FvH4_6g10460
ERF Family

2OG-Fe(II) oxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007643
Physical Location & Seq
Reverse (-)
6266770 .. 6269304
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10460.t1

Sequence Viewer

Length: 1440 bp
ATGCGGTGGCTCTTTCACCGTACGACTCCTCTCTCCTCAGCTTTACTTCGTCGTTCATTCTTGGAGCCTCTCTCTGCTCCCCGCCATATTTCTCCACCGGAAAAAATGATTTTCAAGAACGACAACAACAACTCTCCCGCGACTCCCGTTTTCCGCGCCGTCTCAGCTGCTAGAGTTGGAAACATAAATTGTCTGATATTACAGGTTGGAAGTGTTCCTATTCTGAGTTTCCATCGTCAGACATTAATGGTCGGAAGCATTCCTATTCTAAGTTACTATAGTTTAGGTAATATAGTTAAGCCACTCGGGTTTGCAGTCACATCTAGTGATAAGAAGCAGTGTTTTTCATCAAGTGATGATATTCGTTTCGATGAAATGAGGTCTCAAGTTGATTCAGTGTCAGAGGATACTTGTGTGAGTTCAAATTCGAAGAGTGTAAGTGAAATGGAACATGAGGGAGGGAGTACAATGCCGGATATGAAACGCCAATTGTGTGAGTTGTCTTTGCCTACAGAATTTGGGATGAAAAGGAAGCACCGTCCTCATGCAGAAAAGCGGCATTCTGTACCAAAAAATATGAAATATGTACCTGTTACCAGAGATCCAGGTGTATCTAAGCGTTTGTGTCATTATGAACCATTTGATATATGCTTGGGTGGGAGGAATTCTGCTCTTCAAGCTTCTTTTCGTGAAAGAATGATGGAGGCAGAGGACATGCTAGAATTTGCAAATCCAGAAAAAATTGTGGAATGTACTGATCCAATAGTACTGAGGCCGGGGATGGTCTTATTGAAAAATTATGTGAGCCTCAGTGAACAGGTTGATATTGTAAAGACATGTCGGGAGCTTGGTTTAGGCCCTGGGGGGTTTTATCAACCTGTTTTCCAGAATGGAGCAAAACTTTGTCTGCAGATGATGTGCCTGGGCCTGAATTGGGATCCTGAGACTAGGAAATATGAAGATATACGACCACTAGATGGCACTCGGTCTCCTGGTATCCCCAATGAATTTAGTTTGTTGGTTGAGAGAGCAATTCAAGAGGCACATGCCCATCTCAAAGATAAAATCAGATGTCGCATTGTAGAAAAAGTACTCCCTTCAATGACTCCAAACATATGCATCACCAACTTTTATAATACTAGGGGGAGGCTTGGTCTTCATCAGGACCGTGATGAAAGCAAAGAGTCTCTCCGAGAAGGATTACCTGTCGTCTCAATTTCTATAGGTGATTCTGCAGATTTTCTCTATGGGGATCAGAGAGATATTGAAAAGGCAGAGAGTATTATTTTGGAATCAGGAGATGTCTTAATATTCGGTGGTCATTCAAGACATATATTTCATGGTGTAACATCCATCGTACCAAACTCAGCTCCAAAAAAATTGCTGGAAGAAACTATGCTTCGTCCTGGCCGTCTGAATCTTACCTTCAGACAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy_2

Protein Analysis

480

Amino Acids

53.92

Weight (kDa)

