Rw3G010530

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
10165720 .. 10168966
3247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010530.1

Sequence Viewer

Length: 1371 bp
ATGGCATTGTGGATTCGAGTGCTTCTACTTCTCTTGGCTTGCCTTCTTCCAGCTTTGGTTGAGAGCAGTGTTCGACACTACAAGTTTAATGTGGTGCTGAAAAACACTACCAGACTATGCTCCACCAAGCCAATTGTAACCATCAACGGTCGTTTCCCAGGGCCAACTCTCTATGCCAGGGAAGACGACACCGTTCTTGTCAAAGTCACCAACCATGTCAAGTACAATGTTTCCATTCACTGGCATGGTATCCGGCAACTCCGGACCGGTTGGGCAGATGGACCAGCATACATCACACAGTGCCCTATTCCTCAAGGCCAAAGCTATGTATACAACTTCACCATCACAGGCCAAAGAGGCACACTTCTTTGGCATGCGCATATTCTCTGGCTTAGGGCCACAGTCCATGGTGCTCTTGTCATTTTGCCCAAGCGTGGTGTGCCGTATCCTTTCCCGACACCCCACAAGGAAGTTCCTGTTGTATTAGGTGAATGGTGGAAATCAGATACTGAAGCAGTGATTAATGAAGCTCTCAAAGGCGGTGTAGCACCTAACGTGTCAGATGCTCACACTATTAACGGTCATCCAGGCTTTGTCGCTCCAAATTGTACCACACAGGGCGGCTTCAAGTTGTCTGTGGAAAGTGGCAAGACTTACTTGCTCCGCATCATCAATGCTGCGCTCAATGAAGAGCTCTTCTTCAAAATTGCCGGACACAGTTTGACGGTGGTGGAAGTCGATGCCACCTATGTAAAACCCTTCAAAATTGACACCATAGTGATTGCCCCTGGACAAACCACCAATGCCCTTATCACCGCAAACCAAAACTCCGGCAAGTACTTGGTCGCCGCCTCTCCCTTCTTGGACACTCCTGCTGTTGCCGTAGACAACCTGACTGCCACGGCCACTCTGCACTACTCAGGCACACTTTCTAACTCGCCCACAACTCTCACTAGCCCCCCTCCTCGAAACGCTACCCAAGTCGCCAACAGTTTTATCGACTCTCTCAGAAGCCTTAATACAAAGACCTTTCCTGCAAAAGTCCCCTTAAAAATTGACCACAGCCTTTACTTCACAGTTGGGCTAGGGGTTAACCCATGTCCTAGTTGCAAAGCCGGTAATGGAAGCCGTGTGGTGGCCAGTGTTAACAACGTCACATTTGTTATGCCAACCACAGCTCTGCTTCAAGCACATTTTTTCAACACTAGTGGGGTTTTCACCTCTGATTTTCCTGCTAACCCACCAAATGCTTTCAATTTTTCTGGAGGTTGCCAGCAAATTCAAGTTTGGCGACTACAAATGGGACAAAGGTTTATAGGTTGGCTTATAACTCGACTGTTCAGCTTGTTATGCAAGACACTGGGGTTATAG

Protein Analysis

456

Amino Acids

49.75

Weight (kDa)

