RLG00000024758

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
38801664 .. 38805389
3726 bp
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UTR
Exon/CDS
Intron
RLM00000024758

Sequence Viewer

Length: 1563 bp
ATGGCATCGTGGATTCGAGTGCTTCTACTTCTCTTGGCTTGCCTTCTTCCAGCTTTGGTTGAGAGCAGGGTTCGACACTACAAGTTTAATGTGGTGCTGAAAAACACTACCAGACTATGCTCCACCAAGCCAATTGTAACCATCAACGGTCGTTTCCCAGGGCCAACTCTCTATGCCAGGGAAGACGACACTGTTCTTGTCAAAGTCACCAACCATGTCAAGTACAATGTTTCCATTCACTGGCATGGTATCCGGCAACTCCGGACCGGTTGGGCAGATGGACCAGCATACATCACACAATGCCCTATTCCTCAAGGCCAAAGCTATGTATACAACTTCACCATCACAGGCCAAAGAGGCACACTTCTTTGGCATGCGCATATTAACTGGCTAAGGGCCACAGTCCATGGTGCTTTTGTCATTTTGCCCAAGCGTGGTGTGCCGTATCCTTTCCCGACACCCTACAAGGAAGTTCCTGTTGTATTAGGTGAATGGTGGAAGTCAGATACTGAAGCAGTGATTAATGAAGCTCTCACAGGCGGTGTGGCACCTAACGTGTCAGATGCTCACACTATTAACGGTCATCCAGGCTTTGTCGCTCCAAATTGTACCACACAGGGCGGCTTCAAGTTGTCTGTGGAAAGTGGCAAGACCTACTTGCTCCGCATCATCAATGCTGCGCTCAATGAAGAGCTCTTCTTCAAAATTGCCGGACACAATTTGACAGTAGTGGAAGTCGATGCCACCTATGTAAAACCCTTCAAAATTGACACCATAGTGATTGCCCCTGGACAAACCACCAATGCCCTCATCACCGCAAACCAAAACTCTGGCAAGTACTTGGTTGCCGCCTCCCCATTCTTGGACACTCCTGCTGTTGCCGTAGACAACCTGACTGCCACGGCCACTCTGCACTACTCAGGCACACTTTCTAACTCGCCCACAACTCTCACTATCCCACCTCCTCGAAACGCTACCCAAGTCGCCAACAGTTTTATCAACTCTCTCAGAAGCCTTAATACAAAGACCTTTCCTGCAAAAGTCCCCTTAAAAATTGACCACAGCCTTTACTTCACAGTTGGGCTAGGGGTTAACCCATGTCCTAGTTGCAAAGCCGGTAATGGAAGCCGTGTGGTGGCCAGTGTTAACAACGTCACATTTGTTATGCCAACCACAGCTCTGCTTCAAGCACATTTTTTCAACGCTAGTGGGGTTTTCACCTCTGATTTTCCTGCTAACCCACCAAATGCTTTCAATTTTTCTGGAGGTCTGCCAGCAAATTCAAGTTTGGCGACTACAAATGGGACAAAGGTTTATAGGTTGGCTTATAACTCGACTGTTCAACTTGTTATGCAAGACACTGGGATTATAGCCCCTGAGAACCACCCAGTACATTTGCATGGCTTCAATTTCTTTGTGGTTGGCAAGGGACTTGGTAATTACAACCCCAAGACAGATCCTAAGAACTTTAATCTTGTTGATCCTGTTGAAAGGAACACAATTGGTGTTCCATCTGGTGGTTGGGTAGCCATCCGATTTCTCGCAGATAATCCAGGTAATTAA

Protein Analysis

521

Amino Acids

56.38

Weight (kDa)

