Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006513

Physical Location & Seq

Genomic Coordinates Forward (+)

16287814 .. 16292398

Gene Structure 4585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGCTTCCAATCCCAAGGATCCGAAGCAAAGCGGAGGTTTCTTCGCCTCCATGGCTTCCACTTTGACCAATCTCGGTAGCTCCATGACCAAATCCGTCAACGGCATAATGGGTTATGAGGGGCTGGAGGTTATCAATCCAGACGGAAGCCATGAAGATCTTGAAGACGAAGCAAGGAAAGGAAGATGGAAGCAGGAGGATCGGGATAGTTACTGGAAGATAATGCAGAAATATATTGGCTCTGACGTCACCTCACTGGTGACCCTTCCAGTACTTATTTTTGAGCCGATGACTATGCTACAGAAAATGGCAGAGCTTATGGAATACTCCCATCTGTTAGATCTTGCAGATGAATGTGAGGATCCATACATGAGATCGGTATATGTTGCATCATTTTTCATATCTGTCTACTTTGCCTATCAACGAACCTGGAAGCCATTCAATCCAATACTTGGTGAGACTTATGAAATGGTTAATCATGGGGGCGTTACATTTTTATCAGAACAGGTCAGTCATCACCCTCCTATGAGTGCTGCTCATGCTGAGAATGAGCACTTTATTTATGACATAACTTCAAAGGTGAAAACCAAGTTTTTGGGGAACTCAGTTGATATCTATCCAGTCGGAAGGACGCATTTGACCCTCAAAAGAGATGGTGTAGAATTTGAATTGGCACCCCCTCCAACAAAAGTTAACAACTTAATTTTTGGACGAACATGGATCGATTCACCAGGAGATATGGTTCTGACCAATTTGACCACGGGGGACAAAGTTGTGCTGTATTTTCAACCATGCGGTTGGTTTGGATCTGGTCGCTATGAAGTAGATGGATATGTTTATAGTTCTGCCGAGGAACCTAAAATATTGATGACTGGAAAATGGAACGAGTCAATGAGTTATCAACCCTGCGACGCAGAAGGGGAACCACTTCCTGGCACTGAACTGAAAGAGGTTTGGAGAGTTGCTGATGTTCCACAGAATGACAGTTTCCAGTACACACATTTTGCACACAAAATAAACAGCTTTGAAAGTGCCCCTAAGAAGTTGTTGGCATCAGATTCTCGCTTGCGTCCTGATAGATACGCACTGGAGCAGGGTGACCTATCCAAAGCCGGTTTTGAGAAGAGCAGTCTGGAGGAGAGGCAGAGAGCTGAGAAGAAAAATCGACTGGAAAAAGGACAGGAGTTTACTCCAAGGTGGTTTGACAAAACAGATGAAGTCTTCAAGACAACATGGGATGACATGGACGTGTACCGTTACAATGGGAAGTACACCGAACACCGGGCTGCAATAGACAACTCAGACAGCGTCGAAGCGTTTGACATCAAATCAATAGAGTTCAACCCCTGGCAATACGAGGATTTGGCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

459

Amino Acids

52.34

Weight (kDa)

