Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Reverse (-)

12661480 .. 12666737

Gene Structure 5258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG149500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGCGCCCAAGGATCCCAAGCAAGGCGGAGGCTTCTTCGCCTCCATAGCTTCCACTTTCAGCGCCGTCACCAAATCCGTCAACGGATTAGTGGGGTACGAGGGCCTGGAGGTCATCAATCCAGATGGAGGCACGGATGATGTTCATGAAGAAGCCAGTAAAGGAAGATGGAAGCAGGAGGATCGGGATGGTTACTGGAAGGTAATGCAGAAGTATGTAGGTGCTGACGTCACATCAATGGTGACCCTTCCCGTTCTTATTTTTGAGCCAATGACTATGCTACAGAAAATGGCAGAGTTGATGGAATACTCCCATCTGTTAGATCTGGCAGATGAATGTGAGGATCCATACATGCAATTGGTATATTCTGCATCTTTCTTTATATCTGTTTACTATGCCTTTCAACGCACCTGGAAGCCATTCAACCCCATTCTTGGTGAGACTTACGAAATGGTTAATCATGGTGGCATTACATTTGTAGCAGAACAGGTTAGTCATCACCCTCCTATGAGTGCTGCTCATGCAGAAAATGAGCATTTCATATATGACATAACTTCAAAGGTGAAAACCAAATTTCTAGGGAACTCGATTGATATCTATCCAGTTGGAAGGACACGTTTGACCCTCAAGAAGTCTGGTGTAGTCTTAGATTTGGCACCCCCGCCAACAAAAGTCAACAACTTAATTTTTGGAAGGACATGGGTTGATTCACCAGGAGATATGGTTTTGACCAATTTGACCACAGGGGATAAAGTTGTGCTCTATTTTCAACCATGCGGCTGGTTTGGAGCTGGTCGCTATGAAGTTGATGGATATGTTTATAATTCGACCGAGGAACCCAAGATATTGATGACTGGAAAGTGGAATGAGTCAATGAGTTATCAACCCTGTGACGCAGAAGGTGAACCACTTCCTGGCACTGAATTGAAAGAGTCTTGGAAAGTTGCTGAAGTTCCAGAAAATGACAAATTCCAGTACACATATTTTGCGCATAAAATAAACAGCTTCGACACTGCTCCTAAGAAGTTACTGGCATCAGATTCTCGGTTGCGTCCTGATAGGTTTGCACTGGAGCAAGGTGACATACCTAAAGCTGGCTTTGAAAAGAGCAGGTCCCCCATCTCTCTCTCTCTCTTTCTCACACACACACACACACACACACACACAACACTACAAACACAAACCAACACATGCTACAATAAGAAAATAAACAGAATTCATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

408

Amino Acids

45.97

Weight (kDa)

5.74

Isoelectric Point (pI)