9.4

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 34 - 144 6.5e-41 Multicopper oxidase
Cu-oxidase PF00394 157 - 308 5e-47 Multicopper oxidase
Cu-oxidase_2 PF07731 410 - 519 1.7e-28 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1329
Acc16I TGCGCA 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 547
AccB7I CCANNNNNTGG 2 cut(s) 240, 1517
AccI GTMKAC 2 cut(s) 330, 885
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 5 cut(s) 540, 621, 664, 816, 849
AclWI GGATC 2 cut(s) 1451, 1475
AcoI YGGCCR 2 cut(s) 903, 1137
AcsI RAATTY 1 cut(s) 1279
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 4 cut(s) 224, 610, 839, 1392
AfiI CCNNNNNNNGG 5 cut(s) 240, 434, 862, 1135, 1517
AflIII ACRYGT 1 cut(s) 555
AgeI ACCGGT 1 cut(s) 266
AjnI CCWGG 5 cut(s) 157, 176, 586, 787, 1552
AleI CACNNNNGTG 1 cut(s) 776
AluBI AGCT 5 cut(s) 53, 324, 530, 694, 1178
AluI AGCT 5 cut(s) 53, 324, 530, 694, 1178
Alw21I GWGCWC 1 cut(s) 696
AlwI GGATC 2 cut(s) 1451, 1475
AlwNI CAGNNNCTG 1 cut(s) 509
Aor13HI TCCGGA 1 cut(s) 261
AoxI GGCC 6 cut(s) 161, 316, 349, 396, 903, 1137
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 1 cut(s) 1279
AseI ATTAAT 1 cut(s) 522
AsiGI ACCGGT 1 cut(s) 266
AspLEI GCGC 2 cut(s) 379, 682
AspS9I GGNCC 4 cut(s) 161, 264, 281, 396
AsuHPI GGTGA 5 cut(s) 199, 331, 500, 805, 1210
AvaII GGWCC 2 cut(s) 264, 281
BalI TGGCCA 1 cut(s) 1139
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 696
BarI GAAGNNNNNNTAC 2 cut(s) 1003, 1035
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 664
BccI CCATC 5 cut(s) 149, 272, 350, 1519, 1538
BceAI ACGGC 4 cut(s) 427, 866, 918, 1113
BciT130I CCWGG 5 cut(s) 159, 178, 588, 789, 1554
BciVI GTATCC 2 cut(s) 260, 456
BfaI CTAG 3 cut(s) 1085, 1104, 1206
BfuI GTATCC 2 cut(s) 260, 456
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 3 cut(s) 622, 678, 849
BlsI GCNGC 3 cut(s) 623, 679, 850
BmcAI AGTACT 1 cut(s) 839
Bme1390I CCNGG 5 cut(s) 159, 178, 588, 789, 1554
Bme18I GGWCC 2 cut(s) 264, 281
BmgT120I GGNCC 4 cut(s) 161, 264, 281, 396
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 5 cut(s) 159, 178, 588, 789, 1554
BmrI ACTGGG 2 cut(s) 1371, 1382
BmsI GCATC 4 cut(s) 14, 553, 675, 730
BmuI ACTGGG 2 cut(s) 1371, 1382
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 1284
Bpu10I CCTNAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 297
BsaJI CCNNGG 6 cut(s) 157, 158, 177, 406, 787, 900
BsaWI WCCGGW 2 cut(s) 261, 266
Bsc4I CCNNNNNNNGG 5 cut(s) 240, 434, 862, 1135, 1517
Bse118I RCCGGY 2 cut(s) 266, 1115
Bse1I ACTGG 5 cut(s) 245, 392, 1140, 1366, 1388
BseAI TCCGGA 1 cut(s) 261
BseBI CCWGG 5 cut(s) 159, 178, 588, 789, 1554
BseDI CCNNGG 6 cut(s) 157, 158, 177, 406, 787, 900
BseGI GGATG 2 cut(s) 583, 1530