8.38

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy_2 PF13532 260 - 477 1.2e-45 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1134
AccB7I CCANNNNNTGG 1 cut(s) 977
AccII CGCG 2 cut(s) 140, 156
AciI CCGC 5 cut(s) 4, 82, 138, 154, 556
AclWI GGATC 5 cut(s) 596, 752, 932, 945, 1260
AcoI YGGCCR 1 cut(s) 1408
AcsI RAATTY 5 cut(s) 424, 515, 664, 722, 1007
AcuI CTGAAG 1 cut(s) 1411
AfaI GTAC 8 cut(s) 22, 466, 567, 588, 754, 768, 1092, 1359
AfiI CCNNNNNNNGG 2 cut(s) 934, 977
AflIII ACRYGT 1 cut(s) 836
AgsI TTSAA 8 cut(s) 115, 423, 677, 793, 1037, 1101, 1268, 1326
AjnI CCWGG 5 cut(s) 604, 859, 921, 991, 1405
AluBI AGCT 5 cut(s) 41, 167, 680, 847, 1370
AluI AGCT 5 cut(s) 41, 167, 680, 847, 1370
Alw26I GTCTC 6 cut(s) 166, 387, 938, 993, 1191, 1216
AlwI GGATC 5 cut(s) 596, 752, 932, 945, 1260
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 4 cut(s) 773, 856, 925, 1408
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 5 cut(s) 424, 515, 664, 722, 1007
AseI ATTAAT 1 cut(s) 245
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 3 cut(s) 857, 925, 1165
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 3 cut(s) 8, 1114, 1238
AsuII TTCGAA 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 1 cut(s) 1165
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BamHI GGATCC 1 cut(s) 937
BbsI GAAGAC 1 cut(s) 1148
BbvCI CCTCAGC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 154
BccI CCATC 6 cut(s) 240, 694, 775, 971, 1059, 1361
BceAI ACGGC 2 cut(s) 143, 1395
BciT130I CCWGG 5 cut(s) 606, 861, 923, 993, 1407
BciVI GTATCC 2 cut(s) 400, 1007
BcnI CCSGG 1 cut(s) 777
BcoDI GTCTC 6 cut(s) 166, 387, 938, 993, 1191, 1216
BfaI CTAG 6 cut(s) 171, 324, 719, 948, 974, 1140
BfmI CTRYAG 5 cut(s) 277, 510, 908, 1221, 1233
BfuI GTATCC 2 cut(s) 400, 1007
BisI GCNGC 2 cut(s) 168, 557
BlsI GCNGC 2 cut(s) 169, 558
BmcAI AGTACT 2 cut(s) 768, 1092
Bme1390I CCNGG 6 cut(s) 606, 777, 861, 923, 993, 1407
Bme18I GGWCC 1 cut(s) 1165
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 3 cut(s) 857, 925, 1165
BmiI GGNNCC 2 cut(s) 66, 939
BmrFI CCNGG 6 cut(s) 606, 777, 861, 923, 993, 1407
BmsI GCATC 1 cut(s) 1128
BpiI GAAGAC 1 cut(s) 1148
BplI GAGNNNNNCTC 2 cut(s) 56, 88
Bpu10I CCTNAGC 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 777
BsaI GGTCTC 2 cut(s) 387, 993
BsaJI CCNNGG 4 cut(s) 776, 859, 860, 922
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 973, 1003, 1138, 1168
Bsc4I CCNNNNNNNGG 2 cut(s) 934, 977
BseBI CCWGG 5 cut(s) 606, 861, 923, 993, 1407
BseDI CCNNGG 4 cut(s) 776, 859, 860, 922
BseGI GGATG 3 cut(s) 528, 786, 1349
BseLI CCNNNNNNNGG 2 cut(s) 934, 977
BseMII CTCAG 7 cut(s) 51, 177, 215, 761, 823, 933, 1380
BseRI GAGGAG 2 cut(s) 18, 25
BseXI GCAGC 1 cut(s) 154
Bsh1236I CGCG 2 cut(s) 140, 156
BshFI GGCC 4 cut(s) 775, 858, 927, 1410
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 3 cut(s) 98, 473, 776
BsiWI CGTACG 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 934, 977
BsmAI GTCTC 6 cut(s) 166, 387, 938, 993, 1191, 1216
BsmBI CGTCTC 2 cut(s) 166, 1216
BsmI GAATGC 2 cut(s) 258, 559
BsnI GGCC 4 cut(s) 775, 858, 927, 1410
Bso31I GGTCTC 2 cut(s) 387, 993
BsoBI CYCGRG 1 cut(s) 305
Bsp119I TTCGAA 1 cut(s) 428
Bsp143I GATC 4 cut(s) 601, 757, 937, 1252
BspACI CCGC 5 cut(s) 4, 82, 138, 154, 556
BspANI GGCC 4 cut(s) 775, 858, 927, 1410
