Lignin degradation and detoxification of lignin-derived products
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G38080 AT5G01190 AT5G01190 |
| fragaria_vesca | FvH4_6g11960 FvH4_7g23980 |
| malus_domestica | MD04G1147700.v1.1 MD07G1213300.v1.1 MD12G1161000.v1.1 |
| prunus_persica | Prupe.2G245800_v2.0.a1 Prupe.6G271500_v2.0.a1 |
| pyrus_communis | pycom04g13330 |
| rosa_chinensis | RchiOBHm_Chr1g0369321 RchiOBHm_Chr3g0463771 |
| rosa_laevigata | RLG00000024758 RLG00000027137 |
| rosa_multiflora | Rmu_sc0001482.1_g000010 Rmu_sc0003267.1_g000044 Rmu_sc0004796.1_g000014 |
| rosa_roxburghii | Rroxscaffold_4G00287730 Rroxscaffold_6G00416320 |
| rosa_rugosa | Rorug01G0349600 Rorug03G0067400 |
| rosa_samantha | Rh1BG320800 Rh1CG334800 Rh3AG124600 Rh3BG129200 Rh3DG129900 |
| rosa_wichuraiana | Rw1G031500 Rw3G010530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 576 |
| Acc36I | ACCTGC | 1 cut(s) | 672 |
| AccB1I | GGYRCC | 1 cut(s) | 419 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 608, 1508 |
| AciI | CCGC | 1 cut(s) | 284 |
| AclWI | GGATC | 2 cut(s) | 1430, 1466 |
| AcoI | YGGCCR | 1 cut(s) | 589 |
| AfaI | GTAC | 4 cut(s) | 56, 1034, 1319, 1500 |
| AfeI | AGCGCT | 1 cut(s) | 687 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 443, 608, 1293, 1508 |
| AflII | CTTAAG | 1 cut(s) | 1595 |
| AflIII | ACRYGT | 2 cut(s) | 640, 1109 |
| AgsI | TTSAA | 9 cut(s) | 109, 521, 647, 709, 740, 903, 1184, 1252, 1462 |
| AjnI | CCWGG | 7 cut(s) | 166, 322, 607, 793, 1543, 1569, 1586 |
| AluBI | AGCT | 6 cut(s) | 124, 278, 497, 524, 1129, 1155 |
| AluI | AGCT | 6 cut(s) | 124, 278, 497, 524, 1129, 1155 |
| Alw26I | GTCTC | 2 cut(s) | 571, 1631 |
| AlwI | GGATC | 2 cut(s) | 1430, 1466 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 608 |
| Aor51HI | AGCGCT | 1 cut(s) | 687 |
| AoxI | GGCC | 6 cut(s) | 358, 405, 550, 589, 796, 1627 |
| ApeKI | GCWGC | 3 cut(s) | 683, 854, 1136 |
| AspLEI | GCGC | 3 cut(s) | 577, 688, 877 |
| AspS9I | GGNCC | 6 cut(s) | 170, 290, 405, 599, 1447, 1628 |
| AsuC2I | CCSGG | 1 cut(s) | 59 |
| AsuHPI | GGTGA | 3 cut(s) | 11, 139, 1069 |
| AsuII | TTCGAA | 2 cut(s) | 1012, 1025 |
| AvaII | GGWCC | 4 cut(s) | 170, 290, 599, 1447 |
| BaeGI | GKGCMC | 2 cut(s) | 371, 723 |
| BalI | TGGCCA | 1 cut(s) | 591 |
| BanI | GGYRCC | 1 cut(s) | 419 |
| BbsI | GAAGAC | 1 cut(s) | 97 |
