MD04G1130200.v1.1

Belongs to the OSBP family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
21672971 .. 21677865
4895 bp
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UTR
Exon/CDS
Intron
MD04G1130200.v1.1.491

Sequence Viewer

Length: 1377 bp
ATGGCTCCCAATCCCAAGGATCCGAAGCAAAGCGGAGGTTTCTTCGCCTCCATGGCTTCCACTTTGACCAATCTAGGTAGCGCCATGACCAAATCCGTCAACGGCATAATGGGTTATGAGGGGCTGGAGGTTATCAATCCAGATGGAGGCCAGGAAGATCTCGAAGACGAAGCAAGGAAAGGAAGATGGAAGCAGGAGGATCGGGATGGTTACTGGAAGATAATGCAGAAGTATATTGGCTCTGACGTCACATCAATGGTGACCCTTCCAGTACTTATTTTTGAGCCAATGACTATGCTGCAGAAAATGGCAGAGATTATGGAATACTCCCATCTGTTAGATCTTGCAGATGAATGTGAGGATCCATACATGAGATCAGTATATGTTGCATCATTTTTCATATCTGTCTACTTTGCCTTTCAACGAACCTGGAAGCCATTCAATCCAATACTTGGTGAGACTTATGAAATGGTTAATCATGGGGGCGTTAGTTTTCTATCAGAACAGGTCAGTCATCACCCTCCTATGAGTGCTGGTCATGCTGAAAATGAGCATTTTATTTATGACATAACGTCGAAGGTGAAAACCAAATTTTTGGGGAACTCACTTGATATCTATCCAGTCGGAAGAACGCGTTTGACCCTCAAAAGAGATGGTGTAGAATTTGAATTGGCACCCCCTCCAACAAAAGTTAACAACTTAATTTTTGGACGAACATGGGTCGATTCACCAGGAGATATGGTTTTGACCAATTTGACCACAGGGGACAAAGTTGTGCTGTATTTCCAACCATGCGGCTGGTTTGGATCTGGTCGCTATGAAGTAGATGGATATGTTTATAATTCTGCCGAGGATCCTAAAATATTGATGACTGGAAAATGGAACGAGTCAATGAGTTATCAACCCTGTGACTCCGAAGGGGAGCCACTTCCTGGCACTGAACTGAAAGAGGTTTGGAGAGTTGCTGATGTTCCAGAAAATGACAAATTCCAGTACACACATTTTGCACACAAAATAAACAGCTTTGACACTGCTCCTAAGAAATTATTGGCATCAGATTCTCGCCTGCGTCCTGATAGATACGCGCTGGAGCAGGGGGACCTATCCAAAGCCGGTTTTGAAAAGAGCAGCTTGGAGGAGAGGCAGAGAGCTGAGAAGAAAAATCGACTGGAAAAAGGACACGAGTTTACTCCAAGGTGGTTTGACAAAACAGATGAAGTCTTCAAGACAACATGGGATGACATGGAAGTGTACCGTTACAATGGAAAGTACACAGAACACCGGGCTGCAATAGACAACTCGGACAGCGTCGAAGCGATTGACGTCAAATCAATAGAGTTCAACCCCTGGCAATACGAGGATTTGGCTACTGCTTAA

Protein Analysis

459

Amino Acids

52.33

Weight (kDa)

