Prupe.2G245800_v2.0.a1

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
26282476 .. 26285556
3081 bp
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UTR
Exon/CDS
Intron
Prupe.2G245800.1

Sequence Viewer

Length: 1677 bp
ATGGAGTCCTGCAGGCTTCACCTTCGAGCAATGTTGTTGTTGGTTGCTTTCTTGTACCCGGCATTCGTTCAGTCCTTGGTTCGACACTATAAGTTTAGTGTGGTCTTCAAAAATACAACAAAGCTTTGTTCATCTAAGCCCACCATCACCGTAAATGGAAAGTTCCCTGGACCAACCTTGTATGCAAGGGAAGATGATACTGTAATTGTAAGGGTCATCAACCATGTAAATCACAATCTCACAATTCACTGGCATGGGGTCAGGCAACTTGGAACAGCTTGGGCGGATGGACCAGCATACATCACACAATGCCCCATACAGCCTGGGCAAAACTTTATCTACAATTTCACACTCACAGGCCAAAGGGGCACACTTCTCTGGCATGCACATACCTCTTGGCTAAGGGCCACTCTACATGGTGCCATTGTTATCTTACCTAAAAGAGGCACTCCTTACCCTTTTCCTACACCTGATGAGGAAAAAACTGTCATATTAGCTGAATGGTGGAAATCAGATGTTGAAGCTGTCGTCAATCAGTCTATAAAGTCTGGCCTGCCACCAAATGTCTCAGATGCGCACACTATCAATGGCCATGCAGGACCAGTTCCTGGTTGCTCTTCTCAGGGGGGTTACACTTTACATGTTGAAAGTGGCAAGACCTACCTGCTACGCATCATAAACGCAGCGCTGAACGATGACTTGTTCTTCAAGATTGCAGGGCACAATCTAACCGTTGTTGAAGTTGATGCCTCCTACACCAAGCCATTCCAAACTGACACCATATTCATCAGCCCAGGCCAAACTACAAATGCAATTTTAACTGCAAATCGGGGAATTGGCAAATACTTAATAGCAGCCTCTCCCTTCATGGATGCGCCAGTTGGCTTTGACAACTTGACTTCAATTGCTTCATTGCTCTACAAGGGAACCCCTGCAAATCCCAAAGCCTTCTTAACCAGCATTCCTCCTCAAAATGCAACACCAGTAACAAACACTTTCATGGACTCCCTTCGAAGCCTTAATTCGAAACAGTACCCTGCTAATGTCCCATTAACTATAGACCATTCACTCTTTTTCACCATTGCAGTTGGTGTAAATCCATGTGCTACATGTGTCAATGGGAGCAAGCTAGTGGCTGCTTTTAACAATGTTAGCTTTGTGATGCCAACTATAGCCCTCCTTCAAGCATATTACTACAACACAAAGGGAGTGTTCACACTTGATTTCCCAGCAAACCCACCAATTCCTTTCAACTATACCGGCAACTCTACGGCTAACATGCAGACCACAAATGGGACAAGACTATATAGGCTGGGGTACAACTCAACGGTTCAGATTGTGCTACAAGGCACTGCTGTCATAGCACCAGAGAGCCATCCAACCCATCTGCATGGCTTTAATTTCTTTGTGGTTGGGAAAGGAATTGGTAACTTCGATCCAAAGAAGGACCCAAAAACATTCAATCTTGTTGATCCTGTTGAGAGGAACACAATCTCAGTACCAACTGGTGGATGGACTGCAATCAGATTCAGGGCAGATAACCCAGGCATTTGGTTTTTGCATTGCCACCTGGAAGTTCACACAACCTGGGGGCTTAAGATGCCATTTCTAGTGGAAAATGGGAAAGGCCCAAATGAGACTCTGCGACCACCTCCTGCTGACCTTCCAACCTGCTAG

Protein Analysis

559

Amino Acids

61.24

Weight (kDa)

