Rh3BG111700
ERF Family

2OG-Fe(II) oxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007643
Physical Location & Seq
Reverse (-)
9129441 .. 9132547
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG111700.1

Sequence Viewer

Length: 1173 bp
ATGTGGTGGCTCTTGCACCGTACGACCCTCCTCTCCCCACCCCTTCTTCGTCGTTCATTCCCTCCCCGCCAAATTCGTCCACCGGAAAAAATGAGTTTCAGGAACGACGGGAACTCACCCGCCACTCCCGGTGGCAATTCCGTCATTTCCTTAAGCCCCGTATCAGCTGCTAATGTTGGAAACAGAGATTGCCAGATTTTAAAGGTTGGAAGTATTCCTATTCTGATTTACGATAGTTTTGGTAATGTAGTTAAGCGGCCAATTGGGTTTGCAGTTACATCAGGGTTTAGTGATGAGAAGCAATGTGCTTCACTAAGTGATGGTATTCGTTTCGATGAAATGAGATCGAAAGTGGAGGATGCTTGTGTGAGTTCAAATTCGGAGGGTGCAAGTGAAAGGGAACATGAGAGGTGGAGTCCAATGCCGGATTGGAAAAGCCAATTGCGCGAATGCTCTTTGCCTACGGAATTTGGGATGAAAAGGAAGCACCACAGTCGTGCAGAAAAGCGGCATTCTGTACCGAGAAATTTGAAGTATGCACCTGTTACCAAGAGTTCGGGTTTATCTAAGCGTTTGCATTGTTATGAACCGTTTGATATATGCTTGGATGGGAGAAATTCTGCTCTTGAAGCTTCTTTTCATGCAAGAATGATGGAAGCAGAGGACACGGTGGAATTTGCTAATCCAGAACGGATGGTGGAATCTAAAGATCCAGTAGTACTGAGGCCAGGAATGGTCTTATTGAAAAATTATGTCAGCCTCAGTCAACAGGTTGAAATTGTAAAGACATGTCGGGAGCTCGGTTTAGGTCCTGGGGGGTTTTATCAACCAGTTTTCCAGCATGGAAGAAAACTTCATCTGCAGATGATGTGCCTGGGCCAGAATTGGGATCCTGAGACTAGGATATATGAAGTTATACGACCAATAGATGGAACTCGGCCTCCTGGTATTCCTAATGAATTTAGTTTGTTGGTTGAAAGAGCAATTCAAGAGGCACATGCCCATCTCAAAGATAAAATCAGATGTAGCAGTGTAGAAAAAGTGCTACCTTCAATGACTCCAGACATATGCATCGCCAACTTTTATACAACTAGTGGGAGGCTTGGTCTTCATCAGGTATTTACCCGACTGAAATACACTCTACATACCCCCCAAACCTACTTACATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy_2

Protein Analysis

390

Amino Acids

44.1

Weight (kDa)