9.51

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 34 - 144 1.3e-40 Multicopper oxidase
Cu-oxidase PF00394 157 - 308 2.6e-47 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1328
Acc16I TGCGCA 1 cut(s) 378
AccB7I CCANNNNNTGG 1 cut(s) 240
AccI GTMKAC 2 cut(s) 330, 885
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 5 cut(s) 540, 621, 664, 816, 849
AcoI YGGCCR 2 cut(s) 903, 1137
AcsI RAATTY 1 cut(s) 1278
AcuI CTGAAG 1 cut(s) 531
AdeI CACNNNGTG 1 cut(s) 300
AfaI GTAC 3 cut(s) 224, 610, 839
AfiI CCNNNNNNNGG 3 cut(s) 240, 434, 1135
AflIII ACRYGT 1 cut(s) 555
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 7 cut(s) 628, 703, 763, 1187, 1201, 1255, 1283
AhlI ACTAGT 1 cut(s) 1205
AjnI CCWGG 4 cut(s) 157, 176, 586, 787
AleI CACNNNNGTG 1 cut(s) 776
AluBI AGCT 6 cut(s) 53, 324, 530, 694, 1178, 1344
AluI AGCT 6 cut(s) 53, 324, 530, 694, 1178, 1344
Alw21I GWGCWC 2 cut(s) 415, 696
AlwNI CAGNNNCTG 1 cut(s) 509
Aor13HI TCCGGA 1 cut(s) 261
AoxI GGCC 6 cut(s) 161, 316, 349, 396, 903, 1137
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 1 cut(s) 1278
AseI ATTAAT 1 cut(s) 522
AsiGI ACCGGT 1 cut(s) 266
AspLEI GCGC 2 cut(s) 379, 682
AspS9I GGNCC 4 cut(s) 161, 264, 281, 396
AsuHPI GGTGA 5 cut(s) 199, 331, 500, 805, 1210
AvaII GGWCC 2 cut(s) 264, 281
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 1139
BanII GRGCYC 1 cut(s) 696
BarI GAAGNNNNNNTAC 2 cut(s) 1003, 1035
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 415, 696
BbvI GCAGC 1 cut(s) 664
BccI CCATC 3 cut(s) 149, 272, 350
BceAI ACGGC 4 cut(s) 427, 866, 918, 1113
BciT130I CCWGG 4 cut(s) 159, 178, 588, 789
BciVI GTATCC 2 cut(s) 260, 456
BcuI ACTAGT 1 cut(s) 1205
BfaI CTAG 4 cut(s) 954, 1085, 1104, 1206
BfuI GTATCC 2 cut(s) 260, 456
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 3 cut(s) 622, 678, 849
BlsI GCNGC 3 cut(s) 623, 679, 850
BmcAI AGTACT 1 cut(s) 839
Bme1390I CCNGG 4 cut(s) 159, 178, 588, 789
Bme18I GGWCC 2 cut(s) 264, 281
BmgT120I GGNCC 4 cut(s) 161, 264, 281, 396
BmrFI CCNGG 4 cut(s) 159, 178, 588, 789
BmrI ACTGGG 1 cut(s) 1370
BmsI GCATC 3 cut(s) 553, 675, 730
BmuI ACTGGG 1 cut(s) 1370
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 1284
Bpu10I CCTNAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 297
BsaJI CCNNGG 6 cut(s) 157, 158, 177, 406, 787, 900
BsaWI WCCGGW 2 cut(s) 261, 266
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 434, 1135
Bse118I RCCGGY 2 cut(s) 266, 1115
Bse1I ACTGG 3 cut(s) 245, 1140, 1365
BseAI TCCGGA 1 cut(s) 261
BseBI CCWGG 4 cut(s) 159, 178, 588, 789
BseDI CCNNGG 6 cut(s) 157, 158, 177, 406, 787, 900