9.02

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 672
AccB1I GGYRCC 1 cut(s) 419
AccB7I CCANNNNNTGG 2 cut(s) 608, 1508
AciI CCGC 1 cut(s) 284
AclWI GGATC 2 cut(s) 1430, 1466
AcoI YGGCCR 1 cut(s) 589
AfaI GTAC 4 cut(s) 56, 1034, 1319, 1500
AfeI AGCGCT 1 cut(s) 687
AfiI CCNNNNNNNGG 4 cut(s) 443, 608, 1293, 1508
AflII CTTAAG 1 cut(s) 1595
AflIII ACRYGT 2 cut(s) 640, 1109
AgsI TTSAA 9 cut(s) 109, 521, 647, 709, 740, 903, 1184, 1252, 1462
AjnI CCWGG 7 cut(s) 166, 322, 607, 793, 1543, 1569, 1586
AluBI AGCT 6 cut(s) 124, 278, 497, 524, 1129, 1155
AluI AGCT 6 cut(s) 124, 278, 497, 524, 1129, 1155
Alw26I GTCTC 2 cut(s) 571, 1631
AlwI GGATC 2 cut(s) 1430, 1466
AlwNI CAGNNNCTG 1 cut(s) 608
Aor51HI AGCGCT 1 cut(s) 687
AoxI GGCC 6 cut(s) 358, 405, 550, 589, 796, 1627
ApeKI GCWGC 3 cut(s) 683, 854, 1136
AspLEI GCGC 3 cut(s) 577, 688, 877
AspS9I GGNCC 6 cut(s) 170, 290, 405, 599, 1447, 1628
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 3 cut(s) 11, 139, 1069
AsuII TTCGAA 2 cut(s) 1012, 1025
AvaII GGWCC 4 cut(s) 170, 290, 599, 1447
BaeGI GKGCMC 2 cut(s) 371, 723
BalI TGGCCA 1 cut(s) 591
BanI GGYRCC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 695, 866, 1123
BccI CCATC 5 cut(s) 152, 281, 1383, 1392, 1506
BceAI ACGGC 1 cut(s) 1287
BciT130I CCWGG 7 cut(s) 168, 324, 609, 795, 1545, 1571, 1588
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 571, 1631
BfaI CTAG 3 cut(s) 1130, 1610, 1675
BfmI CTRYAG 3 cut(s) 10, 1056, 1170
BfoI RGCGCY 1 cut(s) 689
BfrI CTTAAG 1 cut(s) 1595
BfuAI ACCTGC 1 cut(s) 672
BglI GCCNNNNNGGC 1 cut(s) 366
BisI GCNGC 3 cut(s) 684, 855, 1137
BlsI GCNGC 3 cut(s) 685, 856, 1138
Bme1390I CCNGG 8 cut(s) 59, 168, 324, 609, 795, 1545, 1571, 1588
Bme18I GGWCC 4 cut(s) 170, 290, 599, 1447
BmgT120I GGNCC 6 cut(s) 170, 290, 405, 599, 1447, 1628
BmiI GGNNCC 3 cut(s) 421, 928, 1449
BmrFI CCNGG 8 cut(s) 59, 168, 324, 609, 795, 1545, 1571, 1588
BmsI GCATC 6 cut(s) 562, 681, 736, 862, 1152, 1590
BpiI GAAGAC 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 401
Bpu14I TTCGAA 2 cut(s) 1012, 1025
BpuMI CCSGG 1 cut(s) 59
BsaJI CCNNGG 6 cut(s) 75, 166, 323, 793, 1543, 1587
Bsc4I CCNNNNNNNGG 4 cut(s) 443, 608, 1293, 1508
Bse118I RCCGGY 1 cut(s) 1259
Bse1I ACTGG 5 cut(s) 254, 602, 878, 983, 1510
Bse3DI GCAATG 4 cut(s) 36, 911, 1080, 1561
BseBI CCWGG 7 cut(s) 168, 324, 609, 795, 1545, 1571, 1588
BseDI CCNNGG 6 cut(s) 75, 166, 323, 793, 1543, 1587
BseGI GGATG 4 cut(s) 292, 877, 1375, 1517
BseLI CCNNNNNNNGG 4 cut(s) 443, 608, 1293, 1508
BseMI GCAATG 4 cut(s) 36, 911, 1080, 1561
BseMII CTCAG 3 cut(s) 582, 635, 1509