| BbvI | GCAGC | 3 cut(s) | 695, 866, 1123 |
| BccI | CCATC | 5 cut(s) | 152, 281, 1383, 1392, 1506 |
| BceAI | ACGGC | 1 cut(s) | 1287 |
| BciT130I | CCWGG | 7 cut(s) | 168, 324, 609, 795, 1545, 1571, 1588 |
| BcnI | CCSGG | 1 cut(s) | 59 |
| BcoDI | GTCTC | 2 cut(s) | 571, 1631 |
| BfaI | CTAG | 3 cut(s) | 1130, 1610, 1675 |
| BfmI | CTRYAG | 3 cut(s) | 10, 1056, 1170 |
| BfoI | RGCGCY | 1 cut(s) | 689 |
| BfrI | CTTAAG | 1 cut(s) | 1595 |
| BfuAI | ACCTGC | 1 cut(s) | 672 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 366 |
| BisI | GCNGC | 3 cut(s) | 684, 855, 1137 |
| BlsI | GCNGC | 3 cut(s) | 685, 856, 1138 |
| Bme1390I | CCNGG | 8 cut(s) | 59, 168, 324, 609, 795, 1545, 1571, 1588 |
| Bme18I | GGWCC | 4 cut(s) | 170, 290, 599, 1447 |
| BmgT120I | GGNCC | 6 cut(s) | 170, 290, 405, 599, 1447, 1628 |
| BmiI | GGNNCC | 3 cut(s) | 421, 928, 1449 |
| BmrFI | CCNGG | 8 cut(s) | 59, 168, 324, 609, 795, 1545, 1571, 1588 |
| BmsI | GCATC | 6 cut(s) | 562, 681, 736, 862, 1152, 1590 |
| BpiI | GAAGAC | 1 cut(s) | 97 |
| Bpu10I | CCTNAGC | 1 cut(s) | 401 |
| Bpu14I | TTCGAA | 2 cut(s) | 1012, 1025 |
| BpuMI | CCSGG | 1 cut(s) | 59 |
| BsaJI | CCNNGG | 6 cut(s) | 75, 166, 323, 793, 1543, 1587 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 443, 608, 1293, 1508 |
| Bse118I | RCCGGY | 1 cut(s) | 1259 |
| Bse1I | ACTGG | 5 cut(s) | 254, 602, 878, 983, 1510 |
| Bse3DI | GCAATG | 4 cut(s) | 36, 911, 1080, 1561 |
| BseBI | CCWGG | 7 cut(s) | 168, 324, 609, 795, 1545, 1571, 1588 |
| BseDI | CCNNGG | 6 cut(s) | 75, 166, 323, 793, 1543, 1587 |
| BseGI | GGATG | 4 cut(s) | 292, 877, 1375, 1517 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 443, 608, 1293, 1508 |
| BseMI | GCAATG | 4 cut(s) | 36, 911, 1080, 1561 |
| BseMII | CTCAG | 3 cut(s) | 582, 635, 1509 |
| BseNI | ACTGG | 5 cut(s) | 254, 602, 878, 983, 1510 |
| BseRI | GAGGAG | 1 cut(s) | 957 |
| BseSI | GKGCMC | 2 cut(s) | 371, 723 |
| BseXI | GCAGC | 3 cut(s) | 695, 866, 1123 |
| BseYI | CCCAGC | 2 cut(s) | 1228, 1312 |
| BshFI | GGCC | 6 cut(s) | 360, 407, 552, 591, 798, 1629 |
| BshNI | GGYRCC | 1 cut(s) | 419 |
| BsiSI | CCGG | 2 cut(s) | 59, 1260 |
| BslFI | GGGAC | 2 cut(s) | 1031, 1309 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 443, 608, 1293, 1508 |
| BsmAI | GTCTC | 2 cut(s) | 571, 1631 |