5.0

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 71 - 428 1.1e-113 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 840
AatII GACGTC 2 cut(s) 249, 1326
AccB1I GGYRCC 1 cut(s) 673
AccB7I CCANNNNNTGG 2 cut(s) 452, 932
AccI GTMKAC 1 cut(s) 408
AccII CGCG 2 cut(s) 634, 1085
AciI CCGC 2 cut(s) 33, 795
AclWI GGATC 8 cut(s) 14, 27, 207, 356, 369, 814, 848, 861
AcsI RAATTY 3 cut(s) 590, 662, 986
AcyI GRCGYC 2 cut(s) 246, 1323
AfaI GTAC 4 cut(s) 273, 995, 1253, 1271
AfiI CCNNNNNNNGG 3 cut(s) 146, 452, 932
AflIII ACRYGT 1 cut(s) 632
AgsI TTSAA 6 cut(s) 422, 442, 668, 1121, 1225, 1342
AhdI GACNNNNNGTC 1 cut(s) 571
AjnI CCWGG 5 cut(s) 150, 428, 730, 931, 1346
AluBI AGCT 3 cut(s) 1023, 1131, 1151
AluI AGCT 3 cut(s) 1023, 1131, 1151
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 8 cut(s) 14, 27, 207, 356, 369, 814, 848, 861
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 3 cut(s) 298, 1128, 1286
ApoI RAATTY 3 cut(s) 590, 662, 986
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 2 cut(s) 83, 1087
AspS9I GGNCC 1 cut(s) 1099
AsuC2I CCSGG 1 cut(s) 1283
AsuHPI GGTGA 5 cut(s) 271, 467, 509, 592, 720
AvaII GGWCC 1 cut(s) 1099
BamHI GGATCC 3 cut(s) 19, 361, 853
BanI GGYRCC 1 cut(s) 673
BauI CACGAG 1 cut(s) 1181
BbsI GAAGAC 2 cut(s) 171, 1213
BbvI GCAGC 3 cut(s) 285, 1140, 1273
BccI CCATC 6 cut(s) 137, 180, 200, 339, 647, 821
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 5 cut(s) 152, 430, 732, 933, 1348
BcnI CCSGG 1 cut(s) 1283
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 84
BglI GCCNNNNNGGC 1 cut(s) 53
BglII AGATCT 2 cut(s) 157, 340
BisI GCNGC 4 cut(s) 299, 796, 1129, 1287
BlsI GCNGC 4 cut(s) 300, 797, 1130, 1288
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 6 cut(s) 152, 430, 732, 933, 1283, 1348
Bme18I GGWCC 1 cut(s) 1099
BmeRI GACNNNNNGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 1099
BmiI GGNNCC 7 cut(s) 6, 21, 363, 675, 855, 924, 1100
BmrFI CCNGG 6 cut(s) 152, 430, 732, 933, 1283, 1348
BmsI GCATC 2 cut(s) 398, 1061
BpiI GAAGAC 2 cut(s) 171, 1213
BpmI CTGGAG 2 cut(s) 146, 1109
BpuMI CCSGG 1 cut(s) 1283
BsaBI GATNNNNATC 1 cut(s) 615
BsaHI GRCGYC 2 cut(s) 246, 1323
BsaJI CCNNGG 5 cut(s) 15, 51, 849, 1193, 1346
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 452, 932
Bse118I RCCGGY 1 cut(s) 1112
Bse1I ACTGG 6 cut(s) 218, 269, 620, 877, 991, 1173
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 5 cut(s) 152, 430, 732, 933, 1348
BseDI CCNNGG 5 cut(s) 15, 51, 849, 1193, 1346
BseGI GGATG 2 cut(s) 211, 1243
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 3 cut(s) 146, 452, 932
BseMII CTCAG 1 cut(s) 1143
BseNI ACTGG 6 cut(s) 218, 269, 620, 877, 991, 1173
BseRI GAGGAG 1 cut(s) 1151
BseXI GCAGC 3 cut(s) 285, 1140, 1273