30.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	65 - 371	1.1e-95	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	822
AatII	GACGTC	1 cut(s)	231
Acc16I	TGCGCA	1 cut(s)	990
Acc36I	ACCTGC	1 cut(s)	1101
AccB1I	GGYRCC	2 cut(s)	4, 655
AccB7I	CCANNNNNTGG	1 cut(s)	914
AciI	CCGC	3 cut(s)	27, 662, 777
AclWI	GGATC	5 cut(s)	8, 21, 189, 338, 351
AcsI	RAATTY	3 cut(s)	572, 968, 1215
AcuI	CTGAAG	1 cut(s)	969
AcyI	GRCGYC	2 cut(s)	5, 228
AfaI	GTAC	2 cut(s)	98, 977
AfiI	CCNNNNNNNGG	5 cut(s)	23, 128, 434, 914, 1094
AflIII	ACRYGT	1 cut(s)	614
AgsI	TTSAA	6 cut(s)	404, 424, 558, 770, 928, 1103
AjnI	CCWGG	4 cut(s)	105, 410, 712, 913
AluBI	AGCT	4 cut(s)	50, 791, 1005, 1094
AluI	AGCT	4 cut(s)	50, 791, 1005, 1094
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	5 cut(s)	8, 21, 189, 338, 351
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	3 cut(s)	572, 968, 1215
Asp700I	GAANNNNTTC	2 cut(s)	419, 909
AspLEI	GCGC	3 cut(s)	7, 65, 991
AspS9I	GGNCC	2 cut(s)	103, 1113
AsuHPI	GGTGA	8 cut(s)	61, 253, 449, 491, 574, 702, 914, 1091
AvaII	GGWCC	1 cut(s)	1113
BamHI	GGATCC	2 cut(s)	13, 343
BanI	GGYRCC	2 cut(s)	4, 655
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	7 cut(s)	119, 162, 182, 295, 321, 803, 1127
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	4 cut(s)	107, 412, 714, 915
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	1 cut(s)	281
BfoI	RGCGCY	2 cut(s)	8, 66
BfuAI	ACCTGC	1 cut(s)	1101
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	2 cut(s)	516, 778
BlsI	GCNGC	2 cut(s)	517, 779
Bme1390I	CCNGG	4 cut(s)	107, 412, 714, 915
Bme18I	GGWCC	1 cut(s)	1113
BmgT120I	GGNCC	2 cut(s)	103, 1113
BmiI	GGNNCC	6 cut(s)	6, 15, 345, 657, 837, 1115
BmrFI	CCNGG	4 cut(s)	107, 412, 714, 915
BmsI	GCATC	2 cut(s)	380, 1043
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	2 cut(s)	128, 1091
BpuEI	CTTGAG	1 cut(s)	611
BsaBI	GATNNNNATC	2 cut(s)	593, 597
BsaHI	GRCGYC	2 cut(s)	5, 228
BsaJI	CCNNGG	2 cut(s)	9, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 128, 434, 914, 1094
Bse1I	ACTGG	7 cut(s)	156, 200, 602, 859, 973, 1035, 1074
Bse8I	GATNNNNATC	2 cut(s)	593, 597
BseBI	CCWGG	4 cut(s)	107, 412, 714, 915
BseDI	CCNNGG	2 cut(s)	9, 831
BseGI	GGATG	2 cut(s)	142, 193
BseJI	GATNNNNATC	2 cut(s)	593, 597
BseLI	CCNNNNNNNGG	5 cut(s)	23, 128, 434, 914, 1094
BseNI	ACTGG	7 cut(s)	156, 200, 602, 859, 973, 1035, 1074
BseXI	GCAGC	1 cut(s)	502
Bsh1285I	CGRYCG	1 cut(s)	831
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	2 cut(s)	4, 655
BsiEI	CGRYCG	1 cut(s)	831
BsiHKAI	GWGCWC	1 cut(s)	762
BslFI	GGGAC	1 cut(s)	1099
BslI	CCNNNNNNNGG	5 cut(s)	23, 128, 434, 914, 1094
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	1099
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp143I	GATC	4 cut(s)	13, 181, 322, 343
BspACI	CCGC	3 cut(s)	27, 662, 777
BspANI	GGCC	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	6 cut(s)	6, 15, 345, 657, 837, 1115
BspMI	ACCTGC	1 cut(s)	1101
BspPI	GGATC	5 cut(s)	8, 21, 189, 338, 351
BspT107I	GGYRCC	2 cut(s)	4, 655
BsrI	ACTGG	7 cut(s)	156, 200, 602, 859, 973, 1035, 1074
BssECI	CCNNGG	2 cut(s)	9, 831
BssMI	GATC	4 cut(s)	13, 181, 322, 343
BssNI	GRCGYC	2 cut(s)	5, 228
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	4 cut(s)	107, 412, 714, 915
