Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005270

Physical Location & Seq

Genomic Coordinates Forward (+)

5105764 .. 5106553

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0067400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTTTGAAGACTTGGTAGACATAGATATCAGTGATACAAGGAGTTACATGGAGCCTATGAGCAATGAAGATGATGCTAGTGAGGATGAAGACTATAATCCATGTAGGGATGATGAAGACTATGCTAATTATGGTGTTGATGATGACTGGTTGGATAATGTGGAATGTGAAGAGAATGAAAAGATTGGGGAGAAGCATGAGCAAGCTACTGCATCTGTTGGAACAAGTGCTGGAAAGAGGAAGAGAAAGAAGAAAGATGCAAAGTCATATGAGCAAGCTAGTGTTGGAACAAGTGTTGATATAGATGAGAACATGGAGGTTGAAGATAGTAAGCCAATGTATGGGACTCTGGACTCTGATGAAGAGGGGATTGGACATGAAGCAAACTTAGATGATAAGGGAGATGATGTGCAAAGGGAGAAGGCAATACAAAAGGGTTGGGAGGCTATGTTTGTGAAGAGTGATAAAGTGAGAGTGAGGGTGATCTGCAAAGAAAAACACTGCCCTTTTGAGCTGTTTACCTTTAAGATGCAGCATGAAGACACTCTGATGATCAAGACATACAATGGTGAACACAAGTTTGCAAGGGTGCTAGAAAATAGCATGGTTAGGACCCCTAATCTGACTAAAAAGCTTATTGATCAGATAAAGCTTAACCCTGATTGGTCTATAGATAGTTTCCCCAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009832 GO:0009834 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0042546 GO:0044085 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

230

Amino Acids

26.49

Weight (kDa)