| BsmFI | GGGAC | 2 cut(s) | 1031, 1309 |
| BsmI | GAATGC | 2 cut(s) | 62, 960 |
| BsnI | GGCC | 6 cut(s) | 360, 407, 552, 591, 798, 1629 |
| Bsp119I | TTCGAA | 2 cut(s) | 1012, 1025 |
| Bsp1286I | GDGCHC | 2 cut(s) | 371, 723 |
| Bsp143I | GATC | 2 cut(s) | 1435, 1471 |
| BspACI | CCGC | 1 cut(s) | 284 |
| BspANI | GGCC | 6 cut(s) | 360, 407, 552, 591, 798, 1629 |
| BspCNI | CTCAG | 3 cut(s) | 581, 634, 1508 |
| BspLI | GGNNCC | 3 cut(s) | 421, 928, 1449 |
| BspMAI | CTGCAG | 1 cut(s) | 14 |
| BspMI | ACCTGC | 1 cut(s) | 672 |
| BspPI | GGATC | 2 cut(s) | 1430, 1466 |
| BspQI | GCTCTTC | 1 cut(s) | 622 |
| BspT104I | TTCGAA | 2 cut(s) | 1012, 1025 |
| BspT107I | GGYRCC | 1 cut(s) | 419 |
| BspTI | CTTAAG | 1 cut(s) | 1595 |
| BsrDI | GCAATG | 4 cut(s) | 36, 911, 1080, 1561 |
| BsrFI | RCCGGY | 1 cut(s) | 1259 |
| BsrI | ACTGG | 5 cut(s) | 254, 602, 878, 983, 1510 |
| BssAI | RCCGGY | 1 cut(s) | 1259 |
| BssECI | CCNNGG | 6 cut(s) | 75, 166, 323, 793, 1543, 1587 |
| BssMI | GATC | 2 cut(s) | 1435, 1471 |
| BssT1I | CCWWGG | 1 cut(s) | 75 |
| Bst2UI | CCWGG | 7 cut(s) | 168, 324, 609, 795, 1545, 1571, 1588 |
| Bst4CI | ACNGT | 6 cut(s) | 151, 202, 487, 733, 1032, 1330 |
| Bst6I | CTCTTC | 1 cut(s) | 622 |
| BstAFI | CTTAAG | 1 cut(s) | 1595 |
| BstBI | TTCGAA | 2 cut(s) | 1012, 1025 |
| BstC8I | GCNNGC | 4 cut(s) | 14, 384, 554, 1127 |
| BstDEI | CTNAG | 5 cut(s) | 135, 401, 568, 621, 1495 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 441 |
| BstF5I | GGATG | 4 cut(s) | 292, 877, 1375, 1517 |
| BstH2I | RGCGCY | 1 cut(s) | 689 |
| BstHHI | GCGC | 3 cut(s) | 577, 688, 877 |
| BstKTI | GATC | 2 cut(s) | 1438, 1474 |
| BstMAI | GTCTC | 2 cut(s) | 571, 1631 |
| BstMBI | GATC | 2 cut(s) | 1435, 1471 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 366, 1361, 1600 |
| BstNI | CCWGG | 7 cut(s) | 168, 324, 609, 795, 1545, 1571, 1588 |
| BstNSI | RCATGY | 4 cut(s) | 386, 644, 1113, 1282 |
| BstSCI | CCNGG | 8 cut(s) | 57, 166, 322, 607, 793, 1543, 1569, 1586 |
| BstSFI | CTRYAG | 3 cut(s) | 10, 1056, 1170 |
| BstSLI | GKGCMC | 2 cut(s) | 371, 723 |
| BstV1I | GCAGC | 3 cut(s) | 695, 866, 1123 |
| BstV2I | GAAGAC | 1 cut(s) | 97 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1391, 1551 |
| BsuRI | GGCC | 6 cut(s) | 360, 407, 552, 591, 798, 1629 |
| BtsCI | GGATG | 4 cut(s) | 292, 877, 1375, 1517 |
