Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Forward (+)

413281 .. 416279

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGCTTCTAACGATCCAAAAAACGGCGGCGGTTTCTTCGCCTCTCTTGCTTCATCCATCACCAATTTCGGATCGGCCATGAGTAAATCAGTGAACGGTTTGATGGGATATGAAGGGCTTGAAGTGATTAATCCAGAAGGAAGTACAGACGATGCAGAGGAAGAAGCAGGGAGAGGAAGATGGAAGCAAGAGGAACGTGATGGCTATTGGAAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTGAGTTGATGGAATACTCATATTTGCTAGACATGGCTGACAAAACTGAAGATCCTTACATGCGTATGGTATATGCATCATCATGGGCTATATCTGTGTATTACGCCTACCAGCGTACCTGGAAGCCGTTCAATCCAATTCTCGGTGAGACTTATGAGATGACTAATCATAATGGGATCAATTTTATAGCTGAACAGGTCTGCCATCACCCACCAATGAGTGCTGGTCATGCTGAAAACGAGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATTCCTAGGCAACTCAATTGATGTCTACCCAGTAGGAAGGACACGAGTGACACTTAAAAGAGATGGTGTCGTTCTTGATCTTGTACCTCCACTGACAAAGGTTCATAACCTTATCTTCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGTGGCTGGTTTGGATCTGGACGATATGAAGTGGACGGTTACGTGTATAATTCAGCTGAAGAGCCCAAGATGCTAATGACCGGAAAATGGAACGAGTCCTTGAGTTATCAGCCATGTGATGCGGAAGGCGAACCTCTTCCAGGCACCGAACTGAAGGAGGTGTGGAAGGTTGCTGAAGCTCCAAAGAACGATAAATACCAATACACACATTTTGCTCACAAGATCAATAGTTTTGACACTGCCCCTAAAAAGCTACTGTCATCTGATTCACGTCTACGTCCTGATAGATACGCGCTGGAGATGGGTGATATGTCCAAATCTGGATTCGAAAAGAGCAGCCTAGAGGATAGACAAAGAGCTGAGAAGAAAAGCAGAGAAGAGAAAGGCCAAAAATTTGCTCCAAAATGGTTTGATGAAACAGAAGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTTTACCAATTCAATGGAAAGTACTCGGTGCACCGCGCCACAGCTGAAAACTCTGAGGATACAACCGATGTGAAGTTGACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

453

Amino Acids

51.54

Weight (kDa)

