Rorug03G0049600
ERF Family

2OG-Fe(II) oxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007643
Physical Location & Seq
Forward (+)
3853153 .. 3856487
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0049600.1

Sequence Viewer

Length: 1002 bp
ATGGAAGAGGGGCTACTAGCTCTATCAGGGTCAAAGTCCAATATCAATGGAGCTTCAGGTGTTGTGGTTCTGAGCACATTGGTCGCTCTCTGTGGTTCCTTCGGCTATGGCTGTGCTATAGGATACTCATCATCTGCTGAGTCAGGAATTGTGGAAGACTTGGGCCTTACTGTTGCAGCATACTCAATTTTCGGTTCAACAATGACGATTGGAGGAATGATTGGTGCATTAGTAAATGGGACGATAACGGATCTCGTTGGTCGCAGAGGTACAATGTGGTTTTCTGAAATATTCAGTGCTGCAGGGTGGCTCACTATAGCATTTGCACAGAATGCTTGGTGCCTGGATTTAGGACGGTTGTCGGTGGGATTTGGTGTCGGTATAACTTGCTACGTGGTACCTGTGTACATAGCAGAAATAACACCTACTGATCTTAGAGGAAGGTTTACTTCAGCTACTCAGTTGATGCTTTGCTGCGGCGTAGCACTAATATATTTCCTTGGAAATGTCATAACCTGGCGGACCTTGGCTTTAGTCGGTGCTATTCCATCTCTTGTACACATAATAGGTCTATTTTTCATTCCAGAGTCTCCAAGGTGGCTGGCCAAAGTTGGTAGGCAAAAAGACTTTGAAGCGACTCTTCAGCGTCTTAGAGGAAAGAACACTGACACATCTCAAGAAGCAGCTGAAATCATGGATTATACAGAAATGTTTCAGCAGCACTCGGACAGAGTCCTGGACTTGTTCCAAAAGAGATATGCTCACTCACTCGTTATTGGAGTTGGGCTCATGTCACTGCAACAATTCGGGGGTACCAATGCAGTAGCATATTATGCAAGTTCTATATTTGTAGATGCAGGTTTTTCAAGTAGCATTGGGACTATATCATTGGCTATCATTGGGATACCTGGTGTTACATCGAGTGTGCTCTTAACAGACAAAGTTGGAAGACGACCACTTCTAATGGTGAGATTGGCAAATTTATCTCAGCTGTGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy_2

Protein Analysis

333

Amino Acids

35.52

Weight (kDa)