| BtsI | GCAGTG | 1 cut(s) | 1350 |
| BtsIMutI | CAGTG | 2 cut(s) | 247, 1350 |
| BveI | ACCTGC | 1 cut(s) | 672 |
| Cac8I | GCNNGC | 4 cut(s) | 14, 384, 554, 1127 |
| CaiI | CAGNNNCTG | 1 cut(s) | 608 |
| CfoI | GCGC | 3 cut(s) | 577, 688, 877 |
| Cfr10I | RCCGGY | 1 cut(s) | 1259 |
| Cfr13I | GGNCC | 6 cut(s) | 170, 290, 405, 599, 1447, 1628 |
| Csp6I | GTAC | 4 cut(s) | 55, 1033, 1318, 1499 |
| CviQI | GTAC | 4 cut(s) | 55, 1033, 1318, 1499 |
| DdeI | CTNAG | 5 cut(s) | 135, 401, 568, 621, 1495 |
| DpnI | GATC | 2 cut(s) | 1437, 1473 |
| DpnII | GATC | 2 cut(s) | 1435, 1471 |
| EaeI | YGGCCR | 1 cut(s) | 589 |
| Eam1104I | CTCTTC | 1 cut(s) | 622 |
| EarI | CTCTTC | 1 cut(s) | 622 |
| EciI | GGCGGA | 1 cut(s) | 299 |
| Eco130I | CCWWGG | 1 cut(s) | 75 |
| Eco47I | GGWCC | 4 cut(s) | 170, 290, 599, 1447 |
| Eco47III | AGCGCT | 1 cut(s) | 687 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 441 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1447 |
| EcoRII | CCWGG | 7 cut(s) | 166, 322, 607, 793, 1543, 1569, 1586 |
| EcoT14I | CCWWGG | 1 cut(s) | 75 |
| ErhI | CCWWGG | 1 cut(s) | 75 |
| FaqI | GGGAC | 2 cut(s) | 1031, 1309 |
| Fnu4HI | GCNGC | 3 cut(s) | 684, 855, 1137 |
| FokI | GGATG | 4 cut(s) | 299, 884, 1362, 1524 |
| Fsp4HI | GCNGC | 3 cut(s) | 684, 855, 1137 |
| FspAI | RTGCGCAY | 1 cut(s) | 576 |
| FspBI | CTAG | 3 cut(s) | 1130, 1610, 1675 |
| FspI | TGCGCA | 1 cut(s) | 576 |
| GlaI | GCGC | 3 cut(s) | 576, 687, 876 |
| GluI | GCNGC | 3 cut(s) | 684, 855, 1137 |
| GsaI | CCCAGC | 2 cut(s) | 1232, 1316 |
| HaeII | RGCGCY | 1 cut(s) | 689 |
| HaeIII | GGCC | 6 cut(s) | 360, 407, 552, 591, 798, 1629 |
| HapII | CCGG | 2 cut(s) | 59, 1260 |
| HhaI | GCGC | 3 cut(s) | 577, 688, 877 |
| Hin6I | GCGC | 3 cut(s) | 575, 686, 875 |
| HinP1I | GCGC | 3 cut(s) | 575, 686, 875 |
| HindIII | AAGCTT | 1 cut(s) | 122 |
| HinfI | GANTC | 4 cut(s) | 5, 1004, 1527, 1639 |
| HpaII | CCGG | 2 cut(s) | 59, 1260 |
| HphI | GGTGA | 3 cut(s) | 11, 139, 1069 |
| Hpy166II | GTNNAC | 2 cut(s) | 1215, 1579 |
| Hpy188I | TCNGA | 4 cut(s) | 514, 571, 1335, 1526 |
| Hpy188III | TCNNGA | 1 cut(s) | 709 |
| Hpy8I | GTNNAC | 2 cut(s) | 1215, 1579 |
| HpyAV | CCTTC | 7 cut(s) | 32, 874, 958, 1019, 1190, 1438, 1673 |
| HpyCH4III | ACNGT | 6 cut(s) | 151, 202, 487, 733, 1032, 1330 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 366, 1361, 1600 |
