Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005270

Physical Location & Seq

Genomic Coordinates Reverse (-)

46737626 .. 46738345

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0349600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAGTATTTCTTCGATGCAGCCAACATGGTGAATGCCCACCAATATCCTTGTGCAAATGCATTCTTCACTGTAGTAGCAAAAATTCAAGAGGAACTGATGCGTGCAGCTACTAGTGAGGATTCATTTCTCAAACTTTTGACCACACCTCTACTCCAAAAGTTTGAAAAGTATTGGGAAAGCTGCTACATTATTTTAGCAGTTGCTGTAGTTTTCGATCCGAGGCTCAAAATGGCAATGGTACAGAAGGTCTTCTATCAAATCTATGGTGAGAATGCAGTGACACGGATGGAGATTGTTCATAATGCACTTTCTGACCTATGGTTTCAATATGCTTTGCCAGAAGAAACACCAACAGAAAATGAGGGTGTGAGCACCATCAAAACAGAGCCTCCAACTGCATCACAGGGAGAACAGCCTCTTGATCATACTTCCAATACTGATTTTGATATGATGGTGCGTTTATGGTGTGAACGCCAAAGAGCCCCCAAGAAGAAGACTTCGGAGTTGGACCAATATTTGGAAGAGACTTTATACGAGGTACCGGTTAAAGACTTTGATGTTCTGGTTTGGTGGATGCAAAACAAGGCCCGGTACCCGACTCTCTCTAGGATGGCTTCTGATGTCTTGGCCATACCACTGTCCACTCTTAATTCGGATTTTGTTTTTGACACTGCAATGTTAAAAACTATGGATAGTTCCTTGAGTTCCTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009832 GO:0009834 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0042546 GO:0044085 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

239

Amino Acids

27.54

Weight (kDa)

