Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Reverse (-)

8208768 .. 8213661

Gene Structure 4894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13550.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGCGCCCAACGATCCCAAGCAAGGCGGCGGAGGCTTCTTCGCCTCCATAGCCTCCACTTTCAGCGCCGTCACCAAATCCGTCAACGGATTGGTTGGATACGAAGGCCTGGAGGTTATCAATCCGGATGGAGGCACTGATGATGTTCATGAGGAAGCCAGTAAAGGAAGGTGGAAGCAGGAGGATAGGGATGGTTACTGGAAGGAAATGCGGAAGTATGTAGGTGCTGATGTTACATCAATGGTGACCCTTCCAGTTCTTATTTTTGAGCCAATGACTATGATACAGAAAATGGCAGAGTTGATGGAATATTCCCATCTGTTAGATATGGCAGATGAATGTGAGGATCCATACATGCAAATGGTTTACTCTGCATCTTTCTTTATATCTGTTTACTATGCCTTTCAACGCACTTGGAAGCCATTCAACCCCATTCTTGGTGAGACTTATGAAATGGTTAATCATGGTGGCATTACATTTGTAGCAGAACAGGTTAGTCATCACCCTCCTATGAGTGCTGCTCACGCAGAAAATGAGCATTTTATATATGACATTACGTCAAAGGTGAAAACCAAATTCTTAGGGAACTCGATTGATATCTATCCAGTTGGAAGGACACGTTTGACCCTCAAAAAGTCTGGTGTAGTCTTGGATTTGGCACCCCCACCAACAAAAGTCAACAACTTAATTTTTGGAAGGACATGGGTTGATTCACCAGGAGATATGGTTTTGACCAATTTGACTACAGGGGATAAAGTGATTCTATATTTTCAACCATGCGGCTGGTTTGGAGCTGGTCGCTATGAAGTTGATGGATATGTTTATAATTCTACTGAGGAACCCAAGATATTGATGACTGGAAAGTGGAATGAGGCCATGAGTTATCAACCCTGTGACGCAGAAGGTGAACCACTTCCTGGCACTGAACTGAAAGAGTCTTGGAGAGTTGCTAAAGTTCCAGAAAATGACAAATTCCAGTACACATATTTTGCACATAAAATAAACAGCTTCGACACTGCTCCTAAGAAGTTACTGGCGTCAGATTCTCGGTTGCGTCCTGATAGATACGCGCTGGAGCAGGGAGATTTAACTAAAGCTGGCTTTGAAAAGAGCAGTCTGGAGGAGAGGCAGAGAGCTGAAAAGAAAAATAGAGAAGAAAAGGGTCATGAGTTCACTCCAAGATGGTTTGACAAAACAGATGAGATCTGTCCCACAACGTGGGATGACTTGCAAGTTTACCAATACAATGGCAAATACACCGAACACCGGGCTGCGATAGATGACTCGGACAGCGTTGAAGCAATTGACGTCAAATCAATAGAGTTCAACCCCTGGCAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

448

Amino Acids

50.89

Weight (kDa)