BspCNI CTCAG 7 cut(s) 50, 176, 216, 762, 822, 934, 1379
BspFNI CGCG 2 cut(s) 140, 156
BspLI GGNNCC 2 cut(s) 66, 939
BspMAI CTGCAG 2 cut(s) 912, 1237
BspPI GGATC 5 cut(s) 596, 752, 932, 945, 1260
BspQI GCTCTTC 1 cut(s) 678
BspT104I TTCGAA 1 cut(s) 428
BspTNI GGTCTC 2 cut(s) 387, 993
BssECI CCNNGG 4 cut(s) 776, 859, 860, 922
BssMI GATC 4 cut(s) 601, 757, 937, 1252
Bst2UI CCWGG 5 cut(s) 606, 861, 923, 993, 1407
Bst4CI ACNGT 4 cut(s) 20, 539, 1169, 1434
Bst6I CTCTTC 2 cut(s) 425, 678
BstBI TTCGAA 1 cut(s) 428
BstDEI CTNAG 9 cut(s) 37, 163, 224, 269, 615, 770, 809, 942, 1366
BstF5I GGATG 3 cut(s) 528, 786, 1349
BstFNI CGCG 2 cut(s) 140, 156
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 4 cut(s) 604, 760, 940, 1255
BstMAI GTCTC 6 cut(s) 166, 387, 938, 993, 1191, 1216
BstMBI GATC 4 cut(s) 601, 757, 937, 1252
BstMWI GCNNNNNNNGC 2 cut(s) 164, 677
BstNI CCWGG 5 cut(s) 606, 861, 923, 993, 1407
BstNSI RCATGY 3 cut(s) 718, 840, 1049
BstSCI CCNGG 6 cut(s) 604, 775, 859, 921, 991, 1405
BstSFI CTRYAG 5 cut(s) 277, 510, 908, 1221, 1233
BstUI CGCG 2 cut(s) 140, 156
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 1148
BstX2I RGATCY 2 cut(s) 601, 937
BstYI RGATCY 2 cut(s) 601, 937
BsuI GTATCC 2 cut(s) 400, 1007
BsuRI GGCC 4 cut(s) 775, 858, 927, 1410
BtsCI GGATG 3 cut(s) 528, 786, 1349
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 3 cut(s) 344, 402, 817
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 857, 925, 1165
Csp6I GTAC 8 cut(s) 21, 465, 566, 587, 753, 767, 1091, 1358
CviAII CATG 6 cut(s) 452, 545, 715, 837, 1046, 1340
CviQI GTAC 8 cut(s) 21, 465, 566, 587, 753, 767, 1091, 1358
DdeI CTNAG 9 cut(s) 37, 163, 224, 269, 615, 770, 809, 942, 1366
DpnI GATC 4 cut(s) 603, 759, 939, 1254
DpnII GATC 4 cut(s) 601, 757, 937, 1252
EaeI YGGCCR 1 cut(s) 1408
Eam1104I CTCTTC 2 cut(s) 425, 678
EarI CTCTTC 2 cut(s) 425, 678
Eco31I GGTCTC 2 cut(s) 387, 993
Eco47I GGWCC 1 cut(s) 1165
Eco57I CTGAAG 1 cut(s) 1411
Eco88I CYCGRG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 857
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 5 cut(s) 604, 859, 921, 991, 1405
EcoT22I ATGCAT 1 cut(s) 1121
Esp3I CGTCTC 2 cut(s) 166, 1216
FaeI CATG 6 cut(s) 455, 548, 718, 840, 1049, 1343
FatI CATG 6 cut(s) 451, 544, 714, 836, 1045, 1339
FauI CCCGC 2 cut(s) 89, 145
FauNDI CATATG 1 cut(s) 1115
Fnu4HI GCNGC 2 cut(s) 168, 557
FokI GGATG 3 cut(s) 535, 793, 1336
Fsp4HI GCNGC 2 cut(s) 168, 557
FspBI CTAG 6 cut(s) 171, 324, 719, 948, 974, 1140
GlaI GCGC 1 cut(s) 157
GluI GCNGC 2 cut(s) 168, 557
HaeIII GGCC 4 cut(s) 775, 858, 927, 1410
HapII CCGG 3 cut(s) 98, 473, 776
HhaI GCGC 1 cut(s) 158
Hin1II CATG 6 cut(s) 455, 548, 718, 840, 1049, 1343
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 678
HinfI GANTC 8 cut(s) 25, 142, 392, 1105, 1184, 1229, 1292, 1417
HpaII CCGG 3 cut(s) 98, 473, 776
HphI GGTGA 3 cut(s) 8, 1114, 1238
Hpy166II GTNNAC 1 cut(s) 815
Hpy8I GTNNAC 1 cut(s) 815
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 3 cut(s) 1107, 1190, 1435
HpyCH4III ACNGT 4 cut(s) 20, 539, 1169, 1434
HpyCH4V TGCA 6 cut(s) 314, 548, 728, 910, 1119, 1235
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 677
HpyF3I CTNAG 9 cut(s) 37, 163, 224, 269, 615, 770, 809, 942, 1366
Hsp92II CATG 6 cut(s) 455, 548, 718, 840, 1049, 1343
HspAI GCGC 1 cut(s) 156
Kzo9I GATC 4 cut(s) 601, 757, 937, 1252