BseLI CCNNNNNNNGG 5 cut(s) 240, 434, 862, 1135, 1517
BseMII CTCAG 3 cut(s) 933, 1021, 1368
BseNI ACTGG 5 cut(s) 245, 392, 1140, 1366, 1388
BseRI GAGGAG 1 cut(s) 954
BseXI GCAGC 1 cut(s) 664
BsgI GTGCAG 1 cut(s) 896
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 6 cut(s) 163, 318, 351, 398, 905, 1139
BshNI GGYRCC 1 cut(s) 547
BshTI ACCGGT 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 696
BsiSI CCGG 5 cut(s) 253, 262, 267, 711, 1116
BslFI GGGAC 3 cut(s) 1028, 1318, 1443
BslI CCNNNNNNNGG 5 cut(s) 240, 434, 862, 1135, 1517
BsmFI GGGAC 3 cut(s) 1028, 1318, 1443
BsnI GGCC 6 cut(s) 163, 318, 351, 398, 905, 1139
Bsp1286I GDGCHC 1 cut(s) 696
Bsp13I TCCGGA 1 cut(s) 261
Bsp143I GATC 2 cut(s) 1456, 1480
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 5 cut(s) 540, 621, 664, 816, 849
BspANI GGCC 6 cut(s) 163, 318, 351, 398, 905, 1139
BspCNI CTCAG 3 cut(s) 932, 1020, 1369
BspEI TCCGGA 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 549
BspPI GGATC 2 cut(s) 1451, 1475
BspQI GCTCTTC 2 cut(s) 684, 701
BspT107I GGYRCC 1 cut(s) 547
BsrFI RCCGGY 2 cut(s) 266, 1115
BsrI ACTGG 5 cut(s) 245, 392, 1140, 1366, 1388
BssAI RCCGGY 2 cut(s) 266, 1115
BssECI CCNNGG 6 cut(s) 157, 158, 177, 406, 787, 900
BssMI GATC 2 cut(s) 1456, 1480
BssNAI GTATAC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 406
Bst1107I GTATAC 1 cut(s) 331
Bst2UI CCWGG 5 cut(s) 159, 178, 588, 789, 1554
Bst4CI ACNGT 8 cut(s) 149, 193, 403, 581, 727, 992, 1078, 1339
Bst6I CTCTTC 2 cut(s) 684, 701
BstC8I GCNNGC 3 cut(s) 40, 375, 1275
BstDEI CTNAG 5 cut(s) 392, 919, 1007, 1377, 1461
BstDSI CCRYGG 2 cut(s) 406, 900
BstF5I GGATG 2 cut(s) 583, 1530
BstHHI GCGC 2 cut(s) 379, 682
BstKTI GATC 2 cut(s) 1459, 1483
BstMBI GATC 2 cut(s) 1456, 1480
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 357, 439
BstNI CCWGG 5 cut(s) 159, 178, 588, 789, 1554
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 5 cut(s) 157, 176, 586, 787, 1552
BstV1I GCAGC 1 cut(s) 664
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 1456
BstXI CCANNNNNNTGG 1 cut(s) 830
BstYI RGATCY 1 cut(s) 1456
BstZ17I GTATAC 1 cut(s) 331
BsuI GTATCC 2 cut(s) 260, 456
BsuRI GGCC 6 cut(s) 163, 318, 351, 398, 905, 1139
BtgI CCRYGG 2 cut(s) 406, 900
BtsCI GGATG 2 cut(s) 583, 1530
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 5 cut(s) 189, 238, 522, 1147, 1359
Cac8I GCNNGC 3 cut(s) 40, 375, 1275
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 2 cut(s) 379, 682
Cfr10I RCCGGY 2 cut(s) 266, 1115
Cfr13I GGNCC 4 cut(s) 161, 264, 281, 396
CpoI CGGWCCG 1 cut(s) 264
Csp6I GTAC 4 cut(s) 223, 609, 838, 1391
CspAI ACCGGT 1 cut(s) 266
CspCI CAANNNNNGTGG 2 cut(s) 1189, 1224
CspI CGGWCCG 1 cut(s) 264
CviAII CATG 6 cut(s) 215, 245, 374, 407, 1098, 1400
