Rh3AG107700
ERF Family

2OG-Fe(II) oxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0007643
Physical Location & Seq
Reverse (-)
9101304 .. 9104379
3076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG107700.1

Sequence Viewer

Length: 1203 bp
ATGTGGTGGCTCTTGCGCCGCACGACCCTTCTCTCCCCACCCCTTCTTCGTCGTTCATTCCCTCCCCGCCAAATTCGTCCACCGGAAAAAATGAGTTTCAGGAACGAAGGGAACTCACCCGCCACTCCCGGTGACAATTCCGTCATTTCCTTAAGCCCCGTATCAGCGGCTAATGTTGGAAACAGAGATTGTCAGATTTTAAAGGTTGGAAGCATTCCTATTCTGATTTGCGATAGTTCTGGTAATGTAGTTAAGCGGCCAATTGGGTTTGCAGTTACATCAGGGTTTAGTGAGAAGAAGCAATGTTCTTCACTAAGTGATGGTACTCGTTCCGATGAAATGAGATCGAAAGTGGGGTTAGTGTCGGGGGATAATGTGGAGGATGCTTGTGTGAGATCAAATTCGGAGAGTGTAAGTGAAAGGGAACATGAGAGGTGGAGTCCAATGCCGGATTGGAAAAGCCAATTGCGCGAATGCTCTTTGCCTACGGAATTTGGGATGAAAAGGAAGCACCACAGTCGTGCAGAAAAGCGGCGTTCTGTACCGAGAAATTTGAAGTATGCACCTGTTACCAAGAGTTCGGGTTTATCTAAGCGTTTGCATTGTTATGAACCGTTTGATATATGCTTGGATGGGAGAAATTCTGCTCTTGAAGCTTCTTTTCATGCAAGAATGATGGAAGCAGAGGACACGGTGGAATTTGCTAATCCAGAACGGATGGTGGAATCTAAAGATCTAGTAGTACTGAGGCCAGGAATGGTCTTATTGAAAAATTATGTCAGCCTCAGTGAACAGGTTGAAATTGTAAAGACATGTCGGGAGCTCGGTTTAGCTCCTGGGGGGTTTTATCAACCAGTTTTCCAGCATGGAAGAAAACTTCATCTGCAGATGATGTGCCTGGGCCTGAATTGGGATCCTGAGAGTAGGATATATGAAGATATACGACCAATAGATGGCACTCGGCCTCCTGGTATTCCTAATGAATTTAGTTTGTTGGTTGAAAGAGCAATTCAAGAGGCACATGCCCATCTCAAAGATAAAATCAGATGTAGCAGTGTAGAAAAAGTGCTACCTTCAATGACTCCAGACATATGCATCGCCAACTTTTATACAACTAGTGGGAGGCTTGGTCTTCATCAGGTATTTACCCTACTGAAATACACTCTACATACCCCCAAACCTACTTACATGTTTAATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy_2

Protein Analysis

400

Amino Acids

45.16

Weight (kDa)

8.98

Isoelectric Point (pI)