4.99

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09300 AT5G02100 AT5G02100 AT5G02100
fragaria_vesca	FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550 FvH4_6g13550
malus_domestica	MD04G1130200.v1.1 MD12G1143300.v1.1
prunus_persica	Prupe.6G256800_v2.0.a1 Prupe.6G256800_v2.0.a1
pyrus_communis	pycom04g11840 pycom12g13800
rosa_chinensis	RchiOBHm_Chr3g0466411
rosa_laevigata	RLG00000024576
rosa_multiflora	Rmu_sc0003332.1_g000028
rosa_roxburghii	Rroxscaffold_6G00414490
rosa_rugosa	Rorug03G0081800 Rorug03G0081900 Rorug03G0081900
rosa_samantha	Rh3AG128200 Rh3BG149500 Rh3DG150200
rosa_wichuraiana	Rw3G012110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	673
AccB7I	CCANNNNNTGG	2 cut(s)	452, 932
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	2 cut(s)	33, 795
AclWI	GGATC	7 cut(s)	14, 27, 207, 356, 369, 728, 814
AcsI	RAATTY	1 cut(s)	662
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	4 cut(s)	273, 995, 1253, 1271
AfiI	CCNNNNNNNGG	3 cut(s)	452, 932, 1281
AflIII	ACRYGT	1 cut(s)	1248
AgsI	TTSAA	8 cut(s)	164, 442, 576, 668, 788, 1028, 1225, 1342
AjiI	CACGTC	1 cut(s)	1249
AjnI	CCWGG	4 cut(s)	428, 730, 931, 1346
AloI	GAACNNNNNNTCC	2 cut(s)	726, 758
AluBI	AGCT	4 cut(s)	81, 316, 1023, 1151
AluI	AGCT	4 cut(s)	81, 316, 1023, 1151
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	7 cut(s)	14, 27, 207, 356, 369, 728, 814
ApeKI	GCWGC	4 cut(s)	533, 1286, 1367, 1370
ApoI	RAATTY	1 cut(s)	662
Asp700I	GAANNNNTTC	2 cut(s)	437, 927
AsuC2I	CCSGG	1 cut(s)	1283
AsuHPI	GGTGA	7 cut(s)	241, 271, 467, 509, 592, 720, 1109
BaeGI	GKGCMC	1 cut(s)	1036
BamHI	GGATCC	2 cut(s)	19, 361
BanI	GGYRCC	1 cut(s)	673
BbsI	GAAGAC	2 cut(s)	171, 1213
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	4 cut(s)	520, 1273, 1354, 1357
BccI	CCATC	4 cut(s)	180, 339, 647, 821
BceAI	ACGGC	1 cut(s)	118
BcgI	CGANNNNNNTGC	4 cut(s)	182, 216, 277, 311
BciT130I	CCWGG	4 cut(s)	430, 732, 933, 1348
BcnI	CCSGG	1 cut(s)	1283
BcoDI	GTCTC	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	53
BglII	AGATCT	2 cut(s)	157, 340
BisI	GCNGC	4 cut(s)	534, 1287, 1368, 1371
BlsI	GCNGC	4 cut(s)	535, 1288, 1369, 1372
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	5 cut(s)	430, 732, 933, 1283, 1348
BmgBI	CACGTC	1 cut(s)	1249
BmiI	GGNNCC	5 cut(s)	21, 363, 675, 855, 924
BmrFI	CCNGG	5 cut(s)	430, 732, 933, 1283, 1348
BmsI	GCATC	2 cut(s)	398, 1061
BpiI	GAAGAC	2 cut(s)	171, 1213
BplI	GAGNNNNNCTC	2 cut(s)	520, 552
BpmI	CTGGAG	3 cut(s)	146, 1109, 1154
BpuMI	CCSGG	1 cut(s)	1283
Bsa29I	ATCGAT	1 cut(s)	723
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	6 cut(s)	15, 51, 759, 849, 1193, 1346
