 6 cut(s) 50, 159, 315, 588, 786, 1545
SfaNI GCATC 2 cut(s) 553, 1152
SinI GGWCC 2 cut(s) 161, 281
SmiMI CAYNNNNRTG 4 cut(s) 243, 378, 725, 1389
SphI GCATGC 1 cut(s) 57
StyD4I CCNGG 6 cut(s) 48, 157, 313, 586, 784, 1543
TaiI ACGT 9 cut(s) 93, 207, 219, 231, 330, 358, 573, 823, 1041
TaqI TCGA 4 cut(s) 735, 882, 1251, 1325
TatI WGTACW 1 cut(s) 78
TauI GCSGC 4 cut(s) 818, 848, 1139, 1520
TfiI GAWTC 6 cut(s) 421, 1086, 1372, 1381, 1448, 1527
TseFI GTSAC 4 cut(s) 106, 317, 343, 1097
TseI GCWGC 2 cut(s) 674, 848
Tsp45I GTSAC 4 cut(s) 106, 317, 343, 1097
TspDTI ATGAA 6 cut(s) 195, 395, 540, 899, 1304, 1373
TspGWI ACGGA 2 cut(s) 294, 597
VpaK11BI GGWCC 2 cut(s) 161, 281
XapI RAATTY 1 cut(s) 152
XceI RCATGY 3 cut(s) 57, 383, 658
XmiI GTMKAC 2 cut(s) 439, 735
Zsp2I ATGCAT 1 cut(s) 1563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.