BseGI GGATG 1 cut(s) 583
BseLI CCNNNNNNNGG 3 cut(s) 240, 434, 1135
BseMII CTCAG 2 cut(s) 933, 1021
BseNI ACTGG 3 cut(s) 245, 1140, 1365
BseRI GAGGAG 1 cut(s) 954
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 1 cut(s) 664
BsgI GTGCAG 1 cut(s) 896
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 6 cut(s) 163, 318, 351, 398, 905, 1139
BshTI ACCGGT 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 2 cut(s) 415, 696
BsiSI CCGG 6 cut(s) 253, 262, 267, 711, 831, 1116
BslFI GGGAC 2 cut(s) 1028, 1317
BslI CCNNNNNNNGG 3 cut(s) 240, 434, 1135
BsmFI GGGAC 2 cut(s) 1028, 1317
BsnI GGCC 6 cut(s) 163, 318, 351, 398, 905, 1139
Bsp1286I GDGCHC 3 cut(s) 305, 415, 696
Bsp13I TCCGGA 1 cut(s) 261
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 5 cut(s) 540, 621, 664, 816, 849
BspANI GGCC 6 cut(s) 163, 318, 351, 398, 905, 1139
BspCNI CTCAG 2 cut(s) 932, 1020
BspEI TCCGGA 1 cut(s) 261
BspQI GCTCTTC 2 cut(s) 684, 701
BsrFI RCCGGY 2 cut(s) 266, 1115
BsrI ACTGG 3 cut(s) 245, 1140, 1365
BssAI RCCGGY 2 cut(s) 266, 1115
BssECI CCNNGG 6 cut(s) 157, 158, 177, 406, 787, 900
BssNAI GTATAC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 406
Bst1107I GTATAC 1 cut(s) 331
Bst2UI CCWGG 4 cut(s) 159, 178, 588, 789
Bst6I CTCTTC 2 cut(s) 684, 701
BstC8I GCNNGC 3 cut(s) 40, 375, 1274
BstDEI CTNAG 3 cut(s) 392, 919, 1007
BstDSI CCRYGG 2 cut(s) 406, 900
BstF5I GGATG 1 cut(s) 583
BstHHI GCGC 2 cut(s) 379, 682
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 3 cut(s) 357, 439, 1350
BstNI CCWGG 4 cut(s) 159, 178, 588, 789
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 4 cut(s) 157, 176, 586, 787
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 664
BstV2I GAAGAC 1 cut(s) 189
BstZ17I GTATAC 1 cut(s) 331
BsuI GTATCC 2 cut(s) 260, 456
BsuRI GGCC 6 cut(s) 163, 318, 351, 398, 905, 1139
BtgI CCRYGG 2 cut(s) 406, 900
BtsCI GGATG 1 cut(s) 583
BtsI GCAGTG 2 cut(s) 73, 522
BtsIMutI CAGTG 6 cut(s) 73, 238, 305, 522, 1147, 1358
Cac8I GCNNGC 3 cut(s) 40, 375, 1274
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 2 cut(s) 379, 682
Cfr10I RCCGGY 2 cut(s) 266, 1115
Cfr13I GGNCC 4 cut(s) 161, 264, 281, 396
CpoI CGGWCCG 1 cut(s) 264
Csp6I GTAC 3 cut(s) 223, 609, 838
CspAI ACCGGT 1 cut(s) 266
CspCI CAANNNNNGTGG 2 cut(s) 1189, 1224
CspI CGGWCCG 1 cut(s) 264
CviAII CATG 5 cut(s) 215, 245, 374, 407, 1098
CviQI GTAC 3 cut(s) 223, 609, 838
DdeI CTNAG 3 cut(s) 392, 919, 1007
DraIII CACNNNGTG 1 cut(s) 300
EaeI YGGCCR 2 cut(s) 903, 1137
Eam1104I CTCTTC 2 cut(s) 684, 701
EarI CTCTTC 2 cut(s) 684, 701