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	452, 932, 1281
Bse118I	RCCGGY	1 cut(s)	1112
Bse1I	ACTGG	8 cut(s)	218, 261, 269, 620, 877, 991, 1092, 1173
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	4 cut(s)	430, 732, 933, 1348
BseCI	ATCGAT	1 cut(s)	723
BseDI	CCNNGG	6 cut(s)	15, 51, 759, 849, 1193, 1346
BseGI	GGATG	1 cut(s)	1243
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	3 cut(s)	452, 932, 1281
BseMII	CTCAG	4 cut(s)	534, 618, 1143, 1314
BseNI	ACTGG	8 cut(s)	218, 261, 269, 620, 877, 991, 1092, 1173
BseRI	GAGGAG	1 cut(s)	1151
BseSI	GKGCMC	1 cut(s)	1036
BseXI	GCAGC	4 cut(s)	520, 1273, 1354, 1357
BshNI	GGYRCC	1 cut(s)	673
BshVI	ATCGAT	1 cut(s)	723
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	1113, 1282
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	3 cut(s)	452, 932, 1281
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	779
Bsp1286I	GDGCHC	2 cut(s)	555, 1036
Bsp143I	GATC	8 cut(s)	19, 157, 199, 340, 361, 374, 720, 806
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	2 cut(s)	33, 795
BspCNI	CTCAG	4 cut(s)	535, 617, 1144, 1313
BspDI	ATCGAT	1 cut(s)	723
BspLI	GGNNCC	5 cut(s)	21, 363, 675, 855, 924
BspPI	GGATC	7 cut(s)	14, 27, 207, 356, 369, 728, 814
BspQI	GCTCTTC	1 cut(s)	1118
BspT107I	GGYRCC	1 cut(s)	673
BsrFI	RCCGGY	1 cut(s)	1112
BsrI	ACTGG	8 cut(s)	218, 261, 269, 620, 877, 991, 1092, 1173
BssAI	RCCGGY	1 cut(s)	1112
BssECI	CCNNGG	6 cut(s)	15, 51, 759, 849, 1193, 1346
BssMI	GATC	8 cut(s)	19, 157, 199, 340, 361, 374, 720, 806
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	3 cut(s)	15, 51, 1193
Bst2UI	CCWGG	4 cut(s)	430, 732, 933, 1348
Bst4CI	ACNGT	2 cut(s)	986, 1256
Bst6I	CTCTTC	1 cut(s)	1118
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	1067
BstDEI	CTNAG	5 cut(s)	543, 604, 1038, 1152, 1300
BstDSI	CCRYGG	2 cut(s)	51, 759
BstEII	GGTNACC	2 cut(s)	259, 1097
BstF5I	GGATG	1 cut(s)	1243
BstKTI	GATC	8 cut(s)	22, 160, 202, 343, 364, 377, 723, 809
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	8 cut(s)	19, 157, 199, 340, 361, 374, 720, 806
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 539
BstNI	CCWGG	4 cut(s)	430, 732, 933, 1348
BstPI	GGTNACC	2 cut(s)	259, 1097
BstSCI	CCNGG	5 cut(s)	428, 730, 931, 1281, 1346
BstSFI	CTRYAG	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	1036
BstV1I	GCAGC	4 cut(s)	520, 1273, 1354, 1357
BstV2I	GAAGAC	2 cut(s)	171, 1213
BstX2I	RGATCY	5 cut(s)	19, 157, 340, 361, 806
BstXI	CCANNNNNNTGG	2 cut(s)	595, 798
BstYI	RGATCY	5 cut(s)	19, 157, 340, 361, 806
Bsu15I	ATCGAT	1 cut(s)	723