5.01

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	1 - 354	7.2e-111	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	825
AatII	GACGTC	1 cut(s)	1311
AccB1I	GGYRCC	2 cut(s)	4, 658
AccB7I	CCANNNNNTGG	2 cut(s)	917, 1218
AccII	CGCG	1 cut(s)	1070
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	4 cut(s)	27, 30, 211, 780
AclWI	GGATC	3 cut(s)	8, 341, 354
AcsI	RAATTY	2 cut(s)	575, 971
AcyI	GRCGYC	3 cut(s)	5, 1037, 1308
AdeI	CACNNNGTG	1 cut(s)	1218
AfaI	GTAC	1 cut(s)	980
AfiI	CCNNNNNNNGG	6 cut(s)	23, 131, 437, 917, 1218, 1266
AflIII	ACRYGT	1 cut(s)	617
AgsI	TTSAA	6 cut(s)	407, 427, 773, 1106, 1298, 1327
AhdI	GACNNNNNGTC	1 cut(s)	556
AjnI	CCWGG	4 cut(s)	108, 715, 916, 1331
AluBI	AGCT	4 cut(s)	794, 1008, 1097, 1136
AluI	AGCT	4 cut(s)	794, 1008, 1097, 1136
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	3 cut(s)	8, 341, 354
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	2 cut(s)	106, 873
ApeKI	GCWGC	2 cut(s)	518, 1271
ApoI	RAATTY	2 cut(s)	575, 971
Asp700I	GAANNNNTTC	2 cut(s)	422, 912
AspLEI	GCGC	3 cut(s)	7, 68, 1072
AsuC2I	CCSGG	1 cut(s)	1268
AsuHPI	GGTGA	7 cut(s)	64, 256, 452, 494, 577, 705, 917
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	2 cut(s)	4, 658
BbvI	GCAGC	2 cut(s)	505, 1258
BccI	CCATC	6 cut(s)	122, 185, 298, 324, 806, 1176
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	4 cut(s)	110, 717, 918, 1333
BciVI	GTATCC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	1268
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	1342
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	2 cut(s)	8, 69
BfuI	GTATCC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	1203
BisI	GCNGC	4 cut(s)	28, 519, 781, 1272
BlsI	GCNGC	4 cut(s)	29, 520, 782, 1273
Bme1390I	CCNGG	5 cut(s)	110, 717, 918, 1268, 1333
BmeRI	GACNNNNNGTC	1 cut(s)	556
BmiI	GGNNCC	4 cut(s)	6, 348, 660, 840
BmrFI	CCNGG	5 cut(s)	110, 717, 918, 1268, 1333
BmsI	GCATC	1 cut(s)	383
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
BpmI	CTGGAG	3 cut(s)	131, 1094, 1139
BpuMI	CCSGG	1 cut(s)	1268
BsaBI	GATNNNNATC	2 cut(s)	596, 600
BsaHI	GRCGYC	3 cut(s)	5, 1037, 1308
BsaJI	CCNNGG	1 cut(s)	1331
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	6 cut(s)	23, 131, 437, 917, 1218, 1266
Bse1I	ACTGG	7 cut(s)	159, 203, 254, 605, 862, 976, 1038
Bse8I	GATNNNNATC	2 cut(s)	596, 600
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	4 cut(s)	110, 717, 918, 1333
BseDI	CCNNGG	1 cut(s)	1331
BseGI	GGATG	3 cut(s)	133, 196, 1228
BseJI	GATNNNNATC	2 cut(s)	596, 600
BseLI	CCNNNNNNNGG	6 cut(s)	23, 131, 437, 917, 1218, 1266
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	7 cut(s)	159, 203, 254, 605, 862, 976, 1038
BseRI	GAGGAG	1 cut(s)	1136
BseXI	GCAGC	2 cut(s)	505, 1258
Bsh1236I	CGCG	1 cut(s)	1070
BshFI	GGCC	2 cut(s)	108, 875
BshNI	GGYRCC	2 cut(s)	4, 658
BsiSI	CCGG	2 cut(s)	125, 1267
BslFI	GGGAC	1 cut(s)	1194
BslI	CCNNNNNNNGG	6 cut(s)	23, 131, 437, 917, 1218, 1266
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	1194
BsnI	GGCC	2 cut(s)	108, 875
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	13, 346, 1203
BspACI	CCGC	4 cut(s)	27, 30, 211, 780
BspANI	GGCC	2 cut(s)	108, 875
BspCNI	CTCAG	1 cut(s)	826
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	1070
BspHI	TCATGA	2 cut(s)	148, 1165
BspLI	GGNNCC	4 cut(s)	6, 348, 660, 840