BseNI ACTGG 5 cut(s) 254, 602, 878, 983, 1510
BseRI GAGGAG 1 cut(s) 957
BseSI GKGCMC 2 cut(s) 371, 723
BseXI GCAGC 3 cut(s) 695, 866, 1123
BseYI CCCAGC 2 cut(s) 1228, 1312
BshFI GGCC 6 cut(s) 360, 407, 552, 591, 798, 1629
BshNI GGYRCC 1 cut(s) 419
BsiSI CCGG 2 cut(s) 59, 1260
BslFI GGGAC 2 cut(s) 1031, 1309
BslI CCNNNNNNNGG 4 cut(s) 443, 608, 1293, 1508
BsmAI GTCTC 2 cut(s) 571, 1631
BsmFI GGGAC 2 cut(s) 1031, 1309
BsmI GAATGC 2 cut(s) 62, 960
BsnI GGCC 6 cut(s) 360, 407, 552, 591, 798, 1629
Bsp119I TTCGAA 2 cut(s) 1012, 1025
Bsp1286I GDGCHC 2 cut(s) 371, 723
Bsp143I GATC 2 cut(s) 1435, 1471
BspACI CCGC 1 cut(s) 284
BspANI GGCC 6 cut(s) 360, 407, 552, 591, 798, 1629
BspCNI CTCAG 3 cut(s) 581, 634, 1508
BspLI GGNNCC 3 cut(s) 421, 928, 1449
BspMAI CTGCAG 1 cut(s) 14
BspMI ACCTGC 1 cut(s) 672
BspPI GGATC 2 cut(s) 1430, 1466
BspQI GCTCTTC 1 cut(s) 622
BspT104I TTCGAA 2 cut(s) 1012, 1025
BspT107I GGYRCC 1 cut(s) 419
BspTI CTTAAG 1 cut(s) 1595
BsrDI GCAATG 4 cut(s) 36, 911, 1080, 1561
BsrFI RCCGGY 1 cut(s) 1259
BsrI ACTGG 5 cut(s) 254, 602, 878, 983, 1510
BssAI RCCGGY 1 cut(s) 1259
BssECI CCNNGG 6 cut(s) 75, 166, 323, 793, 1543, 1587
BssMI GATC 2 cut(s) 1435, 1471
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 7 cut(s) 168, 324, 609, 795, 1545, 1571, 1588
Bst4CI ACNGT 6 cut(s) 151, 202, 487, 733, 1032, 1330
Bst6I CTCTTC 1 cut(s) 622
BstAFI CTTAAG 1 cut(s) 1595
BstBI TTCGAA 2 cut(s) 1012, 1025
BstC8I GCNNGC 4 cut(s) 14, 384, 554, 1127
BstDEI CTNAG 5 cut(s) 135, 401, 568, 621, 1495
BstENI CCTNNNNNAGG 1 cut(s) 441
BstF5I GGATG 4 cut(s) 292, 877, 1375, 1517
BstH2I RGCGCY 1 cut(s) 689
BstHHI GCGC 3 cut(s) 577, 688, 877
BstKTI GATC 2 cut(s) 1438, 1474
BstMAI GTCTC 2 cut(s) 571, 1631
BstMBI GATC 2 cut(s) 1435, 1471
BstMWI GCNNNNNNNGC 3 cut(s) 366, 1361, 1600
BstNI CCWGG 7 cut(s) 168, 324, 609, 795, 1545, 1571, 1588
BstNSI RCATGY 4 cut(s) 386, 644, 1113, 1282
BstSCI CCNGG 8 cut(s) 57, 166, 322, 607, 793, 1543, 1569, 1586
BstSFI CTRYAG 3 cut(s) 10, 1056, 1170
BstSLI GKGCMC 2 cut(s) 371, 723
BstV1I GCAGC 3 cut(s) 695, 866, 1123
BstV2I GAAGAC 1 cut(s) 97
BstXI CCANNNNNNTGG 2 cut(s) 1391, 1551
BsuRI GGCC 6 cut(s) 360, 407, 552, 591, 798, 1629
BtsCI GGATG 4 cut(s) 292, 877, 1375, 1517
BtsI GCAGTG 1 cut(s) 1350
BtsIMutI CAGTG 2 cut(s) 247, 1350
BveI ACCTGC 1 cut(s) 672
Cac8I GCNNGC 4 cut(s) 14, 384, 554, 1127
CaiI CAGNNNCTG 1 cut(s) 608
CfoI GCGC 3 cut(s) 577, 688, 877
Cfr10I RCCGGY 1 cut(s) 1259
Cfr13I GGNCC 6 cut(s) 170, 290, 405, 599, 1447, 1628
Csp6I GTAC 4 cut(s) 55, 1033, 1318, 1499
CviQI GTAC 4 cut(s) 55, 1033, 1318, 1499