57.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy_2 PF13532 252 - 380 1.4e-15 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 953
AccII CGCG 1 cut(s) 471
AciI CCGC 6 cut(s) 19, 67, 120, 167, 256, 532
AclWI GGATC 2 cut(s) 908, 921
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 7 cut(s) 72, 400, 491, 550, 640, 698, 983
AdeI CACNNNGTG 1 cut(s) 317
AfaI GTAC 3 cut(s) 325, 543, 744
AfiI CCNNNNNNNGG 2 cut(s) 910, 953
AflII CTTAAG 1 cut(s) 151
AflIII ACRYGT 2 cut(s) 812, 1188
AgsI TTSAA 7 cut(s) 556, 653, 769, 800, 1001, 1013, 1077
AhlI ACTAGT 1 cut(s) 1115
AjnI CCWGG 4 cut(s) 751, 835, 897, 967
AleI CACNNNNGTG 1 cut(s) 519
AluBI AGCT 3 cut(s) 656, 823, 833
AluI AGCT 3 cut(s) 656, 823, 833
Alw21I GWGCWC 1 cut(s) 825
AlwI GGATC 2 cut(s) 908, 921
AoxI GGCC 4 cut(s) 257, 749, 901, 962
ApoI RAATTY 7 cut(s) 72, 400, 491, 550, 640, 698, 983
AspLEI GCGC 2 cut(s) 18, 471
AspS9I GGNCC 1 cut(s) 901
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 108, 143
BamHI GGATCC 1 cut(s) 913
BanII GRGCYC 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 1124
Bbv12I GWGCWC 1 cut(s) 825
BccI CCATC 6 cut(s) 314, 626, 670, 712, 947, 1035
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BciT130I CCWGG 4 cut(s) 753, 837, 899, 969
BcnI CCSGG 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 1115
BfaI CTAG 2 cut(s) 737, 1116
BfmI CTRYAG 1 cut(s) 884
BfrI CTTAAG 1 cut(s) 151
BglII AGATCT 1 cut(s) 733
BisI GCNGC 4 cut(s) 19, 168, 257, 533
BlsI GCNGC 4 cut(s) 20, 169, 258, 534
BmcAI AGTACT 1 cut(s) 744
Bme1390I CCNGG 5 cut(s) 129, 753, 837, 899, 969
BmgT120I GGNCC 1 cut(s) 901
BmiI GGNNCC 1 cut(s) 915
BmrFI CCNGG 5 cut(s) 129, 753, 837, 899, 969
BmsI GCATC 2 cut(s) 373, 1104
BpiI GAAGAC 1 cut(s) 1124
BpmI CTGGAG 1 cut(s) 1068
BpuMI CCSGG 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 836, 898
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 4 cut(s) 949, 979, 1114, 1144
Bsc4I CCNNNNNNNGG 2 cut(s) 910, 953
Bse1I ACTGG 1 cut(s) 854
Bse3DI GCAATG 1 cut(s) 308
BseBI CCWGG 4 cut(s) 753, 837, 899, 969
BseDI CCNNGG 2 cut(s) 836, 898
BseGI GGATG 4 cut(s) 388, 504, 637, 723
BseLI CCNNNNNNNGG 2 cut(s) 910, 953
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 3 cut(s) 737, 799, 909
BseNI ACTGG 1 cut(s) 854
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 4 cut(s) 259, 751, 903, 964
BsiHKAI GWGCWC 1 cut(s) 825
BsiSI CCGG 3 cut(s) 83, 129, 449
BslI CCNNNNNNNGG 2 cut(s) 910, 953
BsmI GAATGC 2 cut(s) 213, 479
BsnI GGCC 4 cut(s) 259, 751, 903, 964
Bsp1286I GDGCHC 1 cut(s) 825
Bsp143I GATC 4 cut(s) 344, 395, 733, 913
BspACI CCGC 6 cut(s) 19, 67, 120, 167, 256, 532
BspANI GGCC 4 cut(s) 259, 751, 903, 964
BspCNI CTCAG 3 cut(s) 738, 798, 910
BspFNI CGCG 1 cut(s) 471
BspLI GGNNCC 1 cut(s) 915
BspMAI CTGCAG 1 cut(s) 888
BspPI GGATC 2 cut(s) 908, 921
BspTI CTTAAG 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 308
BsrI ACTGG 1 cut(s) 854
BssECI CCNNGG 2 cut(s) 836, 898