Bsh1236I CGCG 2 cut(s) 634, 1085
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 673
BsiSI CCGG 2 cut(s) 1113, 1282
BslFI GGGAC 2 cut(s) 779, 1112
BslI CCNNNNNNNGG 3 cut(s) 146, 452, 932
BsmAI GTCTC 1 cut(s) 452
BsmFI GGGAC 2 cut(s) 779, 1112
BsnI GGCC 1 cut(s) 150
Bsp143I GATC 8 cut(s) 19, 157, 199, 340, 361, 374, 806, 853
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 2 cut(s) 33, 795
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 1144
BspFNI CGCG 2 cut(s) 634, 1085
BspLI GGNNCC 7 cut(s) 6, 21, 363, 675, 855, 924, 1100
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 8 cut(s) 14, 27, 207, 356, 369, 814, 848, 861
BspT107I GGYRCC 1 cut(s) 673
BsrFI RCCGGY 1 cut(s) 1112
BsrI ACTGG 6 cut(s) 218, 269, 620, 877, 991, 1173
BssAI RCCGGY 1 cut(s) 1112
BssECI CCNNGG 5 cut(s) 15, 51, 849, 1193, 1346
BssMI GATC 8 cut(s) 19, 157, 199, 340, 361, 374, 806, 853
BssNI GRCGYC 2 cut(s) 246, 1323
BssSI CACGAG 1 cut(s) 1181
BssT1I CCWWGG 3 cut(s) 15, 51, 1193
Bst2BI CACGAG 1 cut(s) 1181
Bst2UI CCWGG 5 cut(s) 152, 430, 732, 933, 1348
Bst4CI ACNGT 1 cut(s) 1256
BstACI GRCGYC 2 cut(s) 246, 1323
BstC8I GCNNGC 1 cut(s) 1067
BstDEI CTNAG 2 cut(s) 1038, 1152
BstDSI CCRYGG 1 cut(s) 51
BstEII GGTNACC 1 cut(s) 259
BstF5I GGATG 2 cut(s) 211, 1243
BstFNI CGCG 2 cut(s) 634, 1085
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 2 cut(s) 83, 1087
BstKTI GATC 8 cut(s) 22, 160, 202, 343, 364, 377, 809, 856
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 8 cut(s) 19, 157, 199, 340, 361, 374, 806, 853
BstMWI GCNNNNNNNGC 2 cut(s) 53, 539
BstNI CCWGG 5 cut(s) 152, 430, 732, 933, 1348
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 6 cut(s) 150, 428, 730, 931, 1281, 1346
BstSFI CTRYAG 1 cut(s) 299
BstUI CGCG 2 cut(s) 634, 1085
BstV1I GCAGC 3 cut(s) 285, 1140, 1273
BstV2I GAAGAC 2 cut(s) 171, 1213
BstX2I RGATCY 6 cut(s) 19, 157, 340, 361, 806, 853
BstXI CCANNNNNNTGG 2 cut(s) 595, 798
BstYI RGATCY 6 cut(s) 19, 157, 340, 361, 806, 853
BsuRI GGCC 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 211, 1243
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 2 cut(s) 936, 1029
Cac8I GCNNGC 1 cut(s) 1067
CfoI GCGC 2 cut(s) 83, 1087
Cfr10I RCCGGY 1 cut(s) 1112
Cfr13I GGNCC 1 cut(s) 1099
CseI GACGC 2 cut(s) 1058, 1297
Csp6I GTAC 4 cut(s) 272, 994, 1252, 1270
CviAII CATG 9 cut(s) 52, 85, 370, 479, 539, 717, 792, 1233, 1243
CviQI GTAC 4 cut(s) 272, 994, 1252, 1270
DdeI CTNAG 2 cut(s) 1038, 1152
DpnI GATC 8 cut(s) 21, 159, 201, 342, 363, 376, 808, 855
DpnII GATC 8 cut(s) 19, 157, 199, 340, 361, 374, 806, 853
DriI GACNNNNNGTC 1 cut(s) 571
Eam1105I GACNNNNNGTC 1 cut(s) 571
Eco130I CCWWGG 3 cut(s) 15, 51, 1193
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 1099