5.12

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	42 - 399	8.4e-114	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	929
AccI	GTMKAC	2 cut(s)	609, 1060
AccII	CGCG	2 cut(s)	1079, 1278
AciI	CCGC	4 cut(s)	27, 30, 908, 1276
AclWI	GGATC	5 cut(s)	8, 79, 350, 488, 808
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	584, 1178
AcuI	CTGAAG	4 cut(s)	372, 864, 959, 981
AfaI	GTAC	4 cut(s)	145, 421, 669, 1265
AfiI	CCNNNNNNNGG	4 cut(s)	23, 446, 873, 926
AflIII	ACRYGT	1 cut(s)	828
AgsI	TTSAA	7 cut(s)	122, 278, 436, 570, 782, 1255, 1330
AjiI	CACGTC	1 cut(s)	1058
AjnI	CCWGG	3 cut(s)	422, 724, 925
AjuI	GAANNNNNNNTTGG	2 cut(s)	1094, 1126
AluBI	AGCT	6 cut(s)	494, 842, 965, 1039, 1145, 1286
AluI	AGCT	6 cut(s)	494, 842, 965, 1039, 1145, 1286
Alw21I	GWGCWC	1 cut(s)	1275
Alw26I	GTCTC	1 cut(s)	446
Alw44I	GTGCAC	1 cut(s)	1271
AlwI	GGATC	5 cut(s)	8, 79, 350, 488, 808
AoxI	GGCC	2 cut(s)	75, 1171
ApaLI	GTGCAC	1 cut(s)	1271
ApeKI	GCWGC	1 cut(s)	1122
ApoI	RAATTY	2 cut(s)	584, 1178
AseI	ATTAAT	1 cut(s)	129
Asp700I	GAANNNNTTC	2 cut(s)	431, 921
AspA2I	CCTAGG	1 cut(s)	589
AspLEI	GCGC	2 cut(s)	1081, 1280
AsuHPI	GGTGA	6 cut(s)	52, 461, 503, 770, 1103, 1244
AsuII	TTCGAA	1 cut(s)	1113
AvrII	CCTAGG	1 cut(s)	589
BaeGI	GKGCMC	1 cut(s)	1275
BaeI	ACNNNNGTAYC	2 cut(s)	403, 436
BanI	GGYRCC	1 cut(s)	929
BanII	GRGCYC	1 cut(s)	852
BauI	CACGAG	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	1275
BbvI	GCAGC	1 cut(s)	1134
BccI	CCATC	9 cut(s)	65, 97, 174, 194, 307, 516, 641, 727, 1081
BceAI	ACGGC	2 cut(s)	40, 415
BciT130I	CCWGG	3 cut(s)	424, 726, 927
BciVI	GTATCC	1 cut(s)	1294
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	3 cut(s)	332, 590, 1127
BfuI	GTATCC	1 cut(s)	1294
BglII	AGATCT	1 cut(s)	1348
BisI	GCNGC	2 cut(s)	28, 1123
BlnI	CCTAGG	1 cut(s)	589
BlsI	GCNGC	2 cut(s)	29, 1124
BmcAI	AGTACT	1 cut(s)	1265
Bme1390I	CCNGG	3 cut(s)	424, 726, 927
BmgBI	CACGTC	1 cut(s)	1058
BmiI	GGNNCC	1 cut(s)	931
BmrFI	CCNGG	3 cut(s)	424, 726, 927
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	5 cut(s)	142, 207, 389, 846, 895
BmuI	ACTGGG	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	1103
Bpu14I	TTCGAA	1 cut(s)	1113
BpuEI	CTTGAG	1 cut(s)	907
BsaAI	YACGTR	1 cut(s)	829
BsaJI	CCNNGG	3 cut(s)	589, 1226, 1334
BsaWI	WCCGGW	1 cut(s)	866
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 446, 873, 926
Bse1I	ACTGG	2 cut(s)	614, 760
BseBI	CCWGG	3 cut(s)	424, 726, 927
BseDI	CCNNGG	3 cut(s)	589, 1226, 1334
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	4 cut(s)	23, 446, 873, 926
BseMII	CTCAG	3 cut(s)	297, 1137, 1287
BseNI	ACTGG	2 cut(s)	614, 760
BseSI	GKGCMC	1 cut(s)	1275
BseXI	GCAGC	1 cut(s)	1134
Bsh1236I	CGCG	2 cut(s)	1079, 1278
Bsh1285I	CGRYCG	1 cut(s)	706
BshFI	GGCC	2 cut(s)	77, 1173
BshNI	GGYRCC	1 cut(s)	929
BsiEI	CGRYCG	1 cut(s)	706
BsiHKAI	GWGCWC	1 cut(s)	1275
BsiSI	CCGG	1 cut(s)	867
BslI	CCNNNNNNNGG	4 cut(s)	23, 446, 873, 926
BsmAI	GTCTC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	77, 1173
Bsp119I	TTCGAA	1 cut(s)	1113
Bsp1286I	GDGCHC	2 cut(s)	852, 1275
Bsp19I	CCATGG	1 cut(s)	1226
BspACI	CCGC	4 cut(s)	27, 30, 908, 1276
BspANI	GGCC	2 cut(s)	77, 1173
BspCNI	CTCAG	3 cut(s)	298, 1138, 1288