6.3

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 30 - 325 5e-23 Major Facilitator Superfamily
Sugar_tr PF00083 57 - 323 1.3e-58 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 848
Acc65I GGTACC 2 cut(s) 397, 812
AccB1I GGYRCC 3 cut(s) 339, 397, 812
AciI CCGC 2 cut(s) 477, 520
AclWI GGATC 1 cut(s) 258
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 1 cut(s) 979
AcuI CTGAAG 3 cut(s) 39, 435, 626
AfaI GTAC 5 cut(s) 271, 399, 407, 558, 814
AgsI TTSAA 3 cut(s) 198, 632, 867
AjnI CCWGG 4 cut(s) 342, 515, 735, 907
AluBI AGCT 5 cut(s) 20, 53, 455, 686, 991
AluI AGCT 5 cut(s) 20, 53, 455, 686, 991
Alw21I GWGCWC 2 cut(s) 77, 930
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 1 cut(s) 258
AoxI GGCC 2 cut(s) 163, 603
ApeKI GCWGC 5 cut(s) 176, 299, 474, 683, 718
ApoI RAATTY 1 cut(s) 979
Asp700I GAANNNNTTC 1 cut(s) 711
Asp718I GGTACC 2 cut(s) 397, 812
AspS9I GGNCC 2 cut(s) 163, 522
AsuHPI GGTGA 1 cut(s) 979
AvaII GGWCC 1 cut(s) 522
BaeI ACNNNNGTAYC 2 cut(s) 389, 422
BalI TGGCCA 1 cut(s) 605
BanI GGYRCC 3 cut(s) 339, 397, 812
BanII GRGCYC 1 cut(s) 789
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 162, 955
Bbv12I GWGCWC 2 cut(s) 77, 930
BbvI GCAGC 5 cut(s) 188, 286, 461, 695, 730
BccI CCATC 1 cut(s) 556
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BciT130I CCWGG 4 cut(s) 344, 517, 737, 909
BciVI GTATCC 2 cut(s) 116, 897
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 3 cut(s) 117, 300, 315
BfuAI ACCTGC 1 cut(s) 848
BfuI GTATCC 2 cut(s) 116, 897
BisI GCNGC 6 cut(s) 177, 300, 475, 478, 684, 719
BlsI GCNGC 6 cut(s) 178, 301, 476, 479, 685, 720
Bme1390I CCNGG 4 cut(s) 344, 517, 737, 909
Bme18I GGWCC 1 cut(s) 522
BmgT120I GGNCC 2 cut(s) 163, 522
BmiI GGNNCC 4 cut(s) 97, 341, 399, 814
BmrFI CCNGG 4 cut(s) 344, 517, 737, 909
BmsI GCATC 2 cut(s) 456, 844
BoxI GACNNNNGTC 1 cut(s) 358
BpiI GAAGAC 2 cut(s) 162, 955
BplI GAGNNNNNCTC 4 cut(s) 745, 777, 771, 803
BpuEI CTTGAG 1 cut(s) 660
BsaAI YACGTR 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 499, 525, 593
Bse8I GATNNNNATC 1 cut(s) 127
BseBI CCWGG 4 cut(s) 344, 517, 737, 909
BseDI CCNNGG 3 cut(s) 499, 525, 593
BseJI GATNNNNATC 1 cut(s) 127
BseMII CTCAG 4 cut(s) 62, 129, 473, 1001
BseXI GCAGC 5 cut(s) 188, 286, 461, 695, 730
BshFI GGCC 2 cut(s) 165, 605
BshNI GGYRCC 3 cut(s) 339, 397, 812
BsiHKAI GWGCWC 2 cut(s) 77, 930
BslFI GGGAC 2 cut(s) 253, 892
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 2 cut(s) 253, 892
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 2 cut(s) 165, 605
Bsp1286I GDGCHC 3 cut(s) 77, 789, 930
Bsp1407I TGTACA 2 cut(s) 405, 556
Bsp143I GATC 2 cut(s) 250, 430
BspACI CCGC 2 cut(s) 477, 520
BspANI GGCC 2 cut(s) 165, 605
BspCNI CTCAG 4 cut(s) 63, 130, 472, 1000
BspLI GGNNCC 4 cut(s) 97, 341, 399, 814
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 848
BspPI GGATC 1 cut(s) 258
BspT107I GGYRCC 3 cut(s) 339, 397, 812
BsrGI TGTACA 2 cut(s) 405, 556
BssECI CCNNGG 3 cut(s) 499, 525, 593
BssMI GATC 2 cut(s) 250, 430
BssT1I CCWWGG 3 cut(s) 499, 525, 593
Bst2UI CCWGG 4 cut(s) 344, 517, 737, 909
Bst4CI ACNGT 2 cut(s) 172, 357
Bst6I CTCTTC 1 cut(s) 645
BstAPI GCANNNNNTGC 2 cut(s) 332, 833
BstAUI TGTACA 2 cut(s) 405, 556
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 6 cut(s) 71, 138, 434, 459, 650, 987
BstKTI GATC 2 cut(s) 253, 433
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 2 cut(s) 250, 430
BstMWI GCNNNNNNNGC 2 cut(s) 332, 833
BstNI CCWGG 4 cut(s) 344, 517, 737, 909
BstPAI GACNNNNGTC 1 cut(s) 358
BstSCI CCNGG 4 cut(s) 342, 515, 735, 907
BstSFI CTRYAG 3 cut(s) 117, 300, 315
BstV1I GCAGC 5 cut(s) 188, 286, 461, 695, 730
BstV2I GAAGAC 2 cut(s) 162, 955
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuI GTATCC 2 cut(s) 116, 897
BsuRI GGCC 2 cut(s) 165, 605
BtsI GCAGTG 1 cut(s) 794
BtsIMutI CAGTG 3 cut(s) 301, 663, 794
BveI ACCTGC 1 cut(s) 848
Cac8I GCNNGC 1 cut(s) 603
Cfr13I GGNCC 2 cut(s) 163, 522
CseI GACGC 1 cut(s) 635
CsiI ACCWGGT 1 cut(s) 907
Csp6I GTAC 5 cut(s) 270, 398, 406, 557, 813
CviAII CATG 2 cut(s) 694, 790
CviQI GTAC 5 cut(s) 270, 398, 406, 557, 813
DdeI CTNAG 6 cut(s) 71, 138, 434, 459, 650, 987
DpnI GATC 2 cut(s) 252, 432
DpnII GATC 2 cut(s) 250, 430
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
EciI GGCGGA 1 cut(s) 535