BspPI	GGATC	3 cut(s)	8, 341, 354
BspT107I	GGYRCC	2 cut(s)	4, 658
BsrI	ACTGG	7 cut(s)	159, 203, 254, 605, 862, 976, 1038
BssECI	CCNNGG	1 cut(s)	1331
BssMI	GATC	3 cut(s)	13, 346, 1203
BssNI	GRCGYC	3 cut(s)	5, 1037, 1308
Bst2UI	CCWGG	4 cut(s)	110, 717, 918, 1333
BstACI	GRCGYC	3 cut(s)	5, 1037, 1308
BstC8I	GCNNGC	1 cut(s)	1099
BstDEI	CTNAG	3 cut(s)	580, 834, 1023
BstEII	GGTNACC	1 cut(s)	244
BstF5I	GGATG	3 cut(s)	133, 196, 1228
BstFNI	CGCG	1 cut(s)	1070
BstH2I	RGCGCY	2 cut(s)	8, 69
BstHHI	GCGC	3 cut(s)	7, 68, 1072
BstKTI	GATC	3 cut(s)	16, 349, 1206
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	3 cut(s)	13, 346, 1203
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 50, 524
BstNI	CCWGG	4 cut(s)	110, 717, 918, 1333
BstNSI	RCATGY	1 cut(s)	358
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	5 cut(s)	108, 715, 916, 1266, 1331
BstSFI	CTRYAG	1 cut(s)	744
BstUI	CGCG	1 cut(s)	1070
BstV1I	GCAGC	2 cut(s)	505, 1258
BstX2I	RGATCY	2 cut(s)	346, 1203
BstXI	CCANNNNNNTGG	2 cut(s)	783, 1247
BstYI	RGATCY	2 cut(s)	346, 1203
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	108, 875
BtsCI	GGATG	3 cut(s)	133, 196, 1228
BtsI	GCAGTG	1 cut(s)	1014
BtsIMutI	CAGTG	3 cut(s)	135, 921, 1014
Cac8I	GCNNGC	1 cut(s)	1099
CciI	TCATGA	2 cut(s)	148, 1165
CfoI	GCGC	3 cut(s)	7, 68, 1072
CseI	GACGC	3 cut(s)	905, 1026, 1043
Csp6I	GTAC	1 cut(s)	979
CviAII	CATG	7 cut(s)	149, 355, 464, 702, 777, 877, 1166
CviQI	GTAC	1 cut(s)	979
DdeI	CTNAG	3 cut(s)	580, 834, 1023
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	15, 348, 1205
DpnII	GATC	3 cut(s)	13, 346, 1203
DraIII	CACNNNGTG	1 cut(s)	1218
DriI	GACNNNNNGTC	1 cut(s)	556
Eam1105I	GACNNNNNGTC	1 cut(s)	556
EciI	GGCGGA	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	598
Eco91I	GGTNACC	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	244
EcoRII	CCWGG	4 cut(s)	108, 715, 916, 1331
EcoRV	GATATC	1 cut(s)	598
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	7 cut(s)	152, 358, 467, 705, 780, 880, 1169
FaqI	GGGAC	1 cut(s)	1194
FatI	CATG	7 cut(s)	148, 354, 463, 701, 776, 876, 1165
Fnu4HI	GCNGC	4 cut(s)	28, 519, 781, 1272
FokI	GGATG	3 cut(s)	140, 203, 1235
Fsp4HI	GCNGC	4 cut(s)	28, 519, 781, 1272
FspBI	CTAG	1 cut(s)	1342
GlaI	GCGC	3 cut(s)	6, 67, 1071
GluI	GCNGC	4 cut(s)	28, 519, 781, 1272
GsuI	CTGGAG	3 cut(s)	131, 1094, 1139
HaeII	RGCGCY	2 cut(s)	8, 69
HaeIII	GGCC	2 cut(s)	108, 875
HapII	CCGG	2 cut(s)	125, 1267
HgaI	GACGC	3 cut(s)	905, 1026, 1043
HhaI	GCGC	3 cut(s)	7, 68, 1072
Hin1I	GRCGYC	3 cut(s)	5, 1037, 1308
Hin1II	CATG	7 cut(s)	152, 358, 467, 705, 780, 880, 1169
Hin6I	GCGC	3 cut(s)	5, 66, 1070
HinP1I	GCGC	3 cut(s)	5, 66, 1070
HincII	GTYRAC	2 cut(s)	85, 679
HindII	GTYRAC	2 cut(s)	85, 679
HinfI	GANTC	5 cut(s)	710, 760, 935, 1043, 1283
HpaII	CCGG	2 cut(s)	125, 1267
HphI	GGTGA	7 cut(s)	64, 256, 452, 494, 577, 705, 917
Hpy166II	GTNNAC	8 cut(s)	85, 367, 394, 679, 908, 981, 1173, 1237
Hpy188I	TCNGA	2 cut(s)	1042, 1288
Hpy188III	TCNNGA	6 cut(s)	125, 149, 959, 1058, 1118, 1166
Hpy8I	GTNNAC	8 cut(s)	85, 367, 394, 679, 908, 981, 1173, 1237
HpyAV	CCTTC	7 cut(s)	98, 162, 196, 260, 606, 690, 896
HpyCH4IV	ACGT	4 cut(s)	557, 619, 1217, 1308
HpyCH4V	TGCA	4 cut(s)	358, 374, 992, 1231
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 50, 524
HpyF3I	CTNAG	3 cut(s)	580, 834, 1023