BspFNI	CGCG	2 cut(s)	1079, 1278
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	1 cut(s)	931
BspPI	GGATC	5 cut(s)	8, 79, 350, 488, 808
BspQI	GCTCTTC	1 cut(s)	840
BspT104I	TTCGAA	1 cut(s)	1113
BspT107I	GGYRCC	1 cut(s)	929
BsrI	ACTGG	2 cut(s)	614, 760
BssECI	CCNNGG	3 cut(s)	589, 1226, 1334
BssSI	CACGAG	1 cut(s)	627
BssT1I	CCWWGG	3 cut(s)	589, 1226, 1334
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	3 cut(s)	424, 726, 927
Bst4CI	ACNGT	3 cut(s)	98, 824, 1044
Bst6I	CTCTTC	4 cut(s)	264, 840, 927, 1158
BstBAI	YACGTR	1 cut(s)	829
BstBI	TTCGAA	1 cut(s)	1113
BstDEI	CTNAG	3 cut(s)	306, 1146, 1296
BstDSI	CCRYGG	1 cut(s)	1226
BstENI	CCTNNNNNAGG	1 cut(s)	924
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	2 cut(s)	1079, 1278
BstHHI	GCGC	2 cut(s)	1081, 1280
BstMAI	GTCTC	1 cut(s)	446
BstMCI	CGRYCG	1 cut(s)	706
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 533, 856
BstNI	CCWGG	3 cut(s)	424, 726, 927
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	422, 724, 925
BstSLI	GKGCMC	1 cut(s)	1275
BstUI	CGCG	2 cut(s)	1079, 1278
BstV1I	GCAGC	1 cut(s)	1134
BstX2I	RGATCY	3 cut(s)	355, 800, 1348
BstXI	CCANNNNNNTGG	2 cut(s)	792, 1256
BstYI	RGATCY	3 cut(s)	355, 800, 1348
BsuI	GTATCC	1 cut(s)	1294
BsuRI	GGCC	2 cut(s)	77, 1173
BtgI	CCRYGG	1 cut(s)	1226
BtrI	CACGTC	1 cut(s)	1058
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	1023
BtsIMutI	CAGTG	4 cut(s)	96, 674, 753, 1023
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	2 cut(s)	1081, 1280
Csp6I	GTAC	4 cut(s)	144, 420, 668, 1264
CviQI	GTAC	4 cut(s)	144, 420, 668, 1264
DdeI	CTNAG	3 cut(s)	306, 1146, 1296
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	4 cut(s)	264, 840, 927, 1158
EarI	CTCTTC	4 cut(s)	264, 840, 927, 1158
Eco130I	CCWWGG	3 cut(s)	589, 1226, 1334
Eco24I	GRGCYC	1 cut(s)	852
Eco57I	CTGAAG	4 cut(s)	372, 864, 959, 981
EcoNI	CCTNNNNNAGG	1 cut(s)	924
EcoRII	CCWGG	3 cut(s)	422, 724, 925
EcoT14I	CCWWGG	3 cut(s)	589, 1226, 1334
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	852
ErhI	CCWWGG	3 cut(s)	589, 1226, 1334
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	2 cut(s)	609, 1060
Fnu4HI	GCNGC	2 cut(s)	28, 1123
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	2 cut(s)	28, 1123
FspBI	CTAG	3 cut(s)	332, 590, 1127
GlaI	GCGC	2 cut(s)	1080, 1279
GluI	GCNGC	2 cut(s)	28, 1123
GsuI	CTGGAG	1 cut(s)	1103
HaeIII	GGCC	2 cut(s)	77, 1173
HapII	CCGG	1 cut(s)	867
HhaI	GCGC	2 cut(s)	1081, 1280
Hin6I	GCGC	2 cut(s)	1079, 1278
HinP1I	GCGC	2 cut(s)	1079, 1278
HincII	GTYRAC	1 cut(s)	1320
HindII	GTYRAC	1 cut(s)	1320
HinfI	GANTC	4 cut(s)	719, 881, 1052, 1110
HpaII	CCGG	1 cut(s)	867
HphI	GGTGA	6 cut(s)	52, 461, 503, 770, 1103, 1244
Hpy166II	GTNNAC	7 cut(s)	94, 610, 820, 1061, 1246, 1273, 1320
Hpy188I	TCNGA	4 cut(s)	71, 238, 1051, 1297
Hpy188III	TCNNGA	7 cut(s)	134, 659, 739, 804, 1067, 1107, 1238
Hpy8I	GTNNAC	7 cut(s)	94, 610, 820, 1061, 1246, 1273, 1320
HpyAV	CCTTC	6 cut(s)	107, 131, 615, 905, 934, 946
HpyCH4III	ACNGT	3 cut(s)	98, 824, 1044
HpyCH4IV	ACGT	4 cut(s)	196, 828, 1057, 1063
HpyCH4V	TGCA	6 cut(s)	155, 220, 295, 380, 564, 1273
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 533, 856