CviQI GTAC 4 cut(s) 223, 609, 838, 1391
DdeI CTNAG 5 cut(s) 392, 919, 1007, 1377, 1461
DpnI GATC 2 cut(s) 1458, 1482
DpnII GATC 2 cut(s) 1456, 1480
EaeI YGGCCR 2 cut(s) 903, 1137
Eam1104I CTCTTC 2 cut(s) 684, 701
EarI CTCTTC 2 cut(s) 684, 701
Ecl136II GAGCTC 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 264, 281
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 694
EcoRII CCWGG 5 cut(s) 157, 176, 586, 787, 1552
EcoT14I CCWWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 6 cut(s) 218, 248, 377, 410, 1101, 1403
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FaqI GGGAC 3 cut(s) 1028, 1318, 1443
FatI CATG 6 cut(s) 214, 244, 373, 406, 1097, 1399
FblI GTMKAC 2 cut(s) 330, 885
Fnu4HI GCNGC 3 cut(s) 622, 678, 849
FokI GGATG 2 cut(s) 570, 1517
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 3 cut(s) 622, 678, 849
FspAI RTGCGCAY 1 cut(s) 378
FspBI CTAG 3 cut(s) 1085, 1104, 1206
FspI TGCGCA 1 cut(s) 378
GlaI GCGC 2 cut(s) 378, 681
GluI GCNGC 3 cut(s) 622, 678, 849
GsuI CTGGAG 1 cut(s) 1284
HaeIII GGCC 6 cut(s) 163, 318, 351, 398, 905, 1139
HapII CCGG 5 cut(s) 253, 262, 267, 711, 1116
HhaI GCGC 2 cut(s) 379, 682
Hin1II CATG 6 cut(s) 218, 248, 377, 410, 1101, 1403
Hin6I GCGC 2 cut(s) 377, 680
HinP1I GCGC 2 cut(s) 377, 680
HincII GTYRAC 2 cut(s) 1093, 1147
HindII GTYRAC 2 cut(s) 1093, 1147
HinfI GANTC 1 cut(s) 13
HpaI GTTAAC 2 cut(s) 1093, 1147
HpaII CCGG 5 cut(s) 253, 262, 267, 711, 1116
HphI GGTGA 5 cut(s) 199, 331, 500, 805, 1210
Hpy166II GTNNAC 4 cut(s) 331, 886, 1093, 1147
Hpy188I TCNGA 5 cut(s) 505, 562, 1010, 1225, 1535
Hpy188III TCNNGA 3 cut(s) 262, 454, 1263
Hpy8I GTNNAC 4 cut(s) 331, 886, 1093, 1147
HpyAV CCTTC 2 cut(s) 53, 769
HpyCH4III ACNGT 8 cut(s) 149, 193, 403, 581, 727, 992, 1078, 1339
HpyCH4IV ACGT 2 cut(s) 555, 1152
HpyCH4V TGCA 5 cut(s) 913, 1037, 1110, 1354, 1399
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 439
HpyF3I CTNAG 5 cut(s) 392, 919, 1007, 1377, 1461
HpySE526I ACGT 2 cut(s) 555, 1152
Hsp92II CATG 6 cut(s) 218, 248, 377, 410, 1101, 1403
HspAI GCGC 2 cut(s) 377, 680
Kpn2I TCCGGA 1 cut(s) 261
KspAI GTTAAC 2 cut(s) 1093, 1147
Kzo9I GATC 2 cut(s) 1456, 1480
LguI GCTCTTC 2 cut(s) 684, 701
LmnI GCTCC 3 cut(s) 125, 604, 666
Lsp1109I GCAGC 1 cut(s) 664
LweI GCATC 4 cut(s) 14, 553, 675, 730
MaeI CTAG 3 cut(s) 1085, 1104, 1206
MaeII ACGT 2 cut(s) 555, 1152
MaeIII GTNAC 3 cut(s) 136, 205, 1153
MalI GATC 2 cut(s) 1458, 1482
MboI GATC 2 cut(s) 1456, 1480
MboII GAAGA 5 cut(s) 38, 194, 688, 691, 701
MfeI CAATTG 2 cut(s) 132, 1500
MflI RGATCY 1 cut(s) 1456
MhlI GDGCHC 1 cut(s) 696
MlsI TGGCCA 1 cut(s) 1139
MluNI TGGCCA 1 cut(s) 1139
MnlI CCTC 8 cut(s) 321, 350, 818, 862, 972, 975, 1231, 1259
Mox20I TGGCCA 1 cut(s) 1139
MroI TCCGGA 1 cut(s) 261
