Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Reverse (-)

11050263 .. 11054757

Gene Structure 4495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG128200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGTTGCAGCATCTTTCTTTATATCTGTTTACTATGCCTTTCAACGCACCTGGAAGCCATTCAACCCCATTCTTGGTGAGACTTACGAAATGGTTAATCATGGTGGCATTACATTTGTAGCAGAACAGGTTAGTCATCACCCTCCTATGAGTGCTGCTCATGCAGAAAATGAGCATTTCATATATGACATAACTTCAAAGGTGAAAACCAAATTTCTAGGGAACTCGATTGATATCTATCCAGTTGGAAGGACACGTTTGACCCTCAAGAAGTCTGGTGTAGTCTTAGATTTGGCACCCCCGCCAACAAAAGTCAACAACTTAATTTTTGGAAGGACATGGGTTGATTCACCAGGAGATATGGTTTTGACCAATTTGACCACAGGGGATAAAGTTGTGCTCTATTTTCAACCATGCGGCTGGTTTGGAGCTGGTCGCTATGAAGTTGATGGATATGTTTATAATTCGACCGAGGAACCCAAGATATTGATGACTGGAAAGTGGAATGAGTCAATGAGTTATCAACCCTGTGACGCAGAAGGTGAACCACTTCCTGGCACTGAATTGAAAGAGTCTTGGAAAGTTGCTGAAGTTCCAGAAAATGACAAATTCCAGTACACATATTTTGCGCATAAAATAAACAGCTTCGACACTGCTCCTAAGAAGTTACTGGCATCAGATTCTCGGTTGCGTCCTGATAGGTTTGCACTGGAGCAAGGTGACATACCTAAAGCTGGCTTTGAAAAGAGCAGTCTGGAGGAGAGGCAGAGAGCTGAAAAGAAAAATAGAGAGGAAAAGGGTCATGAGTTCACTCCAAGATGGTTTGACAAAACAGATGAAATCTGTCCCACAACTTGGGATGACTTGCAAGTGTACCAATACAATGGCAAATACACCGAACATCGGGCCGCAATAGATGACTCGGACAGCGTTGAAGCAATTGACGTCAAATCAATAGAGTTCAACCCCTGGCAATACGAGAATTTGGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

331

Amino Acids

37.84

Weight (kDa)

5.24

Isoelectric Point (pI)