4.84

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	14 - 111	9.2e-25	hAT-like transposase, RNase-H fold
Dimer_Tnp_hAT	PF05699	169 - 235	3.5e-18	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38080 AT5G01190 AT5G01190
fragaria_vesca	FvH4_6g11960 FvH4_7g23980
malus_domestica	MD04G1147700.v1.1 MD07G1213300.v1.1 MD12G1161000.v1.1
prunus_persica	Prupe.2G245800_v2.0.a1 Prupe.6G271500_v2.0.a1
pyrus_communis	pycom04g13330
rosa_chinensis	RchiOBHm_Chr1g0369321 RchiOBHm_Chr3g0463771
rosa_laevigata	RLG00000024758 RLG00000027137
rosa_multiflora	Rmu_sc0001482.1_g000010 Rmu_sc0003267.1_g000044 Rmu_sc0004796.1_g000014
rosa_roxburghii	Rroxscaffold_4G00287730 Rroxscaffold_6G00416320
rosa_rugosa	Rorug01G0349600 Rorug03G0067400
rosa_samantha	Rh1BG320800 Rh1CG334800 Rh3AG124600 Rh3BG129200 Rh3DG129900
rosa_wichuraiana	Rw1G031500 Rw3G010530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	541, 594
AccB1I	GGYRCC	2 cut(s)	541, 594
AccB7I	CCANNNNNTGG	1 cut(s)	520
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	3 cut(s)	243, 543, 596
AfiI	CCNNNNNNNGG	1 cut(s)	520
AgeI	ACCGGT	1 cut(s)	544
AgsI	TTSAA	3 cut(s)	89, 167, 329
AhlI	ACTAGT	1 cut(s)	113
AluBI	AGCT	2 cut(s)	110, 183
AluI	AGCT	2 cut(s)	110, 183
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	212
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	588, 630
ApeKI	GCWGC	3 cut(s)	20, 107, 183
ApoI	RAATTY	1 cut(s)	84
AsiGI	ACCGGT	1 cut(s)	544
Asp700I	GAANNNNTTC	2 cut(s)	8, 251
Asp718I	GGTACC	2 cut(s)	541, 594
AspS9I	GGNCC	2 cut(s)	511, 589
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	43, 281
AvaII	GGWCC	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	632
BanI	GGYRCC	2 cut(s)	541, 594
BanII	GRGCYC	1 cut(s)	487
BbsI	GAAGAC	2 cut(s)	244, 503
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	3 cut(s)	32, 119, 170
BccI	CCATC	4 cut(s)	283, 386, 448, 607
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	521
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	2 cut(s)	114, 609
BfmI	CTRYAG	2 cut(s)	72, 207
BisI	GCNGC	3 cut(s)	21, 108, 184
BlsI	GCNGC	3 cut(s)	22, 109, 185
Bme1390I	CCNGG	1 cut(s)	592
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	511, 589
BmiI	GGNNCC	2 cut(s)	543, 596
BmrFI	CCNGG	1 cut(s)	592
BmsI	GCATC	4 cut(s)	7, 90, 410, 567
BpiI	GAAGAC	2 cut(s)	244, 503
BpuMI	CCSGG	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 376, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse118I	RCCGGY	1 cut(s)	544
Bse3DI	GCAATG	2 cut(s)	243, 684
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	3 cut(s)	294, 582, 618
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMI	GCAATG	2 cut(s)	243, 684
BseXI	GCAGC	3 cut(s)	32, 119, 170
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	590, 632
BshNI	GGYRCC	2 cut(s)	541, 594
BshTI	ACCGGT	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	2 cut(s)	545, 592
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	521
BsmI	GAATGC	3 cut(s)	40, 62, 280
BsnI	GGCC	2 cut(s)	590, 632
Bsp1286I	GDGCHC	2 cut(s)	377, 487
Bsp143I	GATC	2 cut(s)	217, 424
BspANI	GGCC	2 cut(s)	590, 632
BspLI	GGNNCC	2 cut(s)	543, 596
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	2 cut(s)	541, 594
BsrDI	GCAATG	2 cut(s)	243, 684
BsrFI	RCCGGY	1 cut(s)	544
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	217, 424
Bst4CI	ACNGT	2 cut(s)	73, 642
Bst6I	CTCTTC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	105
BstF5I	GGATG	3 cut(s)	294, 582, 618
BstKTI	GATC	2 cut(s)	220, 427
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	2 cut(s)	217, 424
BstSCI	CCNGG	1 cut(s)	590
BstSFI	CTRYAG	2 cut(s)	72, 207
BstV1I	GCAGC	3 cut(s)	32, 119, 170
BstV2I	GAAGAC	2 cut(s)	244, 503
BsuRI	GGCC	2 cut(s)	590, 632
BtsCI	GGATG	3 cut(s)	294, 582, 618
BtsI	GCAGTG	2 cut(s)	285, 672
BtsIMutI	CAGTG	4 cut(s)	69, 285, 638, 672
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	511, 589