9.03

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy_2 PF13532 244 - 372 5.1e-15 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 929
AccII CGCG 1 cut(s) 447
AciI CCGC 4 cut(s) 67, 120, 256, 508
AclWI GGATC 3 cut(s) 704, 884, 897
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 7 cut(s) 72, 376, 467, 526, 616, 674, 959
AdeI CACNNNGTG 1 cut(s) 317
AfaI GTAC 3 cut(s) 22, 519, 720
AfiI CCNNNNNNNGG 2 cut(s) 886, 929
AflII CTTAAG 1 cut(s) 151
AflIII ACRYGT 2 cut(s) 788, 1165
AgsI TTSAA 8 cut(s) 375, 532, 629, 745, 776, 977, 989, 1053
AhlI ACTAGT 1 cut(s) 1091
AjnI CCWGG 4 cut(s) 727, 811, 873, 943
AleI CACNNNNGTG 1 cut(s) 495
AloI GAACNNNNNNTCC 2 cut(s) 925, 957
AluBI AGCT 3 cut(s) 167, 632, 799
AluI AGCT 3 cut(s) 167, 632, 799
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 1 cut(s) 890
AlwI GGATC 3 cut(s) 704, 884, 897
AoxI GGCC 4 cut(s) 257, 725, 877, 938
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 7 cut(s) 72, 376, 467, 526, 616, 674, 959
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 2 cut(s) 809, 877
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 108
AvaII GGWCC 1 cut(s) 809
BamHI GGATCC 1 cut(s) 889
BanII GRGCYC 1 cut(s) 801
BbsI GAAGAC 1 cut(s) 1100
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 1 cut(s) 154
BccI CCATC 6 cut(s) 314, 602, 646, 688, 923, 1011
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 4 cut(s) 729, 813, 875, 945
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 890
BcuI ACTAGT 1 cut(s) 1091
BfaI CTAG 2 cut(s) 900, 1092
BfmI CTRYAG 1 cut(s) 860
BfrI CTTAAG 1 cut(s) 151
BisI GCNGC 3 cut(s) 168, 257, 509
BlsI GCNGC 3 cut(s) 169, 258, 510
BmcAI AGTACT 1 cut(s) 720
Bme1390I CCNGG 5 cut(s) 129, 729, 813, 875, 945
Bme18I GGWCC 1 cut(s) 809
BmgT120I GGNCC 2 cut(s) 809, 877
BmiI GGNNCC 1 cut(s) 891
BmrFI CCNGG 5 cut(s) 129, 729, 813, 875, 945
BmsI GCATC 2 cut(s) 349, 1080
BpiI GAAGAC 1 cut(s) 1100
BpmI CTGGAG 1 cut(s) 1044
BpuMI CCSGG 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 812, 874
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 4 cut(s) 925, 955, 1090, 1120
Bsc4I CCNNNNNNNGG 2 cut(s) 886, 929
Bse1I ACTGG 2 cut(s) 713, 830
Bse3DI GCAATG 1 cut(s) 308
BseBI CCWGG 4 cut(s) 729, 813, 875, 945
BseDI CCNNGG 2 cut(s) 812, 874
BseGI GGATG 4 cut(s) 364, 480, 613, 699
BseLI CCNNNNNNNGG 2 cut(s) 886, 929
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 3 cut(s) 713, 775, 885
BseNI ACTGG 2 cut(s) 713, 830
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 4 cut(s) 259, 727, 879, 940
BsiHKAI GWGCWC 1 cut(s) 801
BsiSI CCGG 3 cut(s) 83, 129, 425
BsiWI CGTACG 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 886, 929
BsmAI GTCTC 1 cut(s) 890
BsmI GAATGC 2 cut(s) 455, 511
BsnI GGCC 4 cut(s) 259, 727, 879, 940
Bsp1286I GDGCHC 1 cut(s) 801
Bsp143I GATC 3 cut(s) 344, 709, 889
BspACI CCGC 4 cut(s) 67, 120, 256, 508
BspANI GGCC 4 cut(s) 259, 727, 879, 940
BspCNI CTCAG 3 cut(s) 714, 774, 886
BspFNI CGCG 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 891
BspMAI CTGCAG 1 cut(s) 864
BspPI GGATC 3 cut(s) 704, 884, 897