BstACI	GRCGYC	2 cut(s)	5, 228
BstC8I	GCNNGC	1 cut(s)	1096
BstDEI	CTNAG	2 cut(s)	646, 1020
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	142, 193
BstH2I	RGCGCY	2 cut(s)	8, 66
BstHHI	GCGC	3 cut(s)	7, 65, 991
BstKTI	GATC	4 cut(s)	16, 184, 325, 346
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	4 cut(s)	13, 181, 322, 343
BstMCI	CGRYCG	1 cut(s)	831
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 521
BstNI	CCWGG	4 cut(s)	107, 412, 714, 915
BstNSI	RCATGY	2 cut(s)	355, 1194
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	4 cut(s)	105, 410, 712, 913
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	3 cut(s)	13, 322, 343
BstXI	CCANNNNNNTGG	1 cut(s)	780
BstYI	RGATCY	3 cut(s)	13, 322, 343
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	142, 193
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	3 cut(s)	918, 1011, 1067
BveI	ACCTGC	1 cut(s)	1101
Cac8I	GCNNGC	1 cut(s)	1096
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	3 cut(s)	7, 65, 991
Cfr13I	GGNCC	2 cut(s)	103, 1113
CseI	GACGC	2 cut(s)	902, 1040
Csp6I	GTAC	2 cut(s)	97, 976
CviAII	CATG	7 cut(s)	146, 352, 461, 521, 699, 774, 1191
CviQI	GTAC	2 cut(s)	97, 976
DdeI	CTNAG	2 cut(s)	646, 1020
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	15, 183, 324, 345
DpnII	GATC	4 cut(s)	13, 181, 322, 343
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	1113
Eco57I	CTGAAG	1 cut(s)	969
Eco91I	GGTNACC	1 cut(s)	241
EcoO109I	RGGNCCY	2 cut(s)	103, 1113
EcoO65I	GGTNACC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	1215
EcoRII	CCWGG	4 cut(s)	105, 410, 712, 913
EcoRV	GATATC	1 cut(s)	595
EcoT14I	CCWWGG	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	7 cut(s)	149, 355, 464, 524, 702, 777, 1194
FaqI	GGGAC	1 cut(s)	1099
FatI	CATG	7 cut(s)	145, 351, 460, 520, 698, 773, 1190
FauI	CCCGC	1 cut(s)	669
Fnu4HI	GCNGC	2 cut(s)	516, 778
FokI	GGATG	2 cut(s)	149, 200
Fsp4HI	GCNGC	2 cut(s)	516, 778
FspBI	CTAG	1 cut(s)	578
FspI	TGCGCA	1 cut(s)	990
GlaI	GCGC	3 cut(s)	6, 64, 990
GluI	GCNGC	2 cut(s)	516, 778
GsuI	CTGGAG	2 cut(s)	128, 1091
HaeII	RGCGCY	2 cut(s)	8, 66
HaeIII	GGCC	1 cut(s)	105
HgaI	GACGC	2 cut(s)	902, 1040
HhaI	GCGC	3 cut(s)	7, 65, 991
Hin1I	GRCGYC	2 cut(s)	5, 228
Hin1II	CATG	7 cut(s)	149, 355, 464, 524, 702, 777, 1194
Hin6I	GCGC	3 cut(s)	5, 63, 989
HinP1I	GCGC	3 cut(s)	5, 63, 989
HincII	GTYRAC	2 cut(s)	82, 676
HindII	GTYRAC	2 cut(s)	82, 676
HinfI	GANTC	4 cut(s)	707, 869, 932, 1040
HphI	GGTGA	8 cut(s)	61, 253, 449, 491, 574, 702, 914, 1091
Hpy166II	GTNNAC	5 cut(s)	82, 391, 676, 905, 978
Hpy188I	TCNGA	1 cut(s)	1039
Hpy188III	TCNNGA	6 cut(s)	122, 146, 185, 628, 956, 1055
Hpy8I	GTNNAC	5 cut(s)	82, 391, 676, 905, 978
HpyAV	CCTTC	5 cut(s)	193, 257, 603, 687, 893
HpyCH4IV	ACGT	2 cut(s)	228, 616
HpyCH4V	TGCA	5 cut(s)	208, 355, 371, 524, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 521
HpyF3I	CTNAG	2 cut(s)	646, 1020
HpySE526I	ACGT	2 cut(s)	228, 616
Hsp92I	GRCGYC	2 cut(s)	5, 228
Hsp92II	CATG	7 cut(s)	149, 355, 464, 524, 702, 777, 1194
HspAI	GCGC	3 cut(s)	5, 63, 989
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	13, 181, 322, 343
LmnI	GCTCC	3 cut(s)	788, 1021, 1072