BssMI GATC 4 cut(s) 344, 395, 733, 913
Bst2UI CCWGG 4 cut(s) 753, 837, 899, 969
Bst4CI ACNGT 3 cut(s) 518, 615, 694
BstAFI CTTAAG 1 cut(s) 151
BstDEI CTNAG 5 cut(s) 314, 591, 746, 785, 918
BstF5I GGATG 4 cut(s) 388, 504, 637, 723
BstFNI CGCG 1 cut(s) 471
BstHHI GCGC 2 cut(s) 18, 471
BstKTI GATC 4 cut(s) 347, 398, 736, 916
BstMBI GATC 4 cut(s) 344, 395, 733, 913
BstMWI GCNNNNNNNGC 2 cut(s) 468, 653
BstNI CCWGG 4 cut(s) 753, 837, 899, 969
BstNSI RCATGY 3 cut(s) 816, 1025, 1192
BstSCI CCNGG 5 cut(s) 127, 751, 835, 897, 967
BstSFI CTRYAG 1 cut(s) 884
BstUI CGCG 1 cut(s) 471
BstV2I GAAGAC 1 cut(s) 1124
BstX2I RGATCY 2 cut(s) 733, 913
BstYI RGATCY 2 cut(s) 733, 913
BsuRI GGCC 4 cut(s) 259, 751, 903, 964
BtgZI GCGATG 1 cut(s) 1081
BtsCI GGATG 4 cut(s) 388, 504, 637, 723
BtsI GCAGTG 1 cut(s) 1060
BtsIMutI CAGTG 2 cut(s) 793, 1060
CfoI GCGC 2 cut(s) 18, 471
Cfr13I GGNCC 1 cut(s) 901
Csp6I GTAC 3 cut(s) 324, 542, 743
CviAII CATG 6 cut(s) 428, 665, 813, 866, 1022, 1189
CviQI GTAC 3 cut(s) 324, 542, 743
DdeI CTNAG 5 cut(s) 314, 591, 746, 785, 918
DpnI GATC 4 cut(s) 346, 397, 735, 915
DpnII GATC 4 cut(s) 344, 395, 733, 913
DraI TTTAAA 1 cut(s) 201
DraIII CACNNNGTG 1 cut(s) 317
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 823
Eco24I GRGCYC 1 cut(s) 825
Eco53kI GAGCTC 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 823
EcoRII CCWGG 4 cut(s) 751, 835, 897, 967
EcoT22I ATGCAT 1 cut(s) 1097
EcoT38I GRGCYC 1 cut(s) 825
FaeI CATG 6 cut(s) 431, 668, 816, 869, 1025, 1192
FatI CATG 6 cut(s) 427, 664, 812, 865, 1021, 1188
FauI CCCGC 2 cut(s) 74, 127
FauNDI CATATG 1 cut(s) 1091
Fnu4HI GCNGC 4 cut(s) 19, 168, 257, 533
FokI GGATG 4 cut(s) 395, 511, 644, 730
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 4 cut(s) 19, 168, 257, 533
FspBI CTAG 2 cut(s) 737, 1116
GlaI GCGC 2 cut(s) 17, 470
GluI GCNGC 4 cut(s) 19, 168, 257, 533
GsuI CTGGAG 1 cut(s) 1068
HaeIII GGCC 4 cut(s) 259, 751, 903, 964
HapII CCGG 3 cut(s) 83, 129, 449
HhaI GCGC 2 cut(s) 18, 471
Hin1II CATG 6 cut(s) 431, 668, 816, 869, 1025, 1192
Hin6I GCGC 2 cut(s) 16, 469
HinP1I GCGC 2 cut(s) 16, 469
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 3 cut(s) 439, 725, 1081
HpaII CCGG 3 cut(s) 83, 129, 449
HphI GGTGA 2 cut(s) 108, 143
Hpy166II GTNNAC 2 cut(s) 80, 791
Hpy188I TCNGA 5 cut(s) 195, 225, 334, 406, 1046
Hpy188III TCNNGA 7 cut(s) 100, 650, 710, 818, 917, 1013, 1085
Hpy8I GTNNAC 2 cut(s) 80, 791
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 4 cut(s) 38, 53, 101, 1083
HpyCH4III ACNGT 3 cut(s) 518, 615, 694
HpyCH4V TGCA 7 cut(s) 272, 524, 563, 601, 668, 886, 1095
HpyF10VI GCNNNNNNNGC 2 cut(s) 468, 653
HpyF3I CTNAG 5 cut(s) 314, 591, 746, 785, 918
Hsp92II CATG 6 cut(s) 431, 668, 816, 869, 1025, 1192
HspAI GCGC 2 cut(s) 16, 469
Kzo9I GATC 4 cut(s) 344, 395, 733, 913
LmnI GCTCC 2 cut(s) 820, 838
LweI GCATC 2 cut(s) 373, 1104
MaeI CTAG 2 cut(s) 737, 1116
MaeIII GTNAC 3 cut(s) 131, 274, 568
MalI GATC 4 cut(s) 346, 397, 735, 915