Eco91I GGTNACC 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 1099
EcoO65I GGTNACC 1 cut(s) 259
EcoRII CCWGG 5 cut(s) 150, 428, 730, 931, 1346
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 3 cut(s) 15, 51, 1193
ErhI CCWWGG 3 cut(s) 15, 51, 1193
FaeI CATG 9 cut(s) 55, 88, 373, 482, 542, 720, 795, 1236, 1246
FalI AAGNNNNNCTT 2 cut(s) 1115, 1147
FaqI GGGAC 2 cut(s) 779, 1112
FatI CATG 9 cut(s) 51, 84, 369, 478, 538, 716, 791, 1232, 1242
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 4 cut(s) 299, 796, 1129, 1287
FokI GGATG 2 cut(s) 218, 1250
Fsp4HI GCNGC 4 cut(s) 299, 796, 1129, 1287
FspBI CTAG 1 cut(s) 74
GlaI GCGC 2 cut(s) 82, 1086
GluI GCNGC 4 cut(s) 299, 796, 1129, 1287
GsuI CTGGAG 2 cut(s) 146, 1109
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 1113, 1282
HgaI GACGC 2 cut(s) 1058, 1297
HhaI GCGC 2 cut(s) 83, 1087
Hin1I GRCGYC 2 cut(s) 246, 1323
Hin1II CATG 9 cut(s) 55, 88, 373, 482, 542, 720, 795, 1236, 1246
Hin6I GCGC 2 cut(s) 81, 1085
HinP1I GCGC 2 cut(s) 81, 1085
HincII GTYRAC 2 cut(s) 100, 694
HindII GTYRAC 2 cut(s) 100, 694
HinfI GANTC 4 cut(s) 725, 887, 911, 1058
HpaI GTTAAC 1 cut(s) 694
HpaII CCGG 2 cut(s) 1113, 1282
HphI GGTGA 5 cut(s) 271, 467, 509, 592, 720
Hpy166II GTNNAC 7 cut(s) 100, 409, 694, 996, 1188, 1252, 1272
Hpy188I TCNGA 7 cut(s) 24, 244, 502, 626, 916, 1057, 1303
Hpy188III TCNNGA 6 cut(s) 140, 161, 203, 974, 1073, 1225
Hpy8I GTNNAC 7 cut(s) 100, 409, 694, 996, 1188, 1252, 1272
Hpy99I CGWCG 2 cut(s) 577, 1313
HpyAV CCTTC 3 cut(s) 275, 571, 911
HpyCH4III ACNGT 1 cut(s) 1256
HpyCH4IV ACGT 3 cut(s) 246, 572, 1323
HpyCH4V TGCA 6 cut(s) 226, 301, 347, 389, 1007, 1289
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 539
HpyF3I CTNAG 2 cut(s) 1038, 1152
HpySE526I ACGT 3 cut(s) 246, 572, 1323
Hsp92I GRCGYC 2 cut(s) 246, 1323
Hsp92II CATG 9 cut(s) 55, 88, 373, 482, 542, 720, 795, 1236, 1246
HspAI GCGC 2 cut(s) 81, 1085
KspAI GTTAAC 1 cut(s) 694
Kzo9I GATC 8 cut(s) 19, 157, 199, 340, 361, 374, 806, 853
LmnI GCTCC 4 cut(s) 10, 922, 1039, 1090
Lsp1109I GCAGC 3 cut(s) 285, 1140, 1273
LweI GCATC 2 cut(s) 398, 1061
MaeI CTAG 1 cut(s) 74
MaeII ACGT 3 cut(s) 246, 572, 1323
MaeIII GTNAC 5 cut(s) 209, 247, 259, 908, 1256
MalI GATC 8 cut(s) 21, 159, 201, 342, 363, 376, 808, 855
MboI GATC 8 cut(s) 19, 157, 199, 340, 361, 374, 806, 853
MboII GAAGA 8 cut(s) 34, 167, 176, 195, 229, 639, 1168, 1213
MflI RGATCY 6 cut(s) 19, 157, 340, 361, 806, 853
MluCI AATT 8 cut(s) 590, 662, 668, 702, 751, 841, 986, 1043
MluI ACGCGT 1 cut(s) 632
MlyI GAGTC 2 cut(s) 896, 905
MmeI TCCRAC 3 cut(s) 604, 707, 811
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 4 cut(s) 474, 693, 701, 1375
MslI CAYNNNNRTG 2 cut(s) 254, 1247
MspI CCGG 2 cut(s) 1113, 1282