Ecl136II GAGCTC 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 264, 281
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 694
EcoRII CCWGG 4 cut(s) 157, 176, 586, 787
EcoT14I CCWWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 5 cut(s) 218, 248, 377, 410, 1101
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FaqI GGGAC 2 cut(s) 1028, 1317
FatI CATG 5 cut(s) 214, 244, 373, 406, 1097
FblI GTMKAC 2 cut(s) 330, 885
Fnu4HI GCNGC 3 cut(s) 622, 678, 849
FokI GGATG 1 cut(s) 570
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 3 cut(s) 622, 678, 849
FspAI RTGCGCAY 1 cut(s) 378
FspBI CTAG 4 cut(s) 954, 1085, 1104, 1206
FspI TGCGCA 1 cut(s) 378
GlaI GCGC 2 cut(s) 378, 681
GluI GCNGC 3 cut(s) 622, 678, 849
GsuI CTGGAG 1 cut(s) 1284
HaeIII GGCC 6 cut(s) 163, 318, 351, 398, 905, 1139
HapII CCGG 6 cut(s) 253, 262, 267, 711, 831, 1116
HhaI GCGC 2 cut(s) 379, 682
Hin1II CATG 5 cut(s) 218, 248, 377, 410, 1101
Hin6I GCGC 2 cut(s) 377, 680
HinP1I GCGC 2 cut(s) 377, 680
HincII GTYRAC 2 cut(s) 1093, 1147
HindII GTYRAC 2 cut(s) 1093, 1147
HinfI GANTC 2 cut(s) 13, 1001
HpaI GTTAAC 2 cut(s) 1093, 1147
HpaII CCGG 6 cut(s) 253, 262, 267, 711, 831, 1116
HphI GGTGA 5 cut(s) 199, 331, 500, 805, 1210
Hpy166II GTNNAC 4 cut(s) 331, 886, 1093, 1147
Hpy188I TCNGA 4 cut(s) 505, 562, 1010, 1225
Hpy188III TCNNGA 3 cut(s) 262, 454, 1263
Hpy8I GTNNAC 4 cut(s) 331, 886, 1093, 1147
HpyAV CCTTC 3 cut(s) 53, 769, 868
HpyCH4IV ACGT 2 cut(s) 555, 1152
HpyCH4V TGCA 4 cut(s) 913, 1037, 1110, 1353
HpyF10VI GCNNNNNNNGC 3 cut(s) 357, 439, 1350
HpyF3I CTNAG 3 cut(s) 392, 919, 1007
HpySE526I ACGT 2 cut(s) 555, 1152
Hsp92II CATG 5 cut(s) 218, 248, 377, 410, 1101
HspAI GCGC 2 cut(s) 377, 680
Kpn2I TCCGGA 1 cut(s) 261
KspAI GTTAAC 2 cut(s) 1093, 1147
LguI GCTCTTC 2 cut(s) 684, 701
LmnI GCTCC 3 cut(s) 125, 604, 666
Lsp1109I GCAGC 1 cut(s) 664
LweI GCATC 3 cut(s) 553, 675, 730
MaeI CTAG 4 cut(s) 954, 1085, 1104, 1206
MaeII ACGT 2 cut(s) 555, 1152
MaeIII GTNAC 3 cut(s) 136, 205, 1153
MboII GAAGA 5 cut(s) 38, 194, 688, 691, 701
MfeI CAATTG 1 cut(s) 132
MhlI GDGCHC 3 cut(s) 305, 415, 696
MlsI TGGCCA 1 cut(s) 1139
MluCI AATT 7 cut(s) 132, 604, 705, 765, 1053, 1255, 1278
MluNI TGGCCA 1 cut(s) 1139
MlyI GAGTC 1 cut(s) 995
MnlI CCTC 7 cut(s) 321, 350, 862, 972, 975, 1231, 1259
Mox20I TGGCCA 1 cut(s) 1139
MroI TCCGGA 1 cut(s) 261
MscI TGGCCA 1 cut(s) 1139
MseI TTAA 7 cut(s) 87, 522, 576, 1017, 1049, 1092, 1146
MslI CAYNNNNRTG 2 cut(s) 243, 776
Msp20I TGGCCA 1 cut(s) 1139
MspI CCGG 6 cut(s) 253, 262, 267, 711, 831, 1116
MspR9I CCNGG 4 cut(s) 159, 178, 588, 789
MunI CAATTG 1 cut(s) 132