MboI GATC 4 cut(s) 344, 395, 733, 913
MboII GAAGA 6 cut(s) 38, 300, 307, 882, 947, 1124
MfeI CAATTG 2 cut(s) 261, 464
MflI RGATCY 2 cut(s) 733, 913
MhlI GDGCHC 1 cut(s) 825
MlyI GAGTC 2 cut(s) 448, 1075
MmeI TCCRAC 2 cut(s) 157, 187
MnlI CCTC 9 cut(s) 72, 373, 426, 679, 741, 794, 975, 1009, 1116
Mph1103I ATGCAT 1 cut(s) 1097
MseI TTAA 4 cut(s) 152, 200, 252, 1194
MslI CAYNNNNRTG 2 cut(s) 519, 606
MspA1I CMGCKG 1 cut(s) 167
MspCI CTTAAG 1 cut(s) 151
MspI CCGG 3 cut(s) 83, 129, 449
MspR9I CCNGG 5 cut(s) 129, 753, 837, 899, 969
MunI CAATTG 2 cut(s) 261, 464
Mva1269I GAATGC 2 cut(s) 213, 479
MvaI CCWGG 4 cut(s) 753, 837, 899, 969
MvnI CGCG 1 cut(s) 471
MwoI GCNNNNNNNGC 2 cut(s) 468, 653
NciI CCSGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 1091
NdeII GATC 4 cut(s) 344, 395, 733, 913
NlaIII CATG 6 cut(s) 431, 668, 816, 869, 1025, 1192
NlaIV GGNNCC 1 cut(s) 915
NmeAIII GCCGAG 1 cut(s) 940
NmuCI GTSAC 1 cut(s) 131
NsiI ATGCAT 1 cut(s) 1097
NspI RCATGY 3 cut(s) 816, 1025, 1192
OliI CACNNNNGTG 1 cut(s) 519
PciI ACATGT 2 cut(s) 812, 1188
PctI GAATGC 2 cut(s) 213, 479
PfeI GAWTC 1 cut(s) 725
PflMI CCANNNNNTGG 1 cut(s) 953
PkrI GCNGC 4 cut(s) 20, 169, 258, 534
PleI GAGTC 2 cut(s) 447, 1075
PpsI GAGTC 2 cut(s) 447, 1075
PscI ACATGT 2 cut(s) 812, 1188
Psp124BI GAGCTC 1 cut(s) 825
Psp6I CCWGG 4 cut(s) 751, 835, 897, 967
PspGI CCWGG 4 cut(s) 751, 835, 897, 967
PspN4I GGNNCC 1 cut(s) 915
PspPI GGNCC 1 cut(s) 901
PstI CTGCAG 1 cut(s) 888
PsuI RGATCY 2 cut(s) 733, 913
RsaI GTAC 3 cut(s) 325, 543, 744
RsaNI GTAC 3 cut(s) 324, 542, 743
RseI CAYNNNNRTG 2 cut(s) 519, 606
SacI GAGCTC 1 cut(s) 825
SaqAI TTAA 4 cut(s) 152, 200, 252, 1194
SatI GCNGC 4 cut(s) 19, 168, 257, 533
Sau3AI GATC 4 cut(s) 344, 395, 733, 913
Sau96I GGNCC 1 cut(s) 901
ScaI AGTACT 1 cut(s) 744
SchI GAGTC 2 cut(s) 448, 1075
ScrFI CCNGG 5 cut(s) 129, 753, 837, 899, 969
SduI GDGCHC 1 cut(s) 825
SfaNI GCATC 2 cut(s) 373, 1104
SfcI CTRYAG 1 cut(s) 884
SmiMI CAYNNNNRTG 2 cut(s) 519, 606
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SpeI ACTAGT 1 cut(s) 1115
SsiI CCGC 6 cut(s) 19, 67, 120, 167, 256, 532
SspMI CTAG 2 cut(s) 737, 1116
SstI GAGCTC 1 cut(s) 825
StyD4I CCNGG 5 cut(s) 127, 751, 835, 897, 967
TaaI ACNGT 3 cut(s) 518, 615, 694
TaqI TCGA 1 cut(s) 347
TatI WGTACW 1 cut(s) 742
TauI GCSGC 4 cut(s) 21, 170, 259, 535
TfiI GAWTC 1 cut(s) 725
Tru1I TTAA 4 cut(s) 152, 200, 252, 1194
Tru9I TTAA 4 cut(s) 152, 200, 252, 1194
TscAI CASTG 2 cut(s) 793, 1060
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 9 cut(s) 45, 351, 515, 624, 653, 869, 948, 996, 1124
TspGWI ACGGA 3 cut(s) 130, 503, 730
TspRI CASTG 2 cut(s) 793, 1060
Van91I CCANNNNNTGG 1 cut(s) 953
Vha464I CTTAAG 1 cut(s) 151
XapI RAATTY 7 cut(s) 72, 400, 491, 550, 640, 698, 983
XceI RCATGY 3 cut(s) 816, 1025, 1192
XcmI CCANNNNNNNNNTGG 1 cut(s) 450
XspI CTAG 2 cut(s) 737, 1116
ZrmI AGTACT 1 cut(s) 744
Zsp2I ATGCAT 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.