Eco130I CCWWGG 3 cut(s) 499, 525, 593
Eco24I GRGCYC 1 cut(s) 789
Eco47I GGWCC 1 cut(s) 522
Eco57I CTGAAG 3 cut(s) 39, 435, 626
EcoRII CCWGG 4 cut(s) 342, 515, 735, 907
EcoT14I CCWWGG 3 cut(s) 499, 525, 593
EcoT38I GRGCYC 1 cut(s) 789
ErhI CCWWGG 3 cut(s) 499, 525, 593
FaeI CATG 2 cut(s) 697, 793
FalI AAGNNNNNCTT 4 cut(s) 433, 465, 624, 656
FaqI GGGAC 2 cut(s) 253, 892
FatI CATG 2 cut(s) 693, 789
Fnu4HI GCNGC 6 cut(s) 177, 300, 475, 478, 684, 719
FriOI GRGCYC 1 cut(s) 789
Fsp4HI GCNGC 6 cut(s) 177, 300, 475, 478, 684, 719
FspBI CTAG 1 cut(s) 17
GluI GCNGC 6 cut(s) 177, 300, 475, 478, 684, 719
HaeIII GGCC 2 cut(s) 165, 605
HgaI GACGC 1 cut(s) 635
Hin1II CATG 2 cut(s) 697, 793
HinfI GANTC 4 cut(s) 140, 587, 637, 732
HphI GGTGA 1 cut(s) 979
Hpy166II GTNNAC 3 cut(s) 406, 447, 559
Hpy188I TCNGA 3 cut(s) 72, 286, 727
Hpy188III TCNNGA 3 cut(s) 144, 584, 677
Hpy8I GTNNAC 3 cut(s) 406, 447, 559
HpyAV CCTTC 2 cut(s) 109, 435
HpyCH4III ACNGT 2 cut(s) 172, 357
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 8 cut(s) 176, 227, 302, 326, 799, 821, 836, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 833
HpyF3I CTNAG 6 cut(s) 71, 138, 434, 459, 650, 987
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 2 cut(s) 697, 793
KpnI GGTACC 2 cut(s) 401, 816
Kzo9I GATC 2 cut(s) 250, 430
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 5 cut(s) 188, 286, 461, 695, 730
LweI GCATC 2 cut(s) 456, 844
MabI ACCWGGT 1 cut(s) 907
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 792, 913
MalI GATC 2 cut(s) 252, 432
MboI GATC 2 cut(s) 250, 430
MboII GAAGA 4 cut(s) 17, 167, 632, 960
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 3 cut(s) 77, 789, 930
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 4 cut(s) 147, 186, 803, 979
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 4 cut(s) 149, 596, 631, 741
MmeI TCCRAC 1 cut(s) 925
MnlI CCTC 4 cut(s) 206, 260, 431, 647
Mox20I TGGCCA 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 711
MscI TGGCCA 1 cut(s) 605
MseI TTAA 1 cut(s) 932
Msp20I TGGCCA 1 cut(s) 605
MspA1I CMGCKG 2 cut(s) 686, 991
MspR9I CCNGG 4 cut(s) 344, 517, 737, 909
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 4 cut(s) 344, 517, 737, 909
MwoI GCNNNNNNNGC 2 cut(s) 332, 833
NdeII GATC 2 cut(s) 250, 430
NlaIII CATG 2 cut(s) 697, 793
NlaIV GGNNCC 4 cut(s) 97, 341, 399, 814
NmuCI GTSAC 1 cut(s) 792
PctI GAATGC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 711
PflFI GACNNNGTC 1 cut(s) 731
PfoI TCCNGGA 1 cut(s) 735
PkrI GCNGC 6 cut(s) 178, 301, 476, 479, 685, 720
PleI GAGTC 4 cut(s) 148, 595, 631, 740
PpsI GAGTC 4 cut(s) 148, 595, 631, 740
Ppu21I YACGTR 1 cut(s) 394
PshAI GACNNNNGTC 1 cut(s) 358
Psp6I CCWGG 4 cut(s) 342, 515, 735, 907
PspGI CCWGG 4 cut(s) 342, 515, 735, 907
PspN4I GGNNCC 4 cut(s) 97, 341, 399, 814
PspPI GGNCC 2 cut(s) 163, 522
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 250
PsyI GACNNNGTC 1 cut(s) 731
PvuII CAGCTG 2 cut(s) 686, 991
RsaI GTAC 5 cut(s) 271, 399, 407, 558, 814
RsaNI GTAC 5 cut(s) 270, 398, 406, 557, 813
SaqAI TTAA 1 cut(s) 932
SatI GCNGC 6 cut(s) 177, 300, 475, 478, 684, 719
Sau3AI GATC 2 cut(s) 250, 430
Sau96I GGNCC 2 cut(s) 163, 522
SchI GAGTC 4 cut(s) 149, 596, 631, 741
ScrFI CCNGG 4 cut(s) 344, 517, 737, 909
SduI GDGCHC 3 cut(s) 77, 789, 930
SexAI ACCWGGT 1 cut(s) 907
SfaNI GCATC 2 cut(s) 456, 844
SfcI CTRYAG 3 cut(s) 117, 300, 315
SinI GGWCC 1 cut(s) 522
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
Sse9I AATT 4 cut(s) 147, 186, 803, 979
SsiI CCGC 2 cut(s) 477, 520
SspI AATATT 1 cut(s) 291
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 342, 515, 735, 907
StyI CCWWGG 3 cut(s) 499, 525, 593
TaaI ACNGT 2 cut(s) 172, 357
TaiI ACGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 920
TasI AATT 4 cut(s) 147, 186, 803, 979
TatI WGTACW 2 cut(s) 405, 556
TauI GCSGC 1 cut(s) 480
Tru1I TTAA 1 cut(s) 932
Tru9I TTAA 1 cut(s) 932
TscAI CASTG 3 cut(s) 301, 670, 801
TseFI GTSAC 1 cut(s) 792
TseI GCWGC 5 cut(s) 176, 299, 474, 683, 718
Tsp45I GTSAC 1 cut(s) 792
TspDTI ATGAA 1 cut(s) 568
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 3 cut(s) 301, 670, 801
Tth111I GACNNNGTC 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 522
XapI RAATTY 1 cut(s) 979
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.