HpyF3I	CTNAG	3 cut(s)	306, 1146, 1296
HpySE526I	ACGT	4 cut(s)	196, 828, 1057, 1063
HspAI	GCGC	2 cut(s)	1079, 1278
Ksp22I	TGATCA	1 cut(s)	267
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	2 cut(s)	970, 1189
Lsp1109I	GCAGC	1 cut(s)	1134
LweI	GCATC	5 cut(s)	142, 207, 389, 846, 895
MaeI	CTAG	3 cut(s)	332, 590, 1127
MaeII	ACGT	4 cut(s)	196, 828, 1057, 1063
MaeIII	GTNAC	6 cut(s)	241, 253, 631, 758, 824, 1213
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	3 cut(s)	355, 800, 1348
MhlI	GDGCHC	2 cut(s)	852, 1275
MlyI	GAGTC	1 cut(s)	890
MnlI	CCTC	9 cut(s)	52, 151, 167, 184, 681, 930, 937, 1123, 1291
Mph1103I	ATGCAT	1 cut(s)	382
MroXI	GAANNNNTTC	2 cut(s)	431, 921
MseI	TTAA	3 cut(s)	129, 639, 1360
MslI	CAYNNNNRTG	3 cut(s)	287, 368, 385
MspA1I	CMGCKG	2 cut(s)	842, 1286
MspI	CCGG	1 cut(s)	867
MspR9I	CCNGG	3 cut(s)	424, 726, 927
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	3 cut(s)	424, 726, 927
MvnI	CGCG	2 cut(s)	1079, 1278
MwoI	GCNNNNNNNGC	3 cut(s)	47, 533, 856
NcoI	CCATGG	1 cut(s)	1226
NlaIV	GGNNCC	1 cut(s)	931
NmuCI	GTSAC	3 cut(s)	631, 758, 1213
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	1113
PagI	TCATGA	1 cut(s)	738
PciSI	GCTCTTC	1 cut(s)	840
PdmI	GAANNNNTTC	2 cut(s)	431, 921
PfeI	GAWTC	3 cut(s)	719, 1052, 1110
PkrI	GCNGC	2 cut(s)	29, 1124
PleI	GAGTC	1 cut(s)	889
PpsI	GAGTC	1 cut(s)	889
Ppu21I	YACGTR	1 cut(s)	829
PshBI	ATTAAT	1 cut(s)	129
Psp6I	CCWGG	3 cut(s)	422, 724, 925
PspGI	CCWGG	3 cut(s)	422, 724, 925
PspN4I	GGNNCC	1 cut(s)	931
PsrI	GAACNNNNNNTAC	2 cut(s)	965, 997
PsuI	RGATCY	3 cut(s)	355, 800, 1348
PvuII	CAGCTG	2 cut(s)	842, 1286
RsaI	GTAC	4 cut(s)	145, 421, 669, 1265
RsaNI	GTAC	4 cut(s)	144, 420, 668, 1264
RseI	CAYNNNNRTG	3 cut(s)	287, 368, 385
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	129, 639, 1360
SatI	GCNGC	2 cut(s)	28, 1123
ScaI	AGTACT	1 cut(s)	1265
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	3 cut(s)	424, 726, 927
SduI	GDGCHC	2 cut(s)	852, 1275
SfaNI	GCATC	5 cut(s)	142, 207, 389, 846, 895
SfuI	TTCGAA	1 cut(s)	1113
SmiMI	CAYNNNNRTG	3 cut(s)	287, 368, 385
SmlI	CTYRAG	1 cut(s)	886
SmoI	CTYRAG	1 cut(s)	886
SsiI	CCGC	4 cut(s)	27, 30, 908, 1276
SspMI	CTAG	3 cut(s)	332, 590, 1127
StyD4I	CCNGG	3 cut(s)	422, 724, 925
StyI	CCWWGG	3 cut(s)	589, 1226, 1334
TaaI	ACNGT	3 cut(s)	98, 824, 1044
TaiI	ACGT	4 cut(s)	199, 831, 1060, 1066
TaqI	TCGA	4 cut(s)	706, 717, 1113, 1239
TaqII	GACCGA	1 cut(s)	692
TatI	WGTACW	2 cut(s)	143, 1263
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	3 cut(s)	719, 1052, 1110
Tru1I	TTAA	3 cut(s)	129, 639, 1360
Tru9I	TTAA	3 cut(s)	129, 639, 1360
TscAI	CASTG	4 cut(s)	96, 681, 760, 1030
TseFI	GTSAC	3 cut(s)	631, 758, 1213
TseI	GCWGC	1 cut(s)	1122
Tsp45I	GTSAC	3 cut(s)	631, 758, 1213
TspDTI	ATGAA	5 cut(s)	42, 126, 677, 828, 1215
TspRI	CASTG	4 cut(s)	96, 681, 760, 1030
VneI	GTGCAC	1 cut(s)	1271
VspI	ATTAAT	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	924
XapI	RAATTY	2 cut(s)	584, 1178
XceI	RCATGY	1 cut(s)	367
XmaJI	CCTAGG	1 cut(s)	589
XmiI	GTMKAC	2 cut(s)	609, 1060
XmnI	GAANNNNTTC	2 cut(s)	431, 921
XspI	CTAG	3 cut(s)	332, 590, 1127
ZrmI	AGTACT	1 cut(s)	1265
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.