29.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	3 - 302	1.2e-90	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AatII	GACGTC	1 cut(s)	948
Acc16I	TGCGCA	1 cut(s)	630
AccB1I	GGYRCC	1 cut(s)	295
AccB7I	CCANNNNNTGG	2 cut(s)	554, 855
AciI	CCGC	3 cut(s)	302, 417, 909
AcsI	RAATTY	3 cut(s)	212, 608, 982
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	945
AfaI	GTAC	2 cut(s)	617, 875
AfiI	CCNNNNNNNGG	5 cut(s)	74, 554, 734, 855, 903
AflIII	ACRYGT	1 cut(s)	254
AgsI	TTSAA	8 cut(s)	44, 64, 198, 410, 568, 743, 935, 964
AjnI	CCWGG	4 cut(s)	50, 352, 553, 968
AluBI	AGCT	4 cut(s)	431, 645, 734, 773
AluI	AGCT	4 cut(s)	431, 645, 734, 773
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	906
ApeKI	GCWGC	3 cut(s)	8, 155, 989
ApoI	RAATTY	3 cut(s)	212, 608, 982
Asp700I	GAANNNNTTC	2 cut(s)	59, 549
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	1 cut(s)	906
AsuHPI	GGTGA	6 cut(s)	89, 131, 214, 342, 554, 731
BanI	GGYRCC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	20, 142, 976
BccI	CCATC	2 cut(s)	443, 813
BciT130I	CCWGG	4 cut(s)	52, 354, 555, 970
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	5 cut(s)	9, 156, 418, 909, 990
BlsI	GCNGC	5 cut(s)	10, 157, 419, 910, 991
Bme1390I	CCNGG	4 cut(s)	52, 354, 555, 970
BmgT120I	GGNCC	1 cut(s)	906
BmiI	GGNNCC	2 cut(s)	297, 477
BmrFI	CCNGG	4 cut(s)	52, 354, 555, 970
BmsI	GCATC	2 cut(s)	20, 683
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	2 cut(s)	731, 776
BpuEI	CTTGAG	1 cut(s)	251
BsaBI	GATNNNNATC	2 cut(s)	233, 237
BsaHI	GRCGYC	1 cut(s)	945
BsaJI	CCNNGG	2 cut(s)	471, 968
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 554, 734, 855, 903
Bse1I	ACTGG	5 cut(s)	242, 499, 613, 675, 714
Bse8I	GATNNNNATC	2 cut(s)	233, 237
BseBI	CCWGG	4 cut(s)	52, 354, 555, 970
BseDI	CCNNGG	2 cut(s)	471, 968
BseGI	GGATG	1 cut(s)	865
BseJI	GATNNNNATC	2 cut(s)	233, 237
BseLI	CCNNNNNNNGG	5 cut(s)	74, 554, 734, 855, 903
BseNI	ACTGG	5 cut(s)	242, 499, 613, 675, 714
BseRI	GAGGAG	1 cut(s)	773
BseXI	GCAGC	3 cut(s)	20, 142, 976
Bsh1285I	CGRYCG	1 cut(s)	471
BshFI	GGCC	1 cut(s)	908
BshNI	GGYRCC	1 cut(s)	295
BsiEI	CGRYCG	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	831
BslI	CCNNNNNNNGG	5 cut(s)	74, 554, 734, 855, 903
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	831
BsnI	GGCC	1 cut(s)	908
Bsp1286I	GDGCHC	1 cut(s)	402
BspACI	CCGC	3 cut(s)	302, 417, 909
BspANI	GGCC	1 cut(s)	908
BspHI	TCATGA	1 cut(s)	802
BspLI	GGNNCC	2 cut(s)	297, 477
BspT107I	GGYRCC	1 cut(s)	295
BsrI	ACTGG	5 cut(s)	242, 499, 613, 675, 714
BssECI	CCNNGG	2 cut(s)	471, 968
BssNI	GRCGYC	1 cut(s)	945
Bst2UI	CCWGG	4 cut(s)	52, 354, 555, 970
BstACI	GRCGYC	1 cut(s)	945
BstC8I	GCNNGC	1 cut(s)	736
BstDEI	CTNAG	2 cut(s)	286, 660
BstF5I	GGATG	1 cut(s)	865
BstHHI	GCGC	1 cut(s)	631
BstMAI	GTCTC	1 cut(s)	74
BstMCI	CGRYCG	1 cut(s)	471
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	4 cut(s)	52, 354, 555, 970
BstSCI	CCNGG	4 cut(s)	50, 352, 553, 968
BstV1I	GCAGC	3 cut(s)	20, 142, 976
BstXI	CCANNNNNNTGG	2 cut(s)	420, 884
BsuRI	GGCC	1 cut(s)	908
BtsCI	GGATG	1 cut(s)	865
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	558, 651, 707
Cac8I	GCNNGC	1 cut(s)	736
CciI	TCATGA	1 cut(s)	802
CfoI	GCGC	1 cut(s)	631
Cfr13I	GGNCC	1 cut(s)	906
CseI	GACGC	2 cut(s)	542, 680
Csp6I	GTAC	2 cut(s)	616, 874
CviAII	CATG	5 cut(s)	101, 161, 339, 414, 803
CviJI	RGCY	9 cut(s)	58, 420, 431, 645, 734, 738, 773, 908, 989
CviKI_1	RGCY	9 cut(s)	58, 420, 431, 645, 734, 738, 773, 908, 989
CviQI	GTAC	2 cut(s)	616, 874
DdeI	CTNAG	2 cut(s)	286, 660
Eco32I	GATATC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	609
EcoRII	CCWGG	4 cut(s)	50, 352, 553, 968
EcoRV	GATATC	1 cut(s)	235