MspR9I CCNGG 6 cut(s) 152, 430, 732, 933, 1283, 1348
MvaI CCWGG 5 cut(s) 152, 430, 732, 933, 1348
MvnI CGCG 2 cut(s) 634, 1085
MwoI GCNNNNNNNGC 2 cut(s) 53, 539
NciI CCSGG 1 cut(s) 1283
NcoI CCATGG 1 cut(s) 51
NdeII GATC 8 cut(s) 19, 157, 199, 340, 361, 374, 806, 853
NlaIII CATG 9 cut(s) 55, 88, 373, 482, 542, 720, 795, 1236, 1246
NlaIV GGNNCC 7 cut(s) 6, 21, 363, 675, 855, 924, 1100
NmeAIII GCCGAG 1 cut(s) 874
NmuCI GTSAC 3 cut(s) 247, 259, 908
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 725, 1058
PflFI GACNNNGTC 1 cut(s) 1307
PflMI CCANNNNNTGG 2 cut(s) 452, 932
PkrI GCNGC 4 cut(s) 300, 797, 1130, 1288
PleI GAGTC 2 cut(s) 895, 905
PpsI GAGTC 2 cut(s) 895, 905
PpuMI RGGWCCY 1 cut(s) 1099
PsiI TTATAA 1 cut(s) 840
Psp5II RGGWCCY 1 cut(s) 1099
Psp6I CCWGG 5 cut(s) 150, 428, 730, 931, 1346
PspEI GGTNACC 1 cut(s) 259
PspGI CCWGG 5 cut(s) 150, 428, 730, 931, 1346
PspN4I GGNNCC 7 cut(s) 6, 21, 363, 675, 855, 924, 1100
PspPI GGNCC 1 cut(s) 1099
PspPPI RGGWCCY 1 cut(s) 1099
PstI CTGCAG 1 cut(s) 303
PsuI RGATCY 6 cut(s) 19, 157, 340, 361, 806, 853
PsyI GACNNNGTC 1 cut(s) 1307
RsaI GTAC 4 cut(s) 273, 995, 1253, 1271
RsaNI GTAC 4 cut(s) 272, 994, 1252, 1270
RseI CAYNNNNRTG 2 cut(s) 254, 1247
SaqAI TTAA 4 cut(s) 474, 693, 701, 1375
SatI GCNGC 4 cut(s) 299, 796, 1129, 1287
Sau3AI GATC 8 cut(s) 19, 157, 199, 340, 361, 374, 806, 853
Sau96I GGNCC 1 cut(s) 1099
ScaI AGTACT 1 cut(s) 273
SchI GAGTC 2 cut(s) 896, 905
ScrFI CCNGG 6 cut(s) 152, 430, 732, 933, 1283, 1348
SfaNI GCATC 2 cut(s) 398, 1061
SfcI CTRYAG 1 cut(s) 299
SinI GGWCC 1 cut(s) 1099
SmiMI CAYNNNNRTG 2 cut(s) 254, 1247
Sse9I AATT 8 cut(s) 590, 662, 668, 702, 751, 841, 986, 1043
SsiI CCGC 2 cut(s) 33, 795
SspI AATATT 1 cut(s) 864
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 6 cut(s) 150, 428, 730, 931, 1281, 1346
StyI CCWWGG 3 cut(s) 15, 51, 1193
TaaI ACNGT 1 cut(s) 1256
TaiI ACGT 3 cut(s) 249, 575, 1326
TaqI TCGA 5 cut(s) 162, 575, 723, 1165, 1311
TasI AATT 8 cut(s) 590, 662, 668, 702, 751, 841, 986, 1043
TatI WGTACW 3 cut(s) 271, 993, 1269
TauI GCSGC 1 cut(s) 798
TfiI GAWTC 2 cut(s) 725, 1058
Tru1I TTAA 4 cut(s) 474, 693, 701, 1375
Tru9I TTAA 4 cut(s) 474, 693, 701, 1375
TscAI CASTG 2 cut(s) 943, 1036
TseFI GTSAC 3 cut(s) 247, 259, 908
TseI GCWGC 3 cut(s) 298, 1128, 1286
Tsp45I GTSAC 3 cut(s) 247, 259, 908
TspDTI ATGAA 5 cut(s) 366, 388, 480, 834, 1230
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 943, 1036
Tth111I GACNNNGTC 1 cut(s) 1307
Van91I CCANNNNNTGG 2 cut(s) 452, 932
VpaK11BI GGWCC 1 cut(s) 1099
XapI RAATTY 3 cut(s) 590, 662, 986
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 1 cut(s) 74
ZraI GACGTC 2 cut(s) 247, 1324
ZrmI AGTACT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.