4.54

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38080 AT5G01190 AT5G01190
fragaria_vesca	FvH4_6g11960 FvH4_7g23980
malus_domestica	MD04G1147700.v1.1 MD07G1213300.v1.1 MD12G1161000.v1.1
prunus_persica	Prupe.2G245800_v2.0.a1 Prupe.6G271500_v2.0.a1
pyrus_communis	pycom04g13330
rosa_chinensis	RchiOBHm_Chr1g0369321 RchiOBHm_Chr3g0463771
rosa_laevigata	RLG00000024758 RLG00000027137
rosa_multiflora	Rmu_sc0001482.1_g000010 Rmu_sc0003267.1_g000044 Rmu_sc0004796.1_g000014
rosa_roxburghii	Rroxscaffold_4G00287730 Rroxscaffold_6G00416320
rosa_rugosa	Rorug01G0349600 Rorug03G0067400
rosa_samantha	Rh1BG320800 Rh1CG334800 Rh3AG124600 Rh3BG129200 Rh3DG129900
rosa_wichuraiana	Rw1G031500 Rw3G010530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	8, 323
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	5 cut(s)	206, 278, 514, 634, 652
AluI	AGCT	5 cut(s)	206, 278, 514, 634, 652
ApeKI	GCWGC	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	612
AsuHPI	GGTGA	2 cut(s)	493, 581
AvaII	GGWCC	1 cut(s)	612
BbsI	GAAGAC	4 cut(s)	15, 96, 123, 546
BbvI	GCAGC	1 cut(s)	544
BclI	TGATCA	2 cut(s)	552, 640
BfaI	CTAG	3 cut(s)	78, 279, 593
BfmI	CTRYAG	1 cut(s)	669
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	2 cut(s)	54, 614
BmsI	GCATC	4 cut(s)	64, 221, 247, 519
BpiI	GAAGAC	4 cut(s)	15, 96, 123, 546
BsaXI	ACNNNNNCTCC	4 cut(s)	393, 423, 434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	91, 115
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	544
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	483, 552, 640
BspLI	GGNNCC	2 cut(s)	54, 614
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	3 cut(s)	483, 552, 640
Bst6I	CTCTTC	4 cut(s)	165, 236, 357, 452
BstC8I	GCNNGC	2 cut(s)	204, 276
BstDEI	CTNAG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	91, 115
BstKTI	GATC	3 cut(s)	486, 555, 643
BstMBI	GATC	3 cut(s)	483, 552, 640
BstSFI	CTRYAG	1 cut(s)	669
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	4 cut(s)	15, 96, 123, 546
BtsCI	GGATG	2 cut(s)	91, 115
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	37, 499
Cac8I	GCNNGC	2 cut(s)	204, 276
Cfr13I	GGNCC	1 cut(s)	612
CviAII	CATG	7 cut(s)	49, 102, 197, 313, 377, 536, 604
CviJI	RGCY	8 cut(s)	55, 206, 278, 334, 446, 514, 634, 652
CviKI_1	RGCY	8 cut(s)	55, 206, 278, 334, 446, 514, 634, 652
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	3 cut(s)	485, 554, 642
DpnII	GATC	3 cut(s)	483, 552, 640
Eam1104I	CTCTTC	4 cut(s)	165, 236, 357, 452
EarI	CTCTTC	4 cut(s)	165, 236, 357, 452
Eco32I	GATATC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	612
EcoRV	GATATC	1 cut(s)	28
FaeI	CATG	7 cut(s)	52, 105, 200, 316, 380, 539, 607
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	7 cut(s)	48, 101, 196, 312, 376, 535, 603
FauNDI	CATATG	1 cut(s)	268
FbaI	TGATCA	2 cut(s)	552, 640
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	2 cut(s)	98, 122
Fsp4HI	GCNGC	1 cut(s)	533
FspBI	CTAG	3 cut(s)	78, 279, 593
GluI	GCNGC	1 cut(s)	533
Hin1II	CATG	7 cut(s)	52, 105, 200, 316, 380, 539, 607
HindIII	AAGCTT	2 cut(s)	632, 650
HinfI	GANTC	2 cut(s)	346, 353
HphI	GGTGA	2 cut(s)	493, 581
Hpy166II	GTNNAC	3 cut(s)	19, 519, 572
Hpy188I	TCNGA	4 cut(s)	358, 549, 624, 645
Hpy188III	TCNNGA	2 cut(s)	350, 556
Hpy8I	GTNNAC	3 cut(s)	19, 519, 572
HpyAV	CCTTC	1 cut(s)	415
HpyCH4V	TGCA	6 cut(s)	212, 260, 412, 489, 532, 584
HpyF3I	CTNAG	1 cut(s)	388
Hsp92II	CATG	7 cut(s)	52, 105, 200, 316, 380, 539, 607
Ksp22I	TGATCA	2 cut(s)	552, 640
Kzo9I	GATC	3 cut(s)	483, 552, 640
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	4 cut(s)	133, 216, 335, 672
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	4 cut(s)	64, 221, 247, 519
MaeI	CTAG	3 cut(s)	78, 279, 593
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	485, 554, 642
MboI	GATC	3 cut(s)	483, 552, 640
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	2 cut(s)	340, 347
MmeI	TCCRAC	3 cut(s)	132, 199, 265
MnlI	CCTC	6 cut(s)	76, 231, 310, 358, 436, 471
MseI	TTAA	2 cut(s)	525, 654
MslI	CAYNNNNRTG	1 cut(s)	548
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	483, 552, 640
NlaIII	CATG	7 cut(s)	52, 105, 200, 316, 380, 539, 607
NlaIV	GGNNCC	2 cut(s)	54, 614
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	534
PleI	GAGTC	2 cut(s)	340, 347
PpsI	GAGTC	2 cut(s)	340, 347
PpuMI	RGGWCCY	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	612
PspN4I	GGNNCC	2 cut(s)	54, 614
PspPI	GGNCC	1 cut(s)	612
PspPPI	RGGWCCY	1 cut(s)	612
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	525, 654
SatI	GCNGC	1 cut(s)	533
Sau3AI	GATC	3 cut(s)	483, 552, 640
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	2 cut(s)	340, 347
SetI	ASST	7 cut(s)	208, 280, 321, 516, 524, 636, 654
SfaNI	GCATC	4 cut(s)	64, 221, 247, 519
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	548
Sse9I	AATT	1 cut(s)	127
SspMI	CTAG	3 cut(s)	78, 279, 593
TasI	AATT	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	525, 654
Tru9I	TTAA	2 cut(s)	525, 654
TscAI	CASTG	2 cut(s)	37, 506
TseI	GCWGC	1 cut(s)	532
TspDTI	ATGAA	7 cut(s)	81, 102, 129, 192, 375, 393, 552
TspRI	CASTG	2 cut(s)	37, 506
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	612
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	3 cut(s)	78, 279, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.