DdeI CTNAG 5 cut(s) 135, 401, 568, 621, 1495
DpnI GATC 2 cut(s) 1437, 1473
DpnII GATC 2 cut(s) 1435, 1471
EaeI YGGCCR 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 622
EciI GGCGGA 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 4 cut(s) 170, 290, 599, 1447
Eco47III AGCGCT 1 cut(s) 687
EcoNI CCTNNNNNAGG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 1447
EcoRII CCWGG 7 cut(s) 166, 322, 607, 793, 1543, 1569, 1586
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaqI GGGAC 2 cut(s) 1031, 1309
Fnu4HI GCNGC 3 cut(s) 684, 855, 1137
FokI GGATG 4 cut(s) 299, 884, 1362, 1524
Fsp4HI GCNGC 3 cut(s) 684, 855, 1137
FspAI RTGCGCAY 1 cut(s) 576
FspBI CTAG 3 cut(s) 1130, 1610, 1675
FspI TGCGCA 1 cut(s) 576
GlaI GCGC 3 cut(s) 576, 687, 876
GluI GCNGC 3 cut(s) 684, 855, 1137
GsaI CCCAGC 2 cut(s) 1232, 1316
HaeII RGCGCY 1 cut(s) 689
HaeIII GGCC 6 cut(s) 360, 407, 552, 591, 798, 1629
HapII CCGG 2 cut(s) 59, 1260
HhaI GCGC 3 cut(s) 577, 688, 877
Hin6I GCGC 3 cut(s) 575, 686, 875
HinP1I GCGC 3 cut(s) 575, 686, 875
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 4 cut(s) 5, 1004, 1527, 1639
HpaII CCGG 2 cut(s) 59, 1260
HphI GGTGA 3 cut(s) 11, 139, 1069
Hpy166II GTNNAC 2 cut(s) 1215, 1579
Hpy188I TCNGA 4 cut(s) 514, 571, 1335, 1526
Hpy188III TCNNGA 1 cut(s) 709
Hpy8I GTNNAC 2 cut(s) 1215, 1579
HpyAV CCTTC 7 cut(s) 32, 874, 958, 1019, 1190, 1438, 1673
HpyCH4III ACNGT 6 cut(s) 151, 202, 487, 733, 1032, 1330
HpyF10VI GCNNNNNNNGC 3 cut(s) 366, 1361, 1600
HpyF3I CTNAG 5 cut(s) 135, 401, 568, 621, 1495
HspAI GCGC 3 cut(s) 575, 686, 875
Kzo9I GATC 2 cut(s) 1435, 1471
LguI GCTCTTC 1 cut(s) 622
LmnI GCTCC 1 cut(s) 1122
Lsp1109I GCAGC 3 cut(s) 695, 866, 1123
LweI GCATC 6 cut(s) 562, 681, 736, 862, 1152, 1590
MaeI CTAG 3 cut(s) 1130, 1610, 1675
MaeIII GTNAC 3 cut(s) 629, 985, 1427
MalI GATC 2 cut(s) 1437, 1473
MboI GATC 2 cut(s) 1435, 1471
MboII GAAGA 4 cut(s) 97, 203, 609, 697
MfeI CAATTG 1 cut(s) 903
MhlI GDGCHC 2 cut(s) 371, 723
MlsI TGGCCA 1 cut(s) 591
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 3 cut(s) 14, 998, 1633
MmeI TCCRAC 1 cut(s) 1403
Mox20I TGGCCA 1 cut(s) 591
MscI TGGCCA 1 cut(s) 591
MseI TTAA 8 cut(s) 818, 848, 953, 1020, 1052, 1143, 1398, 1596
MslI CAYNNNNRTG 3 cut(s) 252, 998, 1389
Msp20I TGGCCA 1 cut(s) 591
MspCI CTTAAG 1 cut(s) 1595
MspI CCGG 2 cut(s) 59, 1260
MspR9I CCNGG 8 cut(s) 59, 168, 324, 609, 795, 1545, 1571, 1588
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 2 cut(s) 62, 960
MvaI CCWGG 7 cut(s) 168, 324, 609, 795, 1545, 1571, 1588
MwoI GCNNNNNNNGC 3 cut(s) 366, 1361, 1600