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	2 cut(s)	380, 1043
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	2 cut(s)	228, 616
MaeIII	GTNAC	7 cut(s)	67, 191, 229, 241, 890, 1026, 1079
MalI	GATC	4 cut(s)	15, 183, 324, 345
MboI	GATC	4 cut(s)	13, 181, 322, 343
MboII	GAAGA	3 cut(s)	28, 161, 177
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	3 cut(s)	13, 322, 343
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	8 cut(s)	356, 572, 684, 733, 823, 923, 968, 1215
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	878, 941
MmeI	TCCRAC	1 cut(s)	586
MroXI	GAANNNNTTC	2 cut(s)	419, 909
MseI	TTAA	3 cut(s)	456, 683, 1225
MslI	CAYNNNNRTG	1 cut(s)	236
MspR9I	CCNGG	4 cut(s)	107, 412, 714, 915
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	4 cut(s)	107, 412, 714, 915
MwoI	GCNNNNNNNGC	2 cut(s)	47, 521
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	4 cut(s)	13, 181, 322, 343
NlaIII	CATG	7 cut(s)	149, 355, 464, 524, 702, 777, 1194
NlaIV	GGNNCC	6 cut(s)	6, 15, 345, 657, 837, 1115
NmuCI	GTSAC	5 cut(s)	67, 229, 241, 890, 1079
NsbI	TGCGCA	1 cut(s)	990
NspI	RCATGY	2 cut(s)	355, 1194
PagI	TCATGA	1 cut(s)	145
PdmI	GAANNNNTTC	2 cut(s)	419, 909
PfeI	GAWTC	2 cut(s)	707, 1040
PflMI	CCANNNNNTGG	1 cut(s)	914
PkrI	GCNGC	2 cut(s)	517, 779
PleI	GAGTC	2 cut(s)	877, 940
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	877, 940
PpuMI	RGGWCCY	1 cut(s)	1113
PsiI	TTATAA	1 cut(s)	822
Psp5II	RGGWCCY	1 cut(s)	1113
Psp6I	CCWGG	4 cut(s)	105, 410, 712, 913
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	4 cut(s)	105, 410, 712, 913
PspN4I	GGNNCC	6 cut(s)	6, 15, 345, 657, 837, 1115
PspPI	GGNCC	2 cut(s)	103, 1113
PspPPI	RGGWCCY	1 cut(s)	1113
PsuI	RGATCY	3 cut(s)	13, 322, 343
RsaI	GTAC	2 cut(s)	98, 977
RsaNI	GTAC	2 cut(s)	97, 976
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	456, 683, 1225
SatI	GCNGC	2 cut(s)	516, 778
Sau3AI	GATC	4 cut(s)	13, 181, 322, 343
Sau96I	GGNCC	2 cut(s)	103, 1113
SchI	GAGTC	2 cut(s)	878, 941
ScrFI	CCNGG	4 cut(s)	107, 412, 714, 915
SduI	GDGCHC	1 cut(s)	762
SfaNI	GCATC	2 cut(s)	380, 1043
SfcI	CTRYAG	1 cut(s)	281
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	1113
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	8 cut(s)	356, 572, 684, 733, 823, 923, 968, 1215
SsiI	CCGC	3 cut(s)	27, 662, 777
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	4 cut(s)	105, 410, 712, 913
StyI	CCWWGG	1 cut(s)	9
TaiI	ACGT	2 cut(s)	231, 619
TaqI	TCGA	3 cut(s)	587, 827, 1008
TaqII	GACCGA	1 cut(s)	845
TasI	AATT	8 cut(s)	356, 572, 684, 733, 823, 923, 968, 1215
TatI	WGTACW	1 cut(s)	975
TauI	GCSGC	1 cut(s)	780
TfiI	GAWTC	2 cut(s)	707, 1040
Tru1I	TTAA	3 cut(s)	456, 683, 1225
Tru9I	TTAA	3 cut(s)	456, 683, 1225
TscAI	CASTG	3 cut(s)	925, 1018, 1074
TseFI	GTSAC	5 cut(s)	67, 229, 241, 890, 1079
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	5 cut(s)	67, 229, 241, 890, 1079
TspDTI	ATGAA	6 cut(s)	134, 162, 348, 529, 816, 1208
TspGWI	ACGGA	3 cut(s)	67, 99, 149
TspRI	CASTG	3 cut(s)	925, 1018, 1074
Van91I	CCANNNNNTGG	1 cut(s)	914
VpaK11BI	GGWCC	1 cut(s)	1113
XapI	RAATTY	3 cut(s)	572, 968, 1215
XceI	RCATGY	2 cut(s)	355, 1194
XmnI	GAANNNNTTC	2 cut(s)	419, 909
XspI	CTAG	1 cut(s)	578
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.