HpySE526I	ACGT	4 cut(s)	557, 619, 1217, 1308
Hsp92I	GRCGYC	3 cut(s)	5, 1037, 1308
Hsp92II	CATG	7 cut(s)	152, 358, 467, 705, 780, 880, 1169
HspAI	GCGC	3 cut(s)	5, 66, 1070
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	13, 346, 1203
LmnI	GCTCC	3 cut(s)	791, 1024, 1075
Lsp1109I	GCAGC	2 cut(s)	505, 1258
LweI	GCATC	1 cut(s)	383
MaeI	CTAG	1 cut(s)	1342
MaeII	ACGT	4 cut(s)	557, 619, 1217, 1308
MaeIII	GTNAC	6 cut(s)	70, 194, 232, 244, 893, 1029
MalI	GATC	3 cut(s)	15, 348, 1205
MboI	GATC	3 cut(s)	13, 346, 1203
MboII	GAAGA	2 cut(s)	31, 1166
MfeI	CAATTG	1 cut(s)	1302
MflI	RGATCY	2 cut(s)	346, 1203
MluCI	AATT	6 cut(s)	575, 687, 736, 826, 971, 1302
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	944, 1277
MmeI	TCCRAC	2 cut(s)	76, 589
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	2 cut(s)	422, 912
MseI	TTAA	3 cut(s)	459, 686, 1088
MslI	CAYNNNNRTG	1 cut(s)	359
MspI	CCGG	2 cut(s)	125, 1267
MspR9I	CCNGG	5 cut(s)	110, 717, 918, 1268, 1333
MunI	CAATTG	1 cut(s)	1302
MvaI	CCWGG	4 cut(s)	110, 717, 918, 1333
MvnI	CGCG	1 cut(s)	1070
MwoI	GCNNNNNNNGC	3 cut(s)	33, 50, 524
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	1268
NdeII	GATC	3 cut(s)	13, 346, 1203
NlaIII	CATG	7 cut(s)	152, 358, 467, 705, 780, 880, 1169
NlaIV	GGNNCC	4 cut(s)	6, 348, 660, 840
NmuCI	GTSAC	3 cut(s)	70, 244, 893
NspI	RCATGY	1 cut(s)	358
PagI	TCATGA	2 cut(s)	148, 1165
PceI	AGGCCT	1 cut(s)	108
PdmI	GAANNNNTTC	2 cut(s)	422, 912
PfeI	GAWTC	3 cut(s)	710, 760, 1043
PflMI	CCANNNNNTGG	2 cut(s)	917, 1218
PkrI	GCNGC	4 cut(s)	29, 520, 782, 1273
PleI	GAGTC	2 cut(s)	943, 1277
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	943, 1277
PsiI	TTATAA	1 cut(s)	825
Psp6I	CCWGG	4 cut(s)	108, 715, 916, 1331
PspEI	GGTNACC	1 cut(s)	244
PspGI	CCWGG	4 cut(s)	108, 715, 916, 1331
PspN4I	GGNNCC	4 cut(s)	6, 348, 660, 840
PsuI	RGATCY	2 cut(s)	346, 1203
RsaI	GTAC	1 cut(s)	980
RsaNI	GTAC	1 cut(s)	979
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	459, 686, 1088
SatI	GCNGC	4 cut(s)	28, 519, 781, 1272
Sau3AI	GATC	3 cut(s)	13, 346, 1203
SchI	GAGTC	2 cut(s)	944, 1277
ScrFI	CCNGG	5 cut(s)	110, 717, 918, 1268, 1333
SfaNI	GCATC	1 cut(s)	383
SfcI	CTRYAG	1 cut(s)	744
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	6 cut(s)	575, 687, 736, 826, 971, 1302
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	4 cut(s)	27, 30, 211, 780
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	311
SspMI	CTAG	1 cut(s)	1342
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	5 cut(s)	108, 715, 916, 1266, 1331
TaiI	ACGT	4 cut(s)	560, 622, 1220, 1311
TaqI	TCGA	2 cut(s)	590, 1011
TasI	AATT	6 cut(s)	575, 687, 736, 826, 971, 1302
TatI	WGTACW	1 cut(s)	978
TauI	GCSGC	2 cut(s)	30, 783
TfiI	GAWTC	3 cut(s)	710, 760, 1043
Tru1I	TTAA	3 cut(s)	459, 686, 1088
Tru9I	TTAA	3 cut(s)	459, 686, 1088
TscAI	CASTG	3 cut(s)	142, 928, 1021
TseFI	GTSAC	3 cut(s)	70, 244, 893
TseI	GCWGC	2 cut(s)	518, 1271
Tsp45I	GTSAC	3 cut(s)	70, 244, 893
TspDTI	ATGAA	4 cut(s)	137, 351, 465, 819
TspGWI	ACGGA	2 cut(s)	70, 102
TspRI	CASTG	3 cut(s)	142, 928, 1021
Van91I	CCANNNNNTGG	2 cut(s)	917, 1218
XapI	RAATTY	2 cut(s)	575, 971
XceI	RCATGY	1 cut(s)	358
XmnI	GAANNNNTTC	2 cut(s)	422, 912
XspI	CTAG	1 cut(s)	1342
ZraI	GACGTC	1 cut(s)	1309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.