FaeI	CATG	5 cut(s)	104, 164, 342, 417, 806
FaqI	GGGAC	1 cut(s)	831
FatI	CATG	5 cut(s)	100, 160, 338, 413, 802
FauI	CCCGC	1 cut(s)	309
Fnu4HI	GCNGC	5 cut(s)	9, 156, 418, 909, 990
FokI	GGATG	1 cut(s)	872
Fsp4HI	GCNGC	5 cut(s)	9, 156, 418, 909, 990
FspBI	CTAG	1 cut(s)	218
FspI	TGCGCA	1 cut(s)	630
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	5 cut(s)	9, 156, 418, 909, 990
GsuI	CTGGAG	2 cut(s)	731, 776
HaeIII	GGCC	1 cut(s)	908
HgaI	GACGC	2 cut(s)	542, 680
HhaI	GCGC	1 cut(s)	631
Hin1I	GRCGYC	1 cut(s)	945
Hin1II	CATG	5 cut(s)	104, 164, 342, 417, 806
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	5 cut(s)	347, 509, 572, 680, 920
HphI	GGTGA	6 cut(s)	89, 131, 214, 342, 554, 731
Hpy166II	GTNNAC	6 cut(s)	31, 316, 545, 618, 810, 874
Hpy188I	TCNGA	2 cut(s)	679, 925
Hpy188III	TCNNGA	5 cut(s)	268, 596, 695, 755, 803
Hpy8I	GTNNAC	6 cut(s)	31, 316, 545, 618, 810, 874
HpyAV	CCTTC	3 cut(s)	243, 327, 533
HpyCH4IV	ACGT	2 cut(s)	256, 945
HpyCH4V	TGCA	4 cut(s)	8, 164, 707, 868
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	286, 660
HpySE526I	ACGT	2 cut(s)	256, 945
Hsp92I	GRCGYC	1 cut(s)	945
Hsp92II	CATG	5 cut(s)	104, 164, 342, 417, 806
HspAI	GCGC	1 cut(s)	629
LmnI	GCTCC	3 cut(s)	428, 661, 712
Lsp1109I	GCAGC	3 cut(s)	20, 142, 976
LweI	GCATC	2 cut(s)	20, 683
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	2 cut(s)	256, 945
MaeIII	GTNAC	3 cut(s)	530, 666, 719
MfeI	CAATTG	1 cut(s)	939
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	8 cut(s)	212, 324, 373, 463, 563, 608, 939, 982
MlyI	GAGTC	3 cut(s)	518, 581, 914
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	6 cut(s)	153, 275, 466, 751, 756, 784
MroXI	GAANNNNTTC	2 cut(s)	59, 549
MseI	TTAA	2 cut(s)	96, 323
MspR9I	CCNGG	4 cut(s)	52, 354, 555, 970
MunI	CAATTG	1 cut(s)	939
MvaI	CCWGG	4 cut(s)	52, 354, 555, 970
MwoI	GCNNNNNNNGC	1 cut(s)	161
NlaIII	CATG	5 cut(s)	104, 164, 342, 417, 806
NlaIV	GGNNCC	2 cut(s)	297, 477
NmuCI	GTSAC	2 cut(s)	530, 719
NsbI	TGCGCA	1 cut(s)	630
PagI	TCATGA	1 cut(s)	802
PdmI	GAANNNNTTC	2 cut(s)	59, 549
PfeI	GAWTC	2 cut(s)	347, 680
PflMI	CCANNNNNTGG	2 cut(s)	554, 855
PkrI	GCNGC	5 cut(s)	10, 157, 419, 910, 991
PleI	GAGTC	3 cut(s)	517, 580, 914
PpsI	GAGTC	3 cut(s)	517, 580, 914
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	4 cut(s)	50, 352, 553, 968
PspGI	CCWGG	4 cut(s)	50, 352, 553, 968
PspN4I	GGNNCC	2 cut(s)	297, 477
PspPI	GGNCC	1 cut(s)	906
RsaI	GTAC	2 cut(s)	617, 875
RsaNI	GTAC	2 cut(s)	616, 874
SaqAI	TTAA	2 cut(s)	96, 323
SatI	GCNGC	5 cut(s)	9, 156, 418, 909, 990
Sau96I	GGNCC	1 cut(s)	906
SchI	GAGTC	3 cut(s)	518, 581, 914
ScrFI	CCNGG	4 cut(s)	52, 354, 555, 970
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	2 cut(s)	20, 683
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	8 cut(s)	212, 324, 373, 463, 563, 608, 939, 982
SsiI	CCGC	3 cut(s)	302, 417, 909
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	4 cut(s)	50, 352, 553, 968
TaiI	ACGT	2 cut(s)	259, 948
TaqI	TCGA	3 cut(s)	227, 467, 648
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	8 cut(s)	212, 324, 373, 463, 563, 608, 939, 982
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	2 cut(s)	420, 911
TfiI	GAWTC	2 cut(s)	347, 680
Tru1I	TTAA	2 cut(s)	96, 323
Tru9I	TTAA	2 cut(s)	96, 323
TscAI	CASTG	3 cut(s)	565, 658, 714
TseFI	GTSAC	2 cut(s)	530, 719
TseI	GCWGC	3 cut(s)	8, 155, 989
Tsp45I	GTSAC	2 cut(s)	530, 719
TspDTI	ATGAA	3 cut(s)	169, 456, 852
TspRI	CASTG	3 cut(s)	565, 658, 714
Van91I	CCANNNNNTGG	2 cut(s)	554, 855
XapI	RAATTY	3 cut(s)	212, 608, 982
XmnI	GAANNNNTTC	2 cut(s)	59, 549
XspI	CTAG	1 cut(s)	218
ZraI	GACGTC	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.