BspTI CTTAAG 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 308
BsrI ACTGG 2 cut(s) 713, 830
BssECI CCNNGG 2 cut(s) 812, 874
BssMI GATC 3 cut(s) 344, 709, 889
Bst2UI CCWGG 4 cut(s) 729, 813, 875, 945
Bst4CI ACNGT 4 cut(s) 20, 494, 591, 670
BstAFI CTTAAG 1 cut(s) 151
BstDEI CTNAG 5 cut(s) 314, 567, 722, 761, 894
BstF5I GGATG 4 cut(s) 364, 480, 613, 699
BstFNI CGCG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 3 cut(s) 347, 712, 892
BstMAI GTCTC 1 cut(s) 890
BstMBI GATC 3 cut(s) 344, 709, 889
BstMWI GCNNNNNNNGC 2 cut(s) 444, 629
BstNI CCWGG 4 cut(s) 729, 813, 875, 945
BstNSI RCATGY 3 cut(s) 792, 1001, 1169
BstSCI CCNGG 5 cut(s) 127, 727, 811, 873, 943
BstSFI CTRYAG 1 cut(s) 860
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 1100
BstX2I RGATCY 2 cut(s) 709, 889
BstYI RGATCY 2 cut(s) 709, 889
BsuRI GGCC 4 cut(s) 259, 727, 879, 940
BtgZI GCGATG 1 cut(s) 1057
BtsCI GGATG 4 cut(s) 364, 480, 613, 699
BtsI GCAGTG 1 cut(s) 1036
BtsIMutI CAGTG 1 cut(s) 1036
CfoI GCGC 1 cut(s) 447
Cfr13I GGNCC 2 cut(s) 809, 877
Csp6I GTAC 3 cut(s) 21, 518, 719
CviAII CATG 6 cut(s) 404, 641, 789, 842, 998, 1166
CviQI GTAC 3 cut(s) 21, 518, 719
DdeI CTNAG 5 cut(s) 314, 567, 722, 761, 894
DpnI GATC 3 cut(s) 346, 711, 891
DpnII GATC 3 cut(s) 344, 709, 889
DraI TTTAAA 1 cut(s) 201
DraIII CACNNNGTG 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 801
Eco47I GGWCC 1 cut(s) 809
Eco53kI GAGCTC 1 cut(s) 799
EcoICRI GAGCTC 1 cut(s) 799
EcoO109I RGGNCCY 1 cut(s) 809
EcoRII CCWGG 4 cut(s) 727, 811, 873, 943
EcoT22I ATGCAT 1 cut(s) 1073
EcoT38I GRGCYC 1 cut(s) 801
FaeI CATG 6 cut(s) 407, 644, 792, 845, 1001, 1169
FatI CATG 6 cut(s) 403, 640, 788, 841, 997, 1165
FauI CCCGC 2 cut(s) 74, 127
FauNDI CATATG 1 cut(s) 1067
Fnu4HI GCNGC 3 cut(s) 168, 257, 509
FokI GGATG 4 cut(s) 371, 487, 620, 706
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 3 cut(s) 168, 257, 509
FspBI CTAG 2 cut(s) 900, 1092
GlaI GCGC 1 cut(s) 446
GluI GCNGC 3 cut(s) 168, 257, 509
GsuI CTGGAG 1 cut(s) 1044
HaeIII GGCC 4 cut(s) 259, 727, 879, 940
HapII CCGG 3 cut(s) 83, 129, 425
HhaI GCGC 1 cut(s) 447
Hin1II CATG 6 cut(s) 407, 644, 792, 845, 1001, 1169
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HincII GTYRAC 1 cut(s) 767
HindII GTYRAC 1 cut(s) 767
HindIII AAGCTT 1 cut(s) 630
HinfI GANTC 3 cut(s) 415, 701, 1057
HpaII CCGG 3 cut(s) 83, 129, 425
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 2 cut(s) 80, 767
Hpy188I TCNGA 3 cut(s) 225, 382, 1022
Hpy188III TCNNGA 7 cut(s) 100, 626, 686, 794, 893, 989, 1061
Hpy8I GTNNAC 2 cut(s) 80, 767
Hpy99I CGWCG 2 cut(s) 54, 110
HpyAV CCTTC 2 cut(s) 53, 1059
HpyCH4III ACNGT 4 cut(s) 20, 494, 591, 670
HpyCH4V TGCA 9 cut(s) 16, 272, 389, 500, 539, 577, 644, 862, 1071
HpyF10VI GCNNNNNNNGC 2 cut(s) 444, 629
HpyF3I CTNAG 5 cut(s) 314, 567, 722, 761, 894
Hsp92II CATG 6 cut(s) 407, 644, 792, 845, 1001, 1169
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 344, 709, 889
LmnI GCTCC 1 cut(s) 796
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 2 cut(s) 349, 1080
MaeI CTAG 2 cut(s) 900, 1092
MaeIII GTNAC 2 cut(s) 274, 544
MalI GATC 3 cut(s) 346, 711, 891