Csp6I	GTAC	3 cut(s)	242, 542, 595
CspAI	ACCGGT	1 cut(s)	544
CviAII	CATG	1 cut(s)	28
CviQI	GTAC	3 cut(s)	242, 542, 595
DpnI	GATC	2 cut(s)	219, 426
DpnII	GATC	2 cut(s)	217, 424
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	511
EcoT22I	ATGCAT	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	487
FaeI	CATG	1 cut(s)	31
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	1 cut(s)	27
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	21, 108, 184
FokI	GGATG	3 cut(s)	301, 589, 625
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	3 cut(s)	21, 108, 184
FspBI	CTAG	2 cut(s)	114, 609
GluI	GCNGC	3 cut(s)	21, 108, 184
HaeIII	GGCC	2 cut(s)	590, 632
HapII	CCGG	2 cut(s)	545, 592
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	2 cut(s)	122, 601
HpaII	CCGG	2 cut(s)	545, 592
HphI	GGTGA	2 cut(s)	43, 281
Hpy166II	GTNNAC	2 cut(s)	473, 645
Hpy188I	TCNGA	5 cut(s)	222, 316, 505, 622, 658
Hpy188III	TCNNGA	2 cut(s)	89, 422
Hpy8I	GTNNAC	2 cut(s)	473, 645
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	73, 642
HpyCH4V	TGCA	9 cut(s)	20, 56, 62, 107, 278, 308, 401, 580, 677
Hsp92II	CATG	1 cut(s)	31
KpnI	GGTACC	2 cut(s)	545, 598
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	217, 424
LpnPI	CCDG	5 cut(s)	354, 392, 551, 558, 605
Lsp1109I	GCAGC	3 cut(s)	32, 119, 170
LweI	GCATC	4 cut(s)	7, 90, 410, 567
MaeI	CTAG	2 cut(s)	114, 609
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	219, 426
MboI	GATC	2 cut(s)	217, 424
MboII	GAAGA	7 cut(s)	4, 58, 244, 356, 505, 508, 536
MhlI	GDGCHC	2 cut(s)	377, 487
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	2 cut(s)	84, 652
MluNI	TGGCCA	1 cut(s)	632
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	2 cut(s)	419, 489
MnlI	CCTC	8 cut(s)	85, 112, 159, 216, 358, 402, 429, 532
Mox20I	TGGCCA	1 cut(s)	632
Mph1103I	ATGCAT	1 cut(s)	64
MroXI	GAANNNNTTC	2 cut(s)	8, 251
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	4 cut(s)	549, 651, 683, 718
MslI	CAYNNNNRTG	1 cut(s)	677
Msp20I	TGGCCA	1 cut(s)	632
MspI	CCGG	2 cut(s)	545, 592
MspR9I	CCNGG	1 cut(s)	592
Mva1269I	GAATGC	3 cut(s)	40, 62, 280
NciI	CCSGG	1 cut(s)	592
NdeII	GATC	2 cut(s)	217, 424
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	2 cut(s)	543, 596
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	64
PctI	GAATGC	3 cut(s)	40, 62, 280
PdmI	GAANNNNTTC	2 cut(s)	8, 251
PfeI	GAWTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	520
PinAI	ACCGGT	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	22, 109, 185
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PspN4I	GGNNCC	2 cut(s)	543, 596
PspPI	GGNCC	2 cut(s)	511, 589
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	3 cut(s)	243, 543, 596
RsaNI	GTAC	3 cut(s)	242, 542, 595
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	4 cut(s)	549, 651, 683, 718
SatI	GCNGC	3 cut(s)	21, 108, 184
Sau3AI	GATC	2 cut(s)	217, 424
Sau96I	GGNCC	2 cut(s)	511, 589
SchI	GAGTC	1 cut(s)	595
ScrFI	CCNGG	1 cut(s)	592
SduI	GDGCHC	2 cut(s)	377, 487
SetI	ASST	6 cut(s)	112, 151, 185, 252, 321, 543
SfaNI	GCATC	4 cut(s)	7, 90, 410, 567
SfcI	CTRYAG	2 cut(s)	72, 207
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	2 cut(s)	84, 652
SspI	AATATT	1 cut(s)	518
SspMI	CTAG	2 cut(s)	114, 609
StyD4I	CCNGG	1 cut(s)	590
TaaI	ACNGT	2 cut(s)	73, 642
TaqI	TCGA	2 cut(s)	15, 216
TasI	AATT	2 cut(s)	84, 652
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	4 cut(s)	549, 651, 683, 718
Tru9I	TTAA	4 cut(s)	549, 651, 683, 718
TscAI	CASTG	4 cut(s)	76, 285, 645, 679
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	20, 107, 183
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	17, 114, 290
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	4 cut(s)	76, 285, 645, 679
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	1 cut(s)	84
XmnI	GAANNNNTTC	2 cut(s)	8, 251
XspI	CTAG	2 cut(s)	114, 609
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.