| HpyF3I | CTNAG | 5 cut(s) | 135, 401, 568, 621, 1495 |
| HspAI | GCGC | 3 cut(s) | 575, 686, 875 |
| Kzo9I | GATC | 2 cut(s) | 1435, 1471 |
| LguI | GCTCTTC | 1 cut(s) | 622 |
| LmnI | GCTCC | 1 cut(s) | 1122 |
| Lsp1109I | GCAGC | 3 cut(s) | 695, 866, 1123 |
| LweI | GCATC | 6 cut(s) | 562, 681, 736, 862, 1152, 1590 |
| MaeI | CTAG | 3 cut(s) | 1130, 1610, 1675 |
| MaeIII | GTNAC | 3 cut(s) | 629, 985, 1427 |
| MalI | GATC | 2 cut(s) | 1437, 1473 |
| MboI | GATC | 2 cut(s) | 1435, 1471 |
| MboII | GAAGA | 4 cut(s) | 97, 203, 609, 697 |
| MfeI | CAATTG | 1 cut(s) | 903 |
| MhlI | GDGCHC | 2 cut(s) | 371, 723 |
| MlsI | TGGCCA | 1 cut(s) | 591 |
| MluNI | TGGCCA | 1 cut(s) | 591 |
| MlyI | GAGTC | 3 cut(s) | 14, 998, 1633 |
| MmeI | TCCRAC | 1 cut(s) | 1403 |
| Mox20I | TGGCCA | 1 cut(s) | 591 |
| MscI | TGGCCA | 1 cut(s) | 591 |
| MseI | TTAA | 8 cut(s) | 818, 848, 953, 1020, 1052, 1143, 1398, 1596 |
| MslI | CAYNNNNRTG | 3 cut(s) | 252, 998, 1389 |
| Msp20I | TGGCCA | 1 cut(s) | 591 |
| MspCI | CTTAAG | 1 cut(s) | 1595 |
| MspI | CCGG | 2 cut(s) | 59, 1260 |
| MspR9I | CCNGG | 8 cut(s) | 59, 168, 324, 609, 795, 1545, 1571, 1588 |
| MunI | CAATTG | 1 cut(s) | 903 |
| Mva1269I | GAATGC | 2 cut(s) | 62, 960 |
| MvaI | CCWGG | 7 cut(s) | 168, 324, 609, 795, 1545, 1571, 1588 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 366, 1361, 1600 |
| NciI | CCSGG | 1 cut(s) | 59 |
| NdeII | GATC | 2 cut(s) | 1435, 1471 |
| NlaIV | GGNNCC | 3 cut(s) | 421, 928, 1449 |
| NsbI | TGCGCA | 1 cut(s) | 576 |
| NspI | RCATGY | 4 cut(s) | 386, 644, 1113, 1282 |
| NspV | TTCGAA | 2 cut(s) | 1012, 1025 |
| PaeI | GCATGC | 1 cut(s) | 386 |
| PciI | ACATGT | 2 cut(s) | 640, 1109 |
| PciSI | GCTCTTC | 1 cut(s) | 622 |
| PctI | GAATGC | 2 cut(s) | 62, 960 |
| PfeI | GAWTC | 1 cut(s) | 1527 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 608, 1508 |
| PkrI | GCNGC | 3 cut(s) | 685, 856, 1138 |
| PleI | GAGTC | 3 cut(s) | 13, 998, 1633 |
| PpsI | GAGTC | 3 cut(s) | 13, 998, 1633 |
| PpuMI | RGGWCCY | 1 cut(s) | 1447 |
| PscI | ACATGT | 2 cut(s) | 640, 1109 |
| Psp5II | RGGWCCY | 1 cut(s) | 1447 |
| Psp6I | CCWGG | 7 cut(s) | 166, 322, 607, 793, 1543, 1569, 1586 |
| PspFI | CCCAGC | 2 cut(s) | 1228, 1312 |
| PspGI | CCWGG | 7 cut(s) | 166, 322, 607, 793, 1543, 1569, 1586 |