BsuTUI	ATCGAT	1 cut(s)	723
BtgI	CCRYGG	2 cut(s)	51, 759
BtrI	CACGTC	1 cut(s)	1249
BtsCI	GGATG	1 cut(s)	1243
BtsIMutI	CAGTG	3 cut(s)	254, 936, 1085
Cac8I	GCNNGC	1 cut(s)	1067
Cfr10I	RCCGGY	1 cut(s)	1112
ClaI	ATCGAT	1 cut(s)	723
CseI	GACGC	4 cut(s)	640, 920, 1058, 1297
Csp6I	GTAC	4 cut(s)	272, 994, 1252, 1270
CviQI	GTAC	4 cut(s)	272, 994, 1252, 1270
DdeI	CTNAG	5 cut(s)	543, 604, 1038, 1152, 1300
DpnI	GATC	8 cut(s)	21, 159, 201, 342, 363, 376, 722, 808
DpnII	GATC	8 cut(s)	19, 157, 199, 340, 361, 374, 720, 806
Eam1104I	CTCTTC	1 cut(s)	1118
EarI	CTCTTC	1 cut(s)	1118
Eco130I	CCWWGG	3 cut(s)	15, 51, 1193
Eco32I	GATATC	1 cut(s)	613
Eco91I	GGTNACC	2 cut(s)	259, 1097
EcoO65I	GGTNACC	2 cut(s)	259, 1097
EcoRII	CCWGG	4 cut(s)	428, 730, 931, 1346
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	3 cut(s)	15, 51, 1193
ErhI	CCWWGG	3 cut(s)	15, 51, 1193
FaqI	GGGAC	1 cut(s)	779
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	4 cut(s)	534, 1287, 1368, 1371
FokI	GGATG	1 cut(s)	1250
Fsp4HI	GCNGC	4 cut(s)	534, 1287, 1368, 1371
GluI	GCNGC	4 cut(s)	534, 1287, 1368, 1371
GsuI	CTGGAG	3 cut(s)	146, 1109, 1154
HapII	CCGG	2 cut(s)	1113, 1282
HgaI	GACGC	4 cut(s)	640, 920, 1058, 1297
Hin1I	GRCGYC	1 cut(s)	246
HincII	GTYRAC	2 cut(s)	100, 694
HindII	GTYRAC	2 cut(s)	100, 694
HinfI	GANTC	3 cut(s)	725, 887, 1058
HpaI	GTTAAC	1 cut(s)	694
HpaII	CCGG	2 cut(s)	1113, 1282
HphI	GGTGA	7 cut(s)	241, 271, 467, 509, 592, 720, 1109
Hpy166II	GTNNAC	7 cut(s)	100, 409, 694, 996, 1188, 1252, 1272
Hpy188I	TCNGA	7 cut(s)	24, 244, 502, 626, 747, 1057, 1303
Hpy188III	TCNNGA	6 cut(s)	140, 161, 203, 1073, 1133, 1225
Hpy8I	GTNNAC	7 cut(s)	100, 409, 694, 996, 1188, 1252, 1272
Hpy99I	CGWCG	2 cut(s)	914, 1313
HpyAV	CCTTC	3 cut(s)	275, 621, 911
HpyCH4III	ACNGT	2 cut(s)	986, 1256
HpyCH4IV	ACGT	2 cut(s)	246, 1248
HpyCH4V	TGCA	5 cut(s)	226, 347, 389, 1007, 1289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 539
HpyF3I	CTNAG	5 cut(s)	543, 604, 1038, 1152, 1300
HpySE526I	ACGT	2 cut(s)	246, 1248
Hsp92I	GRCGYC	1 cut(s)	246
KspAI	GTTAAC	1 cut(s)	694
Kzo9I	GATC	8 cut(s)	19, 157, 199, 340, 361, 374, 720, 806
LguI	GCTCTTC	1 cut(s)	1118
LmnI	GCTCC	2 cut(s)	86, 1090
Lsp1109I	GCAGC	4 cut(s)	520, 1273, 1354, 1357
LweI	GCATC	2 cut(s)	398, 1061
MaeII	ACGT	2 cut(s)	246, 1248
MaeIII	GTNAC	6 cut(s)	209, 247, 259, 487, 1097, 1256
MalI	GATC	8 cut(s)	21, 159, 201, 342, 363, 376, 722, 808
MboI	GATC	8 cut(s)	19, 157, 199, 340, 361, 374, 720, 806
MboII	GAAGA	8 cut(s)	34, 167, 176, 195, 229, 1135, 1168, 1213
MflI	RGATCY	5 cut(s)	19, 157, 340, 361, 806
MhlI	GDGCHC	2 cut(s)	555, 1036