NciI CCSGG 1 cut(s) 59
NdeII GATC 2 cut(s) 1435, 1471
NlaIV GGNNCC 3 cut(s) 421, 928, 1449
NsbI TGCGCA 1 cut(s) 576
NspI RCATGY 4 cut(s) 386, 644, 1113, 1282
NspV TTCGAA 2 cut(s) 1012, 1025
PaeI GCATGC 1 cut(s) 386
PciI ACATGT 2 cut(s) 640, 1109
PciSI GCTCTTC 1 cut(s) 622
PctI GAATGC 2 cut(s) 62, 960
PfeI GAWTC 1 cut(s) 1527
PflMI CCANNNNNTGG 2 cut(s) 608, 1508
PkrI GCNGC 3 cut(s) 685, 856, 1138
PleI GAGTC 3 cut(s) 13, 998, 1633
PpsI GAGTC 3 cut(s) 13, 998, 1633
PpuMI RGGWCCY 1 cut(s) 1447
PscI ACATGT 2 cut(s) 640, 1109
Psp5II RGGWCCY 1 cut(s) 1447
Psp6I CCWGG 7 cut(s) 166, 322, 607, 793, 1543, 1569, 1586
PspFI CCCAGC 2 cut(s) 1228, 1312
PspGI CCWGG 7 cut(s) 166, 322, 607, 793, 1543, 1569, 1586
PspN4I GGNNCC 3 cut(s) 421, 928, 1449
PspPI GGNCC 6 cut(s) 170, 290, 405, 599, 1447, 1628
PspPPI RGGWCCY 1 cut(s) 1447
PstI CTGCAG 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 608
RsaI GTAC 4 cut(s) 56, 1034, 1319, 1500
RsaNI GTAC 4 cut(s) 55, 1033, 1318, 1499
RseI CAYNNNNRTG 3 cut(s) 252, 998, 1389
SapI GCTCTTC 1 cut(s) 622
SaqAI TTAA 8 cut(s) 818, 848, 953, 1020, 1052, 1143, 1398, 1596
SatI GCNGC 3 cut(s) 684, 855, 1137
Sau3AI GATC 2 cut(s) 1435, 1471
Sau96I GGNCC 6 cut(s) 170, 290, 405, 599, 1447, 1628
SbfI CCTGCAGG 1 cut(s) 14
SchI GAGTC 3 cut(s) 14, 998, 1633
ScrFI CCNGG 8 cut(s) 59, 168, 324, 609, 795, 1545, 1571, 1588
SdaI CCTGCAGG 1 cut(s) 14
SduI GDGCHC 2 cut(s) 371, 723
SfaNI GCATC 6 cut(s) 562, 681, 736, 862, 1152, 1590
SfcI CTRYAG 3 cut(s) 10, 1056, 1170
SfuI TTCGAA 2 cut(s) 1012, 1025
SinI GGWCC 4 cut(s) 170, 290, 599, 1447
SmiMI CAYNNNNRTG 3 cut(s) 252, 998, 1389
SmlI CTYRAG 1 cut(s) 1595
SmoI CTYRAG 1 cut(s) 1595
SphI GCATGC 1 cut(s) 386
Sse8387I CCTGCAGG 1 cut(s) 14
SsiI CCGC 1 cut(s) 284
SspMI CTAG 3 cut(s) 1130, 1610, 1675
StyD4I CCNGG 8 cut(s) 57, 166, 322, 607, 793, 1543, 1569, 1586
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 6 cut(s) 151, 202, 487, 733, 1032, 1330
TaqI TCGA 5 cut(s) 25, 82, 1012, 1025, 1434
TfiI GAWTC 1 cut(s) 1527
Tru1I TTAA 8 cut(s) 818, 848, 953, 1020, 1052, 1143, 1398, 1596
Tru9I TTAA 8 cut(s) 818, 848, 953, 1020, 1052, 1143, 1398, 1596
TscAI CASTG 2 cut(s) 254, 1357
TseI GCWGC 3 cut(s) 683, 854, 1136
TspDTI ATGAA 5 cut(s) 120, 775, 856, 900, 988
TspRI CASTG 2 cut(s) 254, 1357
Van91I CCANNNNNTGG 2 cut(s) 608, 1508
Vha464I CTTAAG 1 cut(s) 1595
VpaK11BI GGWCC 4 cut(s) 170, 290, 599, 1447
XagI CCTNNNNNAGG 1 cut(s) 441
XceI RCATGY 4 cut(s) 386, 644, 1113, 1282
XcmI CCANNNNNNNNNTGG 1 cut(s) 1509
XspI CTAG 3 cut(s) 1130, 1610, 1675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.