MscI TGGCCA 1 cut(s) 1139
MslI CAYNNNNRTG 3 cut(s) 243, 776, 1398
Msp20I TGGCCA 1 cut(s) 1139
MspI CCGG 5 cut(s) 253, 262, 267, 711, 1116
MspR9I CCNGG 5 cut(s) 159, 178, 588, 789, 1554
MunI CAATTG 2 cut(s) 132, 1500
MvaI CCWGG 5 cut(s) 159, 178, 588, 789, 1554
MwoI GCNNNNNNNGC 2 cut(s) 357, 439
NcoI CCATGG 1 cut(s) 406
NdeII GATC 2 cut(s) 1456, 1480
NlaIII CATG 6 cut(s) 218, 248, 377, 410, 1101, 1403
NlaIV GGNNCC 1 cut(s) 549
NmuCI GTSAC 2 cut(s) 205, 1153
NsbI TGCGCA 1 cut(s) 378
NspI RCATGY 1 cut(s) 377
OliI CACNNNNGTG 1 cut(s) 776
PaeI GCATGC 1 cut(s) 377
PasI CCCWGGG 1 cut(s) 158
PciSI GCTCTTC 2 cut(s) 684, 701
PfeI GAWTC 1 cut(s) 13
PflMI CCANNNNNTGG 2 cut(s) 240, 1517
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 3 cut(s) 623, 679, 850
PshBI ATTAAT 1 cut(s) 522
PsiI TTATAA 1 cut(s) 1329
Psp124BI GAGCTC 1 cut(s) 696
Psp6I CCWGG 5 cut(s) 157, 176, 586, 787, 1552
PspGI CCWGG 5 cut(s) 157, 176, 586, 787, 1552
PspN4I GGNNCC 1 cut(s) 549
PspPI GGNCC 4 cut(s) 161, 264, 281, 396
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 1456
RsaI GTAC 4 cut(s) 224, 610, 839, 1392
RsaNI GTAC 4 cut(s) 223, 609, 838, 1391
RseI CAYNNNNRTG 3 cut(s) 243, 776, 1398
Rsr2I CGGWCCG 1 cut(s) 264
RsrII CGGWCCG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 696
SapI GCTCTTC 2 cut(s) 684, 701
SatI GCNGC 3 cut(s) 622, 678, 849
Sau3AI GATC 2 cut(s) 1456, 1480
Sau96I GGNCC 4 cut(s) 161, 264, 281, 396
ScaI AGTACT 1 cut(s) 839
ScrFI CCNGG 5 cut(s) 159, 178, 588, 789, 1554
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 4 cut(s) 14, 553, 675, 730
SinI GGWCC 2 cut(s) 264, 281
SmiMI CAYNNNNRTG 3 cut(s) 243, 776, 1398
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
SphI GCATGC 1 cut(s) 377
SsiI CCGC 5 cut(s) 540, 621, 664, 816, 849
SspMI CTAG 3 cut(s) 1085, 1104, 1206
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 5 cut(s) 157, 176, 586, 787, 1552
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 8 cut(s) 149, 193, 403, 581, 727, 992, 1078, 1339
TaiI ACGT 2 cut(s) 558, 1155
TaqI TCGA 5 cut(s) 16, 73, 738, 967, 1334
TatI WGTACW 3 cut(s) 222, 837, 1390
TauI GCSGC 2 cut(s) 624, 851
TfiI GAWTC 1 cut(s) 13
TscAI CASTG 5 cut(s) 196, 245, 522, 1147, 1366
TseFI GTSAC 2 cut(s) 205, 1153
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 2 cut(s) 205, 1153
TspDTI ATGAA 2 cut(s) 540, 702
TspRI CASTG 5 cut(s) 196, 245, 522, 1147, 1366
Van91I CCANNNNNTGG 2 cut(s) 240, 1517
VpaK11BI GGWCC 2 cut(s) 264, 281
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 1 cut(s) 1279
XceI RCATGY 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 1518
XmiI GTMKAC 2 cut(s) 330, 885
XspI CTAG 3 cut(s) 1085, 1104, 1206
ZrmI AGTACT 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.