MboI GATC 3 cut(s) 344, 709, 889
MboII GAAGA 3 cut(s) 38, 858, 1100
MfeI CAATTG 2 cut(s) 261, 440
MflI RGATCY 2 cut(s) 709, 889
MhlI GDGCHC 1 cut(s) 801
MlyI GAGTC 2 cut(s) 424, 1051
MmeI TCCRAC 2 cut(s) 157, 187
Mph1103I ATGCAT 1 cut(s) 1073
MseI TTAA 3 cut(s) 152, 200, 252
MslI CAYNNNNRTG 2 cut(s) 495, 582
MspA1I CMGCKG 1 cut(s) 167
MspCI CTTAAG 1 cut(s) 151
MspI CCGG 3 cut(s) 83, 129, 425
MspR9I CCNGG 5 cut(s) 129, 729, 813, 875, 945
MunI CAATTG 2 cut(s) 261, 440
Mva1269I GAATGC 2 cut(s) 455, 511
MvaI CCWGG 4 cut(s) 729, 813, 875, 945
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 444, 629
NciI CCSGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 1067
NdeII GATC 3 cut(s) 344, 709, 889
NlaIII CATG 6 cut(s) 407, 644, 792, 845, 1001, 1169
NlaIV GGNNCC 1 cut(s) 891
NmeAIII GCCGAG 1 cut(s) 916
NsiI ATGCAT 1 cut(s) 1073
NspI RCATGY 3 cut(s) 792, 1001, 1169
OliI CACNNNNGTG 1 cut(s) 495
PciI ACATGT 2 cut(s) 788, 1165
PctI GAATGC 2 cut(s) 455, 511
PfeI GAWTC 1 cut(s) 701
Pfl23II CGTACG 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 929
PkrI GCNGC 3 cut(s) 169, 258, 510
PleI GAGTC 2 cut(s) 423, 1051
PpsI GAGTC 2 cut(s) 423, 1051
PpuMI RGGWCCY 1 cut(s) 809
PscI ACATGT 2 cut(s) 788, 1165
Psp124BI GAGCTC 1 cut(s) 801
Psp5II RGGWCCY 1 cut(s) 809
Psp6I CCWGG 4 cut(s) 727, 811, 873, 943
PspGI CCWGG 4 cut(s) 727, 811, 873, 943
PspLI CGTACG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 891
PspPI GGNCC 2 cut(s) 809, 877
PspPPI RGGWCCY 1 cut(s) 809
PstI CTGCAG 1 cut(s) 864
PsuI RGATCY 2 cut(s) 709, 889
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 3 cut(s) 22, 519, 720
RsaNI GTAC 3 cut(s) 21, 518, 719
RseI CAYNNNNRTG 2 cut(s) 495, 582
SacI GAGCTC 1 cut(s) 801
SaqAI TTAA 3 cut(s) 152, 200, 252
SatI GCNGC 3 cut(s) 168, 257, 509
Sau3AI GATC 3 cut(s) 344, 709, 889
Sau96I GGNCC 2 cut(s) 809, 877
ScaI AGTACT 1 cut(s) 720
SchI GAGTC 2 cut(s) 424, 1051
ScrFI CCNGG 5 cut(s) 129, 729, 813, 875, 945
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 2 cut(s) 349, 1080
SfcI CTRYAG 1 cut(s) 860
SinI GGWCC 1 cut(s) 809
SmiMI CAYNNNNRTG 2 cut(s) 495, 582
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SpeI ACTAGT 1 cut(s) 1091
SsiI CCGC 4 cut(s) 67, 120, 256, 508
SspMI CTAG 2 cut(s) 900, 1092
SstI GAGCTC 1 cut(s) 801
StyD4I CCNGG 5 cut(s) 127, 727, 811, 873, 943
TaaI ACNGT 4 cut(s) 20, 494, 591, 670
TaqI TCGA 2 cut(s) 333, 347
TatI WGTACW 1 cut(s) 718
TauI GCSGC 2 cut(s) 259, 511
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 3 cut(s) 152, 200, 252
Tru9I TTAA 3 cut(s) 152, 200, 252
TscAI CASTG 1 cut(s) 1036
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 9 cut(s) 45, 351, 491, 600, 629, 845, 924, 972, 1100
TspGWI ACGGA 3 cut(s) 130, 479, 706
TspRI CASTG 1 cut(s) 1036
Van91I CCANNNNNTGG 1 cut(s) 929
Vha464I CTTAAG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 7 cut(s) 72, 376, 467, 526, 616, 674, 959
XceI RCATGY 3 cut(s) 792, 1001, 1169
XcmI CCANNNNNNNNNTGG 1 cut(s) 426
XspI CTAG 2 cut(s) 900, 1092
ZrmI AGTACT 1 cut(s) 720
Zsp2I ATGCAT 1 cut(s) 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.