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 5 cut(s) 64, 82, 844, 893, 1375
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 1128
MaeI CTAG 6 cut(s) 171, 324, 719, 948, 974, 1140
MaeIII GTNAC 4 cut(s) 272, 316, 592, 1345
MalI GATC 4 cut(s) 603, 759, 939, 1254
MboI GATC 4 cut(s) 601, 757, 937, 1252
MboII GAAGA 5 cut(s) 442, 665, 971, 1148, 1400
MfeI CAATTG 1 cut(s) 488
MflI RGATCY 2 cut(s) 601, 937
MlyI GAGTC 4 cut(s) 19, 136, 1099, 1193
MmeI TCCRAC 3 cut(s) 157, 187, 232
Mph1103I ATGCAT 1 cut(s) 1121
MseI TTAA 3 cut(s) 245, 297, 1307
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 3 cut(s) 98, 473, 776
MspR9I CCNGG 6 cut(s) 606, 777, 861, 923, 993, 1407
MunI CAATTG 1 cut(s) 488
Mva1269I GAATGC 2 cut(s) 258, 559
MvaI CCWGG 5 cut(s) 606, 861, 923, 993, 1407
MvnI CGCG 2 cut(s) 140, 156
MwoI GCNNNNNNNGC 2 cut(s) 164, 677
NciI CCSGG 1 cut(s) 777
NdeI CATATG 1 cut(s) 1115
NdeII GATC 4 cut(s) 601, 757, 937, 1252
NlaIII CATG 6 cut(s) 455, 548, 718, 840, 1049, 1343
NlaIV GGNNCC 2 cut(s) 66, 939
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 1121
NspI RCATGY 3 cut(s) 718, 840, 1049
NspV TTCGAA 1 cut(s) 428
PasI CCCWGGG 1 cut(s) 860
PciI ACATGT 1 cut(s) 836
PciSI GCTCTTC 1 cut(s) 678
PcsI WCGNNNNNNNCGW 1 cut(s) 1408
PctI GAATGC 2 cut(s) 258, 559
PfeI GAWTC 4 cut(s) 392, 1229, 1292, 1417
Pfl23II CGTACG 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 977
PkrI GCNGC 2 cut(s) 169, 558
PleI GAGTC 4 cut(s) 19, 136, 1099, 1192
PpsI GAGTC 4 cut(s) 19, 136, 1099, 1192
PscI ACATGT 1 cut(s) 836
PshBI ATTAAT 1 cut(s) 245
PsiI TTATAA 1 cut(s) 1134
Psp6I CCWGG 5 cut(s) 604, 859, 921, 991, 1405
PspGI CCWGG 5 cut(s) 604, 859, 921, 991, 1405
PspLI CGTACG 1 cut(s) 20
PspN4I GGNNCC 2 cut(s) 66, 939
PspPI GGNCC 3 cut(s) 857, 925, 1165
PstI CTGCAG 2 cut(s) 912, 1237
PsuI RGATCY 2 cut(s) 601, 937
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 8 cut(s) 22, 466, 567, 588, 754, 768, 1092, 1359
RsaNI GTAC 8 cut(s) 21, 465, 566, 587, 753, 767, 1091, 1358
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 3 cut(s) 245, 297, 1307
SatI GCNGC 2 cut(s) 168, 557
Sau3AI GATC 4 cut(s) 601, 757, 937, 1252
Sau96I GGNCC 3 cut(s) 857, 925, 1165
ScaI AGTACT 2 cut(s) 768, 1092
SchI GAGTC 4 cut(s) 19, 136, 1099, 1193
ScrFI CCNGG 6 cut(s) 606, 777, 861, 923, 993, 1407
SfaNI GCATC 1 cut(s) 1128
SfcI CTRYAG 5 cut(s) 277, 510, 908, 1221, 1233
SfuI TTCGAA 1 cut(s) 428
SinI GGWCC 1 cut(s) 1165
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
SsiI CCGC 5 cut(s) 4, 82, 138, 154, 556
SspI AATATT 1 cut(s) 1311
SspMI CTAG 6 cut(s) 171, 324, 719, 948, 974, 1140
StyD4I CCNGG 6 cut(s) 604, 775, 859, 921, 991, 1405
TaaI ACNGT 4 cut(s) 20, 539, 1169, 1434
TaqI TCGA 2 cut(s) 369, 428
TaqII GACCGA 1 cut(s) 975
TatI WGTACW 4 cut(s) 464, 752, 766, 1090
TauI GCSGC 1 cut(s) 559
TfiI GAWTC 4 cut(s) 392, 1229, 1292, 1417
Tru1I TTAA 3 cut(s) 245, 297, 1307
Tru9I TTAA 3 cut(s) 245, 297, 1307
TscAI CASTG 3 cut(s) 344, 402, 817
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 316
TspRI CASTG 3 cut(s) 344, 402, 817
Van91I CCANNNNNTGG 1 cut(s) 977
VpaK11BI GGWCC 1 cut(s) 1165
VspI ATTAAT 1 cut(s) 245
XapI RAATTY 5 cut(s) 424, 515, 664, 722, 1007
XceI RCATGY 3 cut(s) 718, 840, 1049
XspI CTAG 6 cut(s) 171, 324, 719, 948, 974, 1140
ZrmI AGTACT 2 cut(s) 768, 1092
Zsp2I ATGCAT 1 cut(s) 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.