MluCI	AATT	4 cut(s)	662, 668, 702, 751
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	2 cut(s)	604, 707
MroXI	GAANNNNTTC	2 cut(s)	437, 927
MseI	TTAA	4 cut(s)	474, 693, 701, 1375
MslI	CAYNNNNRTG	1 cut(s)	1247
MspI	CCGG	2 cut(s)	1113, 1282
MspR9I	CCNGG	5 cut(s)	430, 732, 933, 1283, 1348
MvaI	CCWGG	4 cut(s)	430, 732, 933, 1348
MwoI	GCNNNNNNNGC	2 cut(s)	53, 539
NciI	CCSGG	1 cut(s)	1283
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	8 cut(s)	19, 157, 199, 340, 361, 374, 720, 806
NlaIV	GGNNCC	5 cut(s)	21, 363, 675, 855, 924
NmeAIII	GCCGAG	1 cut(s)	874
NmuCI	GTSAC	3 cut(s)	247, 259, 1097
PciSI	GCTCTTC	1 cut(s)	1118
PdmI	GAANNNNTTC	2 cut(s)	437, 927
PfeI	GAWTC	2 cut(s)	725, 1058
PflFI	GACNNNGTC	1 cut(s)	1307
PflMI	CCANNNNNTGG	2 cut(s)	452, 932
PkrI	GCNGC	4 cut(s)	535, 1288, 1369, 1372
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
Psp6I	CCWGG	4 cut(s)	428, 730, 931, 1346
PspEI	GGTNACC	2 cut(s)	259, 1097
PspGI	CCWGG	4 cut(s)	428, 730, 931, 1346
PspN4I	GGNNCC	5 cut(s)	21, 363, 675, 855, 924
PsuI	RGATCY	5 cut(s)	19, 157, 340, 361, 806
PsyI	GACNNNGTC	1 cut(s)	1307
RsaI	GTAC	4 cut(s)	273, 995, 1253, 1271
RsaNI	GTAC	4 cut(s)	272, 994, 1252, 1270
RseI	CAYNNNNRTG	1 cut(s)	1247
SapI	GCTCTTC	1 cut(s)	1118
SaqAI	TTAA	4 cut(s)	474, 693, 701, 1375
SatI	GCNGC	4 cut(s)	534, 1287, 1368, 1371
Sau3AI	GATC	8 cut(s)	19, 157, 199, 340, 361, 374, 720, 806
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	5 cut(s)	430, 732, 933, 1283, 1348
SduI	GDGCHC	2 cut(s)	555, 1036
SfaNI	GCATC	2 cut(s)	398, 1061
SfcI	CTRYAG	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	1247
Sse9I	AATT	4 cut(s)	662, 668, 702, 751
SsiI	CCGC	2 cut(s)	33, 795
SspI	AATATT	1 cut(s)	864
StyD4I	CCNGG	5 cut(s)	428, 730, 931, 1281, 1346
StyI	CCWWGG	3 cut(s)	15, 51, 1193
TaaI	ACNGT	2 cut(s)	986, 1256
TaiI	ACGT	2 cut(s)	249, 1251
TaqI	TCGA	3 cut(s)	723, 1165, 1311
TasI	AATT	4 cut(s)	662, 668, 702, 751
TatI	WGTACW	3 cut(s)	271, 993, 1269
TfiI	GAWTC	2 cut(s)	725, 1058
Tru1I	TTAA	4 cut(s)	474, 693, 701, 1375
Tru9I	TTAA	4 cut(s)	474, 693, 701, 1375
TscAI	CASTG	3 cut(s)	261, 943, 1092
TseFI	GTSAC	3 cut(s)	247, 259, 1097
TseI	GCWGC	4 cut(s)	533, 1286, 1367, 1370
Tsp45I	GTSAC	3 cut(s)	247, 259, 1097
TspDTI	ATGAA	6 cut(s)	168, 366, 388, 480, 834, 1230
TspGWI	ACGGA	2 cut(s)	85, 159
TspRI	CASTG	3 cut(s)	261, 943, 1092
Tth111I	GACNNNGTC	1 cut(s)	1307
Van91I	CCANNNNNTGG	2 cut(s)	452, 932
XapI	RAATTY	1 cut(s)	662
XmiI	GTMKAC	1 cut(s)	408
XmnI	GAANNNNTTC	2 cut(s)	437, 927
ZraI	GACGTC	1 cut(s)	247
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.