MvaI CCWGG 4 cut(s) 159, 178, 588, 789
MwoI GCNNNNNNNGC 3 cut(s) 357, 439, 1350
NcoI CCATGG 1 cut(s) 406
NlaIII CATG 5 cut(s) 218, 248, 377, 410, 1101
NmuCI GTSAC 2 cut(s) 205, 1153
NsbI TGCGCA 1 cut(s) 378
NspI RCATGY 1 cut(s) 377
OliI CACNNNNGTG 1 cut(s) 776
PaeI GCATGC 1 cut(s) 377
PasI CCCWGGG 1 cut(s) 158
PciSI GCTCTTC 2 cut(s) 684, 701
PfeI GAWTC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 240
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 3 cut(s) 623, 679, 850
PleI GAGTC 1 cut(s) 995
PpsI GAGTC 1 cut(s) 995
PshBI ATTAAT 1 cut(s) 522
PsiI TTATAA 1 cut(s) 1328
Psp124BI GAGCTC 1 cut(s) 696
Psp6I CCWGG 4 cut(s) 157, 176, 586, 787
PspGI CCWGG 4 cut(s) 157, 176, 586, 787
PspPI GGNCC 4 cut(s) 161, 264, 281, 396
PstNI CAGNNNCTG 1 cut(s) 509
RsaI GTAC 3 cut(s) 224, 610, 839
RsaNI GTAC 3 cut(s) 223, 609, 838
RseI CAYNNNNRTG 2 cut(s) 243, 776
Rsr2I CGGWCCG 1 cut(s) 264
RsrII CGGWCCG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 696
SapI GCTCTTC 2 cut(s) 684, 701
SaqAI TTAA 7 cut(s) 87, 522, 576, 1017, 1049, 1092, 1146
SatI GCNGC 3 cut(s) 622, 678, 849
Sau96I GGNCC 4 cut(s) 161, 264, 281, 396
ScaI AGTACT 1 cut(s) 839
SchI GAGTC 1 cut(s) 995
ScrFI CCNGG 4 cut(s) 159, 178, 588, 789
SduI GDGCHC 3 cut(s) 305, 415, 696
SfaNI GCATC 3 cut(s) 553, 675, 730
SinI GGWCC 2 cut(s) 264, 281
SmiMI CAYNNNNRTG 2 cut(s) 243, 776
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
SpeI ACTAGT 1 cut(s) 1205
SphI GCATGC 1 cut(s) 377
Sse9I AATT 7 cut(s) 132, 604, 705, 765, 1053, 1255, 1278
SsiI CCGC 5 cut(s) 540, 621, 664, 816, 849
SspMI CTAG 4 cut(s) 954, 1085, 1104, 1206
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 4 cut(s) 157, 176, 586, 787
StyI CCWWGG 1 cut(s) 406
TaiI ACGT 2 cut(s) 558, 1155
TaqI TCGA 6 cut(s) 16, 73, 738, 967, 999, 1333
TasI AATT 7 cut(s) 132, 604, 705, 765, 1053, 1255, 1278
TatI WGTACW 2 cut(s) 222, 837
TauI GCSGC 2 cut(s) 624, 851
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 7 cut(s) 87, 522, 576, 1017, 1049, 1092, 1146
Tru9I TTAA 7 cut(s) 87, 522, 576, 1017, 1049, 1092, 1146
TscAI CASTG 6 cut(s) 73, 245, 305, 522, 1147, 1365
TseFI GTSAC 2 cut(s) 205, 1153
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 2 cut(s) 205, 1153
TspDTI ATGAA 2 cut(s) 540, 702
TspRI CASTG 6 cut(s) 73, 245, 305, 522, 1147, 1365
Van91I CCANNNNNTGG 1 cut(s) 240
VpaK11BI GGWCC 2 cut(s) 264, 281
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 1 cut(s) 1278
XceI RCATGY 1 cut(s) 377
XmiI GTMKAC 2 cut(s) 330, 885
XspI CTAG 4 cut(s) 954, 1085, 1104, 1206
ZrmI AGTACT 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.