| PspN4I | GGNNCC | 3 cut(s) | 421, 928, 1449 |
| PspPI | GGNCC | 6 cut(s) | 170, 290, 405, 599, 1447, 1628 |
| PspPPI | RGGWCCY | 1 cut(s) | 1447 |
| PstI | CTGCAG | 1 cut(s) | 14 |
| PstNI | CAGNNNCTG | 1 cut(s) | 608 |
| RsaI | GTAC | 4 cut(s) | 56, 1034, 1319, 1500 |
| RsaNI | GTAC | 4 cut(s) | 55, 1033, 1318, 1499 |
| RseI | CAYNNNNRTG | 3 cut(s) | 252, 998, 1389 |
| SapI | GCTCTTC | 1 cut(s) | 622 |
| SaqAI | TTAA | 8 cut(s) | 818, 848, 953, 1020, 1052, 1143, 1398, 1596 |
| SatI | GCNGC | 3 cut(s) | 684, 855, 1137 |
| Sau3AI | GATC | 2 cut(s) | 1435, 1471 |
| Sau96I | GGNCC | 6 cut(s) | 170, 290, 405, 599, 1447, 1628 |
| SbfI | CCTGCAGG | 1 cut(s) | 14 |
| SchI | GAGTC | 3 cut(s) | 14, 998, 1633 |
| ScrFI | CCNGG | 8 cut(s) | 59, 168, 324, 609, 795, 1545, 1571, 1588 |
| SdaI | CCTGCAGG | 1 cut(s) | 14 |
| SduI | GDGCHC | 2 cut(s) | 371, 723 |
| SfaNI | GCATC | 6 cut(s) | 562, 681, 736, 862, 1152, 1590 |
| SfcI | CTRYAG | 3 cut(s) | 10, 1056, 1170 |
| SfuI | TTCGAA | 2 cut(s) | 1012, 1025 |
| SinI | GGWCC | 4 cut(s) | 170, 290, 599, 1447 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 252, 998, 1389 |
| SmlI | CTYRAG | 1 cut(s) | 1595 |
| SmoI | CTYRAG | 1 cut(s) | 1595 |
| SphI | GCATGC | 1 cut(s) | 386 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 14 |
| SsiI | CCGC | 1 cut(s) | 284 |
| SspMI | CTAG | 3 cut(s) | 1130, 1610, 1675 |
| StyD4I | CCNGG | 8 cut(s) | 57, 166, 322, 607, 793, 1543, 1569, 1586 |
| StyI | CCWWGG | 1 cut(s) | 75 |
| TaaI | ACNGT | 6 cut(s) | 151, 202, 487, 733, 1032, 1330 |
| TaqI | TCGA | 5 cut(s) | 25, 82, 1012, 1025, 1434 |
| TfiI | GAWTC | 1 cut(s) | 1527 |
| Tru1I | TTAA | 8 cut(s) | 818, 848, 953, 1020, 1052, 1143, 1398, 1596 |
| Tru9I | TTAA | 8 cut(s) | 818, 848, 953, 1020, 1052, 1143, 1398, 1596 |
| TscAI | CASTG | 2 cut(s) | 254, 1357 |
| TseI | GCWGC | 3 cut(s) | 683, 854, 1136 |
| TspDTI | ATGAA | 5 cut(s) | 120, 775, 856, 900, 988 |
| TspRI | CASTG | 2 cut(s) | 254, 1357 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 608, 1508 |
| Vha464I | CTTAAG | 1 cut(s) | 1595 |
| VpaK11BI | GGWCC | 4 cut(s) | 170, 290, 599, 1447 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 441 |
| XceI | RCATGY | 4 cut(s) | 386, 644, 1113, 1282 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1509 |
| XspI | CTAG | 3 cut(s) | 1130, 1610, 1675 |