AT5G01780
ERF Family

2OG-Fe(II) oxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007643
Physical Location & Seq
Reverse (-)
302098 .. 304279
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01780.5

Sequence Viewer

Length: 1164 bp
ATGTTGAACTCTATCCATCGCTCGTTTCATCTTACTTCCCGCCACCAGATCGTCCTTCGGCTGTGCTCTCCGTCGGCGAGTAGGACGATAATGAGTTCTTCTCCTCACTCTCCGATCCCAAAGACGCATAGGAATTTGGGATGTAAGAATAGGAGGAGGAGACGGGCTTCACGGTTTTTACATGAAGAATCCAATGGGACAACTTTTGAGGTTGGCGCTGGTATTGGCTCTCCAACAAGTATGGTTCATTTTGATTCTACCAACCCTTCTTCTTCTAGTAAAAGTTCACAATCTCAAAATTTGAAAATCCGCAAGGTTAGGAATCACAGGAATTCTGGATTCAAGAGTAGGGATCAAAGTCCTCAGAGGATAAAGGATCCTCCGCCTTTCGACATATGTTCTTCAGTCCTCGAAAGAAATGATACAAGTATAAAAGATTGGATTTTGGCGGATGAAACAAACAGAGAAACTGTTGAAGTTAGTAATAAACACAAAGTTATAAGGCCTGGAATGGTGCTTCTTAAAGACTTCCTTACGCCTGATATACAGGTTGACATTGTGAAAACATGCCGAGAACTTGGTGTTAAGCCCACAGGATTTTACCAACCGGGGTATAGTGTTGGTTCAAAGCTTCATCTGCAAATGATGTGCCTTGGGCGAAACTGGGATCCTCAGACTAAATACAGGAAAAACACTGACATTGATAGTAAAGCACCAGAGATCCCTGTCACATTTAATGTCTTGGTAGAAAAGGCGATCCGAGAGGCACATGCTCTCATAGATAGAGAATCAGGAACAGAAGATGCGGAGAGGATACTTCCAGTGATGTCACCAGACATTTGCATAGTCAATTTCTACTCAGAAACTGGAAGACTTGGTCTCCATCAGGACCGTGACGAAAGCGAAGAGAGTATAGCAAGAGGGTTGCCGATAGTGTCCTTCTCCATAGGTGATTCTGCAGAGTTCTTGTACGGAGAGAAGAGAGACGTAGAAGAAGCTCAAGGAGTGATATTAGAATCAGGAGATGTGTTAATATTCGGGGGAGAATCGCGAATGATCTTCCATGGCGTCAAGTCAATCATACCAAACTCAGCTCCCATGTCTCTACTCAACGAGTCCAAGCTCCGAACAGGACGTCTCAATCTTACTTTTAGGCATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy_2

Protein Analysis

387

Amino Acids

43.53

Weight (kDa)

9.17

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy_2 PF13532 225 - 351 2e-16 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
AatII GACGTC 1 cut(s) 1138
AccII CGCG 1 cut(s) 1051
AciI CCGC 5 cut(s) 40, 310, 383, 449, 806
AclWI GGATC 8 cut(s) 109, 360, 371, 384, 662, 675, 715, 751
AcsI RAATTY 3 cut(s) 133, 298, 331
AcuI CTGAAG 1 cut(s) 387
AcyI GRCGYC 2 cut(s) 1068, 1135
AfaI GTAC 1 cut(s) 971
AgsI TTSAA 5 cut(s) 7, 304, 343, 476, 627
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 4 cut(s) 631, 998, 1094, 1123
AluI AGCT 4 cut(s) 631, 998, 1094, 1123
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 5 cut(s) 154, 884, 978, 1107, 1142
AlwI GGATC 8 cut(s) 109, 360, 371, 384, 662, 675, 715, 751
AlwNI CAGNNNCTG 1 cut(s) 866
AoxI GGCC 1 cut(s) 503
ApoI RAATTY 3 cut(s) 133, 298, 331
ArsI GACNNNNNNTTYG 2 cut(s) 1120, 1152
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 889
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 2 cut(s) 822, 962
AvaII GGWCC 1 cut(s) 889
BamHI GGATCC 2 cut(s) 376, 667
BbsI GAAGAC 1 cut(s) 877
Bbv12I GWGCWC 1 cut(s) 68
BccI CCATC 2 cut(s) 24, 891
BciT130I CCWGG 1 cut(s) 507
BciVI GTATCC 1 cut(s) 807
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 5 cut(s) 154, 884, 978, 1107, 1142
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 957
BfoI RGCGCY 1 cut(s) 219
BfuI GTATCC 1 cut(s) 807
Bme1390I CCNGG 2 cut(s) 507, 609
Bme18I GGWCC 1 cut(s) 889
BmgT120I GGNCC 1 cut(s) 889
BmiI GGNNCC 2 cut(s) 378, 669
BmrFI CCNGG 2 cut(s) 507, 609
BmrI ACTGGG 1 cut(s) 673
BmsI GCATC 1 cut(s) 793
BmuI ACTGGG 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 877
BplI GAGNNNNNCTC 2 cut(s) 85, 117
BpuEI CTTGAG 1 cut(s) 984
BpuMI CCSGG 1 cut(s) 609
BsaHI GRCGYC 2 cut(s) 1068, 1135
BsaI GGTCTC 1 cut(s) 884
BsaJI CCNNGG 3 cut(s) 608, 652, 1063
BsaXI ACNNNNNCTCC 2 cut(s) 864, 894
Bse1I ACTGG 3 cut(s) 668, 821, 871
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 3 cut(s) 608, 652, 1063
BseGI GGATG 2 cut(s) 146, 457
BseMII CTCAG 4 cut(s) 377, 686, 873, 1104
BseNI ACTGG 3 cut(s) 668, 821, 871
BseRI GAGGAG 3 cut(s) 93, 169, 172
Bsh1236I CGCG 1 cut(s) 1051
BshFI GGCC 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 608
BslFI GGGAC 1 cut(s) 211
BsmAI GTCTC 5 cut(s) 154, 884, 978, 1107, 1142
BsmBI CGTCTC 3 cut(s) 154, 978, 1142
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 1 cut(s) 505
Bso31I GGTCTC 1 cut(s) 884
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 8 cut(s) 48, 114, 352, 376, 667, 720, 756, 1056
Bsp19I CCATGG 1 cut(s) 1063
Bsp68I TCGCGA 1 cut(s) 1051
BspACI CCGC 5 cut(s) 40, 310, 383, 449, 806
BspANI GGCC 1 cut(s) 505
BspCNI CTCAG 4 cut(s) 376, 685, 872, 1103
BspFNI CGCG 1 cut(s) 1051
BspLI GGNNCC 2 cut(s) 378, 669
BspMAI CTGCAG 1 cut(s) 961
BspPI GGATC 8 cut(s) 109, 360, 371, 384, 662, 675, 715, 751
BspTNI GGTCTC 1 cut(s) 884
BsrI ACTGG 3 cut(s) 668, 821, 871
BssECI CCNNGG 3 cut(s) 608, 652, 1063
BssMI GATC 8 cut(s) 48, 114, 352, 376, 667, 720, 756, 1056
BssNI GRCGYC 2 cut(s) 1068, 1135
BssT1I CCWWGG 2 cut(s) 652, 1063
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 3 cut(s) 174, 472, 893
Bst6I CTCTTC 2 cut(s) 900, 974
BstACI GRCGYC 2 cut(s) 1068, 1135
BstDEI CTNAG 4 cut(s) 363, 672, 859, 1090
BstDSI CCRYGG 1 cut(s) 1063
BstF5I GGATG 2 cut(s) 146, 457
BstFNI CGCG 1 cut(s) 1051
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 8 cut(s) 51, 117, 355, 379, 670, 723, 759, 1059
BstMAI GTCTC 5 cut(s) 154, 884, 978, 1107, 1142
BstMBI GATC 8 cut(s) 48, 114, 352, 376, 667, 720, 756, 1056
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstNI CCWGG 1 cut(s) 507
BstNSI RCATGY 2 cut(s) 570, 773
BstSCI CCNGG 2 cut(s) 505, 607
BstSFI CTRYAG 1 cut(s) 957
BstUI CGCG 1 cut(s) 1051
BstV2I GAAGAC 1 cut(s) 877
BstX2I RGATCY 3 cut(s) 376, 667, 720
BstYI RGATCY 3 cut(s) 376, 667, 720
BsuI GTATCC 1 cut(s) 807
BsuRI GGCC 1 cut(s) 505
BtgI CCRYGG 1 cut(s) 1063
BtgZI GCGATG 1 cut(s) 2
BtsCI GGATG 2 cut(s) 146, 457
BtsIMutI CAGTG 2 cut(s) 693, 828
BtuMI TCGCGA 1 cut(s) 1051
CaiI CAGNNNCTG 1 cut(s) 866
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 889
CseI GACGC 2 cut(s) 133, 1057
Csp6I GTAC 1 cut(s) 970
CviAII CATG 5 cut(s) 182, 567, 770, 1064, 1099
CviJI RGCY 9 cut(s) 61, 167, 228, 505, 589, 631, 998, 1094, 1123
CviKI_1 RGCY 9 cut(s) 61, 167, 228, 505, 589, 631, 998, 1094, 1123
CviQI GTAC 1 cut(s) 970
DdeI CTNAG 4 cut(s) 363, 672, 859, 1090
DpnI GATC 8 cut(s) 50, 116, 354, 378, 669, 722, 758, 1058
DpnII GATC 8 cut(s) 48, 114, 352, 376, 667, 720, 756, 1056
Eam1104I CTCTTC 2 cut(s) 900, 974
EarI CTCTTC 2 cut(s) 900, 974
EciI GGCGGA 2 cut(s) 372, 464
Eco130I CCWWGG 2 cut(s) 652, 1063
Eco147I AGGCCT 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 884
Eco47I GGWCC 1 cut(s) 889
Eco57I CTGAAG 1 cut(s) 387
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 505
EcoT14I CCWWGG 2 cut(s) 652, 1063
ErhI CCWWGG 2 cut(s) 652, 1063
Esp3I CGTCTC 3 cut(s) 154, 978, 1142
FaeI CATG 5 cut(s) 185, 570, 773, 1067, 1102
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 211
FatI CATG 5 cut(s) 181, 566, 769, 1063, 1098
FauI CCCGC 1 cut(s) 47
FauNDI CATATG 1 cut(s) 395
FokI GGATG 2 cut(s) 153, 464
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 1 cut(s) 505
HapII CCGG 1 cut(s) 608
HgaI GACGC 2 cut(s) 133, 1057
HhaI GCGC 1 cut(s) 218
Hin1I GRCGYC 2 cut(s) 1068, 1135
Hin1II CATG 5 cut(s) 185, 570, 773, 1067, 1102
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 9 cut(s) 188, 254, 322, 339, 788, 953, 1016, 1046, 1115
HpaII CCGG 1 cut(s) 608
HphI GGTGA 2 cut(s) 822, 962
Hpy166II GTNNAC 2 cut(s) 287, 553
Hpy188I TCNGA 6 cut(s) 114, 366, 675, 761, 862, 1127
Hpy188III TCNNGA 6 cut(s) 336, 343, 792, 887, 1020, 1050
Hpy8I GTNNAC 2 cut(s) 287, 553
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 3 cut(s) 65, 276, 949
HpyCH4III ACNGT 3 cut(s) 174, 472, 893
HpyCH4IV ACGT 2 cut(s) 987, 1135
HpyCH4V TGCA 3 cut(s) 640, 843, 959
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpyF3I CTNAG 4 cut(s) 363, 672, 859, 1090
HpySE526I ACGT 2 cut(s) 987, 1135
Hsp92I GRCGYC 2 cut(s) 1068, 1135
Hsp92II CATG 5 cut(s) 185, 570, 773, 1067, 1102
HspAI GCGC 1 cut(s) 216
Kzo9I GATC 8 cut(s) 48, 114, 352, 376, 667, 720, 756, 1056
LmnI GCTCC 2 cut(s) 1099, 1128
LweI GCATC 1 cut(s) 793
MaeI CTAG 1 cut(s) 276
MaeII ACGT 2 cut(s) 987, 1135
MaeIII GTNAC 3 cut(s) 727, 828, 893
MalI GATC 8 cut(s) 50, 116, 354, 378, 669, 722, 758, 1058
MboI GATC 8 cut(s) 48, 114, 352, 376, 667, 720, 756, 1056
MflI RGATCY 3 cut(s) 376, 667, 720
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 4 cut(s) 133, 298, 331, 850
MlyI GAGTC 1 cut(s) 1124
MmeI TCCRAC 1 cut(s) 257
MseI TTAA 4 cut(s) 522, 585, 735, 1031
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 2 cut(s) 507, 609
MvaI CCWGG 1 cut(s) 507
MvnI CGCG 1 cut(s) 1051
MwoI GCNNNNNNNGC 1 cut(s) 637
NciI CCSGG 1 cut(s) 609
NcoI CCATGG 1 cut(s) 1063
NdeI CATATG 1 cut(s) 395
NdeII GATC 8 cut(s) 48, 114, 352, 376, 667, 720, 756, 1056
NlaIII CATG 5 cut(s) 185, 570, 773, 1067, 1102
NlaIV GGNNCC 2 cut(s) 378, 669
NmeAIII GCCGAG 1 cut(s) 596
NmuCI GTSAC 3 cut(s) 727, 828, 893
NruI TCGCGA 1 cut(s) 1051
NspI RCATGY 2 cut(s) 570, 773
PceI AGGCCT 1 cut(s) 505
PfeI GAWTC 8 cut(s) 188, 254, 322, 339, 788, 953, 1016, 1046
PflFI GACNNNGTC 1 cut(s) 876
PleI GAGTC 1 cut(s) 1123
PpsI GAGTC 1 cut(s) 1123
PsiI TTATAA 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 378, 669
PspPI GGNCC 1 cut(s) 889
PstI CTGCAG 1 cut(s) 961
PstNI CAGNNNCTG 1 cut(s) 866
PsuI RGATCY 3 cut(s) 376, 667, 720
PsyI GACNNNGTC 1 cut(s) 876
RruI TCGCGA 1 cut(s) 1051
RsaI GTAC 1 cut(s) 971
RsaNI GTAC 1 cut(s) 970
SaqAI TTAA 4 cut(s) 522, 585, 735, 1031
Sau3AI GATC 8 cut(s) 48, 114, 352, 376, 667, 720, 756, 1056
Sau96I GGNCC 1 cut(s) 889
SchI GAGTC 1 cut(s) 1124
ScrFI CCNGG 2 cut(s) 507, 609
SduI GDGCHC 1 cut(s) 68
SfaNI GCATC 1 cut(s) 793
SfcI CTRYAG 1 cut(s) 957
SinI GGWCC 1 cut(s) 889
SmlI CTYRAG 1 cut(s) 999
SmoI CTYRAG 1 cut(s) 999
Sse9I AATT 4 cut(s) 133, 298, 331, 850
SseBI AGGCCT 1 cut(s) 505
SsiI CCGC 5 cut(s) 40, 310, 383, 449, 806
SspI AATATT 1 cut(s) 1035
SspMI CTAG 1 cut(s) 276
StuI AGGCCT 1 cut(s) 505
StyD4I CCNGG 2 cut(s) 505, 607
StyI CCWWGG 2 cut(s) 652, 1063
TaaI ACNGT 3 cut(s) 174, 472, 893
TaiI ACGT 2 cut(s) 990, 1138
TaqI TCGA 2 cut(s) 390, 411
TasI AATT 4 cut(s) 133, 298, 331, 850
TfiI GAWTC 8 cut(s) 188, 254, 322, 339, 788, 953, 1016, 1046
Tru1I TTAA 4 cut(s) 522, 585, 735, 1031
Tru9I TTAA 4 cut(s) 522, 585, 735, 1031
TscAI CASTG 2 cut(s) 700, 828
TseFI GTSAC 3 cut(s) 727, 828, 893
Tsp45I GTSAC 3 cut(s) 727, 828, 893
TspDTI ATGAA 5 cut(s) 17, 198, 236, 468, 623
TspGWI ACGGA 2 cut(s) 60, 987
TspRI CASTG 2 cut(s) 700, 828
Tth111I GACNNNGTC 1 cut(s) 876
VpaK11BI GGWCC 1 cut(s) 889
XapI RAATTY 3 cut(s) 133, 298, 331
XceI RCATGY 2 cut(s) 570, 773
XspI CTAG 1 cut(s) 276
ZraI